Strain Fitness in Sphingobium sp. HT1-2 around GFF2102

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,138,306	+		GFF2101	0.86	+0.6
2,138,306	+		GFF2101	0.86	+0.1
2,138,306	+		GFF2101	0.86	+0.7
2,138,306	+		GFF2101	0.86	+0.9
2,138,306	+		GFF2101	0.86	+0.9
2,138,306	+		GFF2101	0.86	+0.4
2,138,307	+		GFF2101	0.86	-0.8
2,138,307	+		GFF2101	0.86	+0.8
2,138,307	+		GFF2101	0.86	+0.2
2,138,307	-		GFF2101	0.86	-1.2
2,138,311	+		GFF2101	0.86	+0.0
2,138,314	-		GFF2101	0.87	-0.5
2,138,314	-		GFF2101	0.87	+0.2
2,138,314	-		GFF2101	0.87	-0.7
2,138,327	+		GFF2101	0.88	+1.4
2,138,332	+		GFF2101	0.88	+0.4
2,138,340	-		GFF2101	0.89	+1.0
2,138,340	-		GFF2101	0.89	-2.2
2,138,340	-		GFF2101	0.89	+1.1
2,138,340	-		GFF2101	0.89	-0.2
2,138,354	+				-0.9
2,138,360	+				-1.2
2,138,415	-				-0.5
2,138,430	+				-0.1
2,138,437	-				+0.1
2,138,437	-				-0.1
2,138,437	-				-1.7
2,138,465	+				+1.4
2,138,465	+				+1.1
2,138,465	+				-0.3
2,138,465	+				-1.1
2,138,473	-				-1.2
2,138,473	-				+0.2
2,138,473	-				+1.7
2,138,473	-				-0.3
2,138,477	+				-1.7
2,138,495	-				-0.6
2,138,566	-				+0.0
2,138,608	+				-1.9
2,138,619	+				-2.3
2,138,619	+				+0.9
2,138,619	+				-1.5
2,138,619	+				-0.1
2,138,622	-				-0.3
2,138,622	-				+0.6
2,138,627	-				+1.1
2,138,627	-				-0.1
2,138,627	-				-0.6
2,138,627	-				+0.8
2,138,627	-				-0.2
2,138,629	-				+0.2
2,138,636	+				-1.8
2,138,636	+				-0.3
2,138,639	+				+1.0
2,138,644	-				-0.9
2,138,676	-				-1.1
2,138,678	-				-0.8
2,138,686	+				+0.3
2,138,686	+				-0.5
2,138,686	+				-0.1
2,138,686	+				-0.3
2,138,686	+				-0.8
2,138,686	+				-0.9
2,138,686	+				-0.8
2,138,686	+				-1.9
2,138,686	+				+0.8
2,138,686	+				-1.2
2,138,686	+				-1.3
2,138,686	+				+0.2
2,138,686	+				+1.2
2,138,686	+				-0.6
2,138,686	+				-0.3
2,138,686	+				-0.2
2,138,686	+				-0.6
2,138,686	+				-0.2
2,138,686	+				+0.1
2,138,686	+				+0.8
2,138,686	+				-0.2
2,138,686	+				-0.8
2,138,686	+				-0.8
2,138,686	+				+0.1
2,138,686	+				-0.6
2,138,686	+				+1.0
2,138,686	+				-0.1
2,138,686	+				-1.5
2,138,686	+				-0.6
2,138,686	+				+0.7
2,138,686	+				+0.8
2,138,686	+				-0.3
2,138,686	+				-0.1
2,138,686	+				-1.6
2,138,686	+				-3.2
2,138,686	+				-0.1
2,138,686	+				+0.1
2,138,686	+				+0.2
2,138,686	+				-1.2
2,138,686	+				+0.2
2,138,686	+				-0.5
2,138,686	+				-0.1
2,138,686	+				-0.1
2,138,686	+				-0.3
2,138,686	+				-1.3
2,138,686	+				+1.0
2,138,686	+				+0.4
2,138,686	+				+1.1
2,138,686	+				-0.6
2,138,686	+				-0.1
2,138,686	+				+1.1
2,138,686	+				-1.7
2,138,686	+				-0.4
2,138,686	+				+1.0
2,138,686	+				-1.5
2,138,686	+				+0.0
2,138,686	+				-0.7
2,138,686	+				+0.3
2,138,686	+				+1.1
2,138,686	+				-1.6
2,138,686	+				-0.7
2,138,686	+				-0.6
2,138,686	+				+0.3
2,138,686	+				-0.4
2,138,686	+				-0.7
2,138,686	+				+0.6
2,138,686	+				+0.2
2,138,686	+				-1.9
2,138,686	+				+0.5
2,138,686	+				-0.5
2,138,686	+				-1.1
2,138,686	+				+1.0
2,138,686	+				-0.4
2,138,686	+				-1.9
2,138,686	+				-1.9
2,138,686	+				+0.5
2,138,686	+				-1.7
2,138,686	+				-0.1
2,138,686	+				+0.8
2,138,686	+				-1.9
2,138,686	+				-0.2
2,138,686	+				+0.2
2,138,686	+				-1.3
2,138,686	+				+1.3
2,138,686	+				+0.3
2,138,686	+				+0.2
2,138,686	+				-1.3
2,138,686	+				+0.4
2,138,686	+				+1.3
2,138,686	+				-0.0
2,138,686	+				-0.8
2,138,686	+				+0.2
2,138,686	+				-1.7
2,138,686	+				+1.5
2,138,686	+				+0.9
2,138,686	+				-0.6
2,138,686	-				+0.8
2,138,686	-				-0.9
2,138,689	-				+1.0
2,138,694	-				-0.2
2,138,694	-				+0.8
2,138,694	-				-1.8
2,138,694	-				-1.7
2,138,694	-				-0.8
2,138,694	-				-0.2
2,138,694	-				+0.4
2,138,694	-				-0.3
2,138,694	-				-0.8
2,138,694	-				-0.8
2,138,694	-				-0.9
2,138,694	-				+0.5
2,138,694	-				+0.0
2,138,694	-				-2.3
2,138,694	-				-0.4
2,138,694	-				+0.6
2,138,694	-				-1.5
2,138,694	-				-1.4
2,138,694	-				-0.2
2,138,694	-				+0.8
2,138,694	-				+0.5
2,138,694	-				-2.3
2,138,694	-				-0.3
2,138,694	-				-1.2
2,138,694	-				-1.0
2,138,694	-				+0.2
2,138,694	-				-1.1
2,138,694	-				+1.2
2,138,694	-				+0.2
2,138,694	-				-1.5
2,138,694	-				+1.2
2,138,694	-				+0.9
2,138,694	-				-0.4
2,138,694	-				+0.2
2,138,694	-				-1.9
2,138,694	-				+0.5
2,138,694	-				-1.6
2,138,694	-				-0.5
2,138,694	-				-0.4
2,138,694	-				-0.9
2,138,694	-				-1.5
2,138,694	-				-0.3
2,138,694	-				+0.4
2,138,694	-				+1.1
2,138,694	-				-0.7
2,138,694	-				-0.2
2,138,694	-				+0.9
2,138,694	-				+0.4
2,138,694	-				-1.5
2,138,694	-				-1.5
2,138,694	-				-2.8
2,138,694	-				+1.4
2,138,694	-				-1.0
2,138,694	-				+0.4
2,138,694	-				+0.9
2,138,694	-				-0.5
2,138,694	-				-0.2
2,138,694	-				-1.1
2,138,694	-				+0.9
2,138,694	-				-0.2
2,138,694	-				-1.3
2,138,694	-				+0.6
2,138,694	-				-0.2
2,138,694	-				+0.4
2,138,694	-				+0.1
2,138,694	-				+0.6
2,138,694	-				-0.2
2,138,694	-				-0.2
2,138,694	-				-1.3
2,138,694	-				+0.1
2,138,694	-				+0.0
2,138,694	-				-0.6
2,138,694	-				-0.2
2,138,694	-				-0.6
2,138,694	-				-0.6
2,138,694	-				+0.5
2,138,694	-				-2.1
2,138,694	-				+0.6
2,138,694	-				+1.2
2,138,694	-				+0.0
2,138,694	-				-0.1
2,138,694	-				-1.1
2,138,694	-				-0.6
2,138,694	-				+0.7
2,138,694	-				+0.8
2,138,694	-				-1.0
2,138,694	-				+0.2
2,138,694	-				-1.6
2,138,694	-				-1.8
2,138,694	-				-0.1
2,138,694	-				+0.1
2,138,694	-				+0.1
2,138,694	-				-0.3
2,138,696	-				-0.8
2,138,716	+				-0.9
2,138,718	-				+1.1
2,138,771	-				+1.5
2,138,772	+				-0.5
2,138,772	+				-0.6
2,138,783	+				+0.2
2,138,791	-				+0.4
2,138,800	-				+1.1
2,138,803	+				-1.2
2,138,825	-				+0.3
2,138,870	+				-0.4
2,138,870	+				+1.7
2,138,870	+				+0.2
2,138,878	-				-0.3
2,138,878	-				+0.4
2,138,879	-				+1.7
2,138,886	-				+0.1
2,138,911	+				-0.3
2,138,930	+				-0.1
2,138,933	-				-0.2
2,138,936	+				+0.0
2,138,946	+				+0.0
2,138,971	-				+0.2
2,138,988	+				+0.5
2,138,988	+				-0.6
2,138,988	+				-0.1
2,138,993	+				-0.6
2,138,993	+				-2.0
2,138,996	-				-1.7
2,138,996	-				-2.2
2,139,001	-				+1.0
2,139,002	-				-0.9
2,139,009	+				-0.8
2,139,009	+				+1.2
2,139,009	+				-1.2
2,139,009	-				+0.4
2,139,017	-				+0.6
2,139,017	-				-0.5
2,139,017	-				-0.3
2,139,017	-				+0.6
2,139,022	-				-0.6
2,139,132	-				-0.0
2,139,138	-				-1.8
2,139,144	-				-0.3
2,139,144	-				+1.7
2,139,233	+				+0.2
2,139,240	+				-0.6
2,139,263	+				-1.5
2,139,265	+				-0.2
2,139,265	+				+0.5
2,139,265	+				+0.4
2,139,265	+				-1.5
2,139,273	-				-0.0
2,139,273	-				+0.1
2,139,273	-				-0.9
2,139,312	+		GFF2102	0.15	-0.0
2,139,312	+		GFF2102	0.15	+1.1
2,139,313	-		GFF2102	0.15	-0.0
2,139,320	-		GFF2102	0.18	+0.6
2,139,320	-		GFF2102	0.18	-0.3
2,139,320	-		GFF2102	0.18	-0.8
2,139,325	-		GFF2102	0.20	-0.1
2,139,337	+		GFF2102	0.24	-0.1
2,139,341	-		GFF2102	0.26	+0.8
2,139,347	+		GFF2102	0.28	+0.1
2,139,355	-		GFF2102	0.31	+0.5
2,139,357	+		GFF2102	0.31	+0.1
2,139,360	-		GFF2102	0.33	+0.1
2,139,365	-		GFF2102	0.34	-0.3
2,139,370	-		GFF2102	0.36	+0.1
2,139,377	+		GFF2102	0.39	-1.3
2,139,379	+		GFF2102	0.40	+0.9
2,139,386	-		GFF2102	0.42	+0.2
2,139,393	+		GFF2102	0.45	-0.9
2,139,445	-		GFF2102	0.64	-0.2
2,139,466	+		GFF2102	0.72	-1.8
2,139,473	+		GFF2102	0.74	-0.7
2,139,474	-		GFF2102	0.75	-0.6
2,139,474	-		GFF2102	0.75	+0.3
2,139,486	-		GFF2102	0.79	+0.1
2,139,498	+		GFF2102	0.84	-1.1
2,139,499	-		GFF2102	0.84	-0.1
2,139,506	-		GFF2102	0.87	+0.4
2,139,506	-		GFF2102	0.87	+0.0
2,139,506	-		GFF2102	0.87	-1.0
2,139,506	-		GFF2102	0.87	+0.3
2,139,506	-		GFF2102	0.87	+0.9
2,139,511	-		GFF2102	0.89	-0.4
2,139,516	-				+0.0
2,139,539	+				-1.8
2,139,560	-				-0.2
2,139,569	+				+0.3
2,139,569	+				+0.5
2,139,569	+				+0.2
2,139,569	+				+0.2
2,139,569	+				-0.0
2,139,569	+				-0.3
2,139,569	+				+0.8
2,139,569	+				-0.1
2,139,569	+				-0.9
2,139,569	+				+0.4
2,139,569	+				-0.5
2,139,569	+				+0.4
2,139,569	+				-1.5
2,139,569	+				-1.5
2,139,569	+				-0.2
2,139,569	+				+0.7
2,139,569	+				+0.1
2,139,569	+				+0.4
2,139,569	+				+0.9
2,139,574	+				-1.3
2,139,574	+				-1.5
2,139,576	+				-0.9
2,139,577	-				-1.4
2,139,577	-				+0.0
2,139,577	-				-0.9
2,139,577	-				-1.2
2,139,577	-				-0.0
2,139,577	-				+0.9
2,139,577	-				-0.1
2,139,577	-				+0.7
2,139,577	-				+0.7
2,139,577	-				+2.2
2,139,577	-				-0.7
2,139,577	-				-1.7
2,139,577	-				+0.7
2,139,577	-				+0.7
2,139,577	-				+1.2
2,139,577	-				+1.0
2,139,577	-				+0.7
2,139,577	-				-1.8
2,139,577	-				+0.1
2,139,578	+				-1.6
2,139,582	-				+0.4
2,139,584	-				-2.0
2,139,641	-				-1.0
2,139,650	+				-1.3
2,139,655	+				-0.7
2,139,663	-				-0.0
2,139,694	-				+0.7
2,139,711	+				-0.6
2,139,711	+				-0.6
2,139,711	+				-0.3
2,139,719	-				-0.2
2,139,736	-				-0.5
2,139,736	-				-0.5
2,139,741	-				+0.7
2,139,745	+				+0.1
2,139,750	+				-2.1
2,139,758	-				-0.9