Strain Fitness in Sphingobium sp. HT1-2 around GFF2070

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,105,671	+				-0.2
2,105,671	+				-0.2
2,105,679	-				+0.3
2,105,681	+				+0.4
2,105,681	+				-1.1
2,105,681	+				-2.2
2,105,699	-				-0.7
2,105,720	-				-1.2
2,105,736	+				-1.7
2,105,740	+		GFF2068	0.11	-1.2
2,105,746	+		GFF2068	0.13	+0.3
2,105,748	-		GFF2068	0.13	+0.4
2,105,757	-		GFF2068	0.16	+0.1
2,105,778	-		GFF2068	0.21	-0.6
2,105,778	-		GFF2068	0.21	+0.6
2,105,827	-		GFF2068	0.34	+0.4
2,105,827	-		GFF2068	0.34	-0.7
2,105,853	-		GFF2068	0.41	-0.7
2,105,855	+		GFF2068	0.42	+0.0
2,105,864	-		GFF2068	0.44	+0.3
2,105,864	-		GFF2068	0.44	-1.7
2,105,886	+		GFF2068	0.50	-1.0
2,105,906	-		GFF2068	0.56	-0.2
2,105,912	-		GFF2068	0.57	-0.4
2,105,930	-		GFF2068	0.62	-0.3
2,105,941	-		GFF2068	0.65	-1.4
2,105,958	+		GFF2068	0.70	-1.7
2,106,029	+		GFF2068	0.89	-0.7
2,106,029	+		GFF2068	0.89	+1.3
2,106,029	+		GFF2068	0.89	+0.1
2,106,036	-				-1.4
2,106,050	+				-1.8
2,106,051	+				-0.9
2,106,051	+				-1.6
2,106,051	+				+0.4
2,106,051	+				-1.6
2,106,059	-				-1.3
2,106,063	-				-0.2
2,106,064	-				-1.3
2,106,086	-				-1.3
2,106,090	+				-0.6
2,106,090	+				+0.3
2,106,090	+				+0.6
2,106,096	+				+0.2
2,106,096	+				+0.2
2,106,096	+				-1.8
2,106,096	-				-1.6
2,106,098	-				-0.9
2,106,098	-				-1.4
2,106,098	-				-1.8
2,106,104	-				+1.6
2,106,104	-				-0.1
2,106,105	-				+0.7
2,106,116	+				+0.1
2,106,124	+				+1.1
2,106,124	-				+0.4
2,106,124	-				-0.5
2,106,124	-				-0.2
2,106,124	-				-1.2
2,106,132	-				-1.9
2,106,156	-				-0.6
2,106,174	+		GFF2069	0.13	+0.4
2,106,187	+		GFF2069	0.16	-0.1
2,106,195	+		GFF2069	0.18	+0.8
2,106,195	-		GFF2069	0.18	-0.2
2,106,195	-		GFF2069	0.18	+0.9
2,106,195	-		GFF2069	0.18	-0.3
2,106,195	-		GFF2069	0.18	-1.3
2,106,203	-		GFF2069	0.20	-0.7
2,106,231	-		GFF2069	0.27	-1.0
2,106,248	+		GFF2069	0.31	+0.3
2,106,266	+		GFF2069	0.35	+0.1
2,106,266	+		GFF2069	0.35	-1.1
2,106,298	-		GFF2069	0.43	-0.3
2,106,298	-		GFF2069	0.43	+1.2
2,106,306	-		GFF2069	0.45	-0.5
2,106,323	-		GFF2069	0.49	-0.6
2,106,349	-		GFF2069	0.56	+0.0
2,106,349	-		GFF2069	0.56	-0.3
2,106,349	-		GFF2069	0.56	+0.1
2,106,372	-		GFF2069	0.61	-0.0
2,106,420	+		GFF2069	0.73	+0.8
2,106,431	+		GFF2069	0.76	-1.3
2,106,431	+		GFF2069	0.76	-0.3
2,106,431	+		GFF2069	0.76	-0.1
2,106,431	+		GFF2069	0.76	-0.2
2,106,431	+		GFF2069	0.76	+0.3
2,106,439	-		GFF2069	0.78	+0.6
2,106,439	-		GFF2069	0.78	+0.3
2,106,439	-		GFF2069	0.78	-0.6
2,106,439	-		GFF2069	0.78	-1.8
2,106,439	-		GFF2069	0.78	-0.0
2,106,439	-		GFF2069	0.78	-1.4
2,106,439	-		GFF2069	0.78	-1.1
2,106,439	-		GFF2069	0.78	-0.3
2,106,439	-		GFF2069	0.78	+0.0
2,106,456	-		GFF2069	0.82	+2.0
2,106,464	+		GFF2069	0.84	-0.6
2,106,472	-		GFF2069	0.86	-0.7
2,106,484	-		GFF2069	0.89	-0.7
2,106,489	-				-0.4
2,106,511	+				-2.1
2,106,515	-				-0.0
2,106,519	-				-0.6
2,106,529	-				-0.1
2,106,540	+				-1.1
2,106,540	+				+0.4
2,106,548	+				+0.4
2,106,548	-				+0.0
2,106,548	-				+0.1
2,106,548	-				-0.8
2,106,563	+				-1.2
2,106,563	+				-0.3
2,106,563	+				+0.2
2,106,571	-				-2.1
2,106,571	-				+0.3
2,106,571	-				-0.1
2,106,571	-				-0.1
2,106,571	-				+1.5
2,106,571	-				+1.4
2,106,571	-				-0.1
2,106,581	-				-1.7
2,106,596	-				+0.6
2,106,662	+				+1.0
2,106,662	+				-0.7
2,106,670	-				+1.0
2,106,671	+				-0.4
2,106,696	+				-0.4
2,106,704	-				+0.3
2,106,717	-				-0.1
2,106,729	+				-1.6
2,106,737	-				-1.4
2,106,737	-				-1.4
2,106,737	-				-0.3
2,106,759	+				-0.2
2,106,759	+				-0.4
2,106,759	+				-0.9
2,106,767	-				+1.0
2,106,770	-				+0.7
2,106,772	-				-1.3
2,106,785	-				-1.1
2,106,795	-		GFF2070	0.11	+0.0
2,106,803	+		GFF2070	0.11	-0.8
2,106,803	+		GFF2070	0.11	+0.8
2,106,803	+		GFF2070	0.11	+0.5
2,106,808	+		GFF2070	0.12	+1.2
2,106,816	-		GFF2070	0.12	-0.9
2,106,830	-		GFF2070	0.13	+1.8
2,106,904	-		GFF2070	0.19	-0.1
2,106,919	-		GFF2070	0.20	-0.7
2,106,922	+		GFF2070	0.20	-1.2
2,106,924	-		GFF2070	0.20	+0.3
2,106,928	+		GFF2070	0.20	+0.2
2,106,931	-		GFF2070	0.21	-1.6
2,106,933	+		GFF2070	0.21	-0.2
2,106,933	+		GFF2070	0.21	+1.1
2,106,933	+		GFF2070	0.21	-1.5
2,106,933	+		GFF2070	0.21	+1.0
2,106,933	+		GFF2070	0.21	+0.0
2,106,933	+		GFF2070	0.21	-0.3
2,106,941	-		GFF2070	0.21	-0.4
2,106,971	+		GFF2070	0.24	-1.7
2,106,988	+		GFF2070	0.25	+0.3
2,107,045	+		GFF2070	0.29	+0.1
2,107,045	+		GFF2070	0.29	+0.1
2,107,045	+		GFF2070	0.29	+1.3
2,107,045	+		GFF2070	0.29	+0.7
2,107,053	-		GFF2070	0.30	-0.5
2,107,054	-		GFF2070	0.30	+0.0
2,107,054	-		GFF2070	0.30	-0.3
2,107,080	+		GFF2070	0.32	+0.1
2,107,080	+		GFF2070	0.32	-0.2
2,107,093	-		GFF2070	0.33	-0.1
2,107,096	-		GFF2070	0.33	-1.7
2,107,106	-		GFF2070	0.34	-0.5
2,107,116	+		GFF2070	0.34	-1.7
2,107,116	+		GFF2070	0.34	-1.3
2,107,124	-		GFF2070	0.35	+0.5
2,107,124	-		GFF2070	0.35	+0.4
2,107,208	+		GFF2070	0.41	-0.3
2,107,235	+		GFF2070	0.43	-1.3
2,107,235	+		GFF2070	0.43	-0.6
2,107,235	+		GFF2070	0.43	+0.7
2,107,240	+		GFF2070	0.44	+0.3
2,107,240	+		GFF2070	0.44	-1.3
2,107,240	+		GFF2070	0.44	-1.2
2,107,241	+		GFF2070	0.44	-0.7
2,107,243	-		GFF2070	0.44	+1.2
2,107,243	-		GFF2070	0.44	-0.9
2,107,243	-		GFF2070	0.44	+1.1
2,107,248	-		GFF2070	0.44	+0.3
2,107,249	-		GFF2070	0.44	-0.6
2,107,269	-		GFF2070	0.46	+0.6
2,107,273	+		GFF2070	0.46	-0.8
2,107,273	+		GFF2070	0.46	-0.1
2,107,274	+		GFF2070	0.46	-0.9
2,107,281	-		GFF2070	0.47	-2.5
2,107,281	-		GFF2070	0.47	-1.8
2,107,281	-		GFF2070	0.47	-1.3
2,107,281	-		GFF2070	0.47	+0.1
2,107,281	-		GFF2070	0.47	+1.0
2,107,281	-		GFF2070	0.47	+0.3
2,107,300	-		GFF2070	0.48	-1.7
2,107,305	-		GFF2070	0.48	-1.0
2,107,333	+		GFF2070	0.50	-1.3
2,107,341	-		GFF2070	0.51	-1.5
2,107,372	+		GFF2070	0.53	+1.6
2,107,373	-		GFF2070	0.53	-0.5
2,107,389	+		GFF2070	0.55	+0.7
2,107,389	+		GFF2070	0.55	+0.4
2,107,389	+		GFF2070	0.55	-0.2
2,107,389	+		GFF2070	0.55	-1.2
2,107,389	+		GFF2070	0.55	-0.0
2,107,389	+		GFF2070	0.55	+1.1
2,107,397	-		GFF2070	0.55	-1.7
2,107,397	-		GFF2070	0.55	-0.6
2,107,397	-		GFF2070	0.55	-0.0
2,107,427	+		GFF2070	0.57	-0.3
2,107,427	+		GFF2070	0.57	-0.7
2,107,427	+		GFF2070	0.57	+1.4
2,107,427	+		GFF2070	0.57	+0.8
2,107,428	+		GFF2070	0.58	+1.9
2,107,432	+		GFF2070	0.58	+0.6
2,107,435	-		GFF2070	0.58	+0.3
2,107,461	+		GFF2070	0.60	-0.9
2,107,464	-		GFF2070	0.60	-2.3
2,107,486	-		GFF2070	0.62	-1.5
2,107,491	-		GFF2070	0.62	-0.3
2,107,502	+		GFF2070	0.63	-1.7
2,107,502	+		GFF2070	0.63	+0.4
2,107,502	+		GFF2070	0.63	-2.0
2,107,502	+		GFF2070	0.63	-0.7
2,107,502	+		GFF2070	0.63	-0.3
2,107,510	-		GFF2070	0.64	+0.0
2,107,510	-		GFF2070	0.64	-1.1
2,107,510	-		GFF2070	0.64	-0.0
2,107,549	+		GFF2070	0.67	-0.1
2,107,549	+		GFF2070	0.67	-1.3
2,107,549	+		GFF2070	0.67	-0.9
2,107,549	+		GFF2070	0.67	-0.0
2,107,558	+		GFF2070	0.67	-1.5
2,107,558	+		GFF2070	0.67	-1.5
2,107,558	+		GFF2070	0.67	-1.0
2,107,561	-		GFF2070	0.67	+0.8
2,107,566	+		GFF2070	0.68	-0.5
2,107,566	-		GFF2070	0.68	+0.9
2,107,566	-		GFF2070	0.68	+1.0
2,107,566	-		GFF2070	0.68	+0.1
2,107,566	-		GFF2070	0.68	-1.6
2,107,593	-		GFF2070	0.70	+0.9
2,107,603	+		GFF2070	0.71	-0.4
2,107,608	-		GFF2070	0.71	-0.7
2,107,622	+		GFF2070	0.72	+0.8
2,107,623	+		GFF2070	0.72	+0.4
2,107,623	-		GFF2070	0.72	+0.1
2,107,635	+		GFF2070	0.73	-1.5
2,107,635	+		GFF2070	0.73	-0.4
2,107,635	+		GFF2070	0.73	+0.9
2,107,635	+		GFF2070	0.73	+1.7
2,107,635	+		GFF2070	0.73	-0.3
2,107,635	+		GFF2070	0.73	+0.3
2,107,635	+		GFF2070	0.73	+1.0
2,107,635	+		GFF2070	0.73	-0.6
2,107,635	+		GFF2070	0.73	-1.5
2,107,643	-		GFF2070	0.73	+0.1
2,107,643	-		GFF2070	0.73	-0.6
2,107,643	-		GFF2070	0.73	-0.2
2,107,643	-		GFF2070	0.73	-0.4
2,107,643	-		GFF2070	0.73	+0.5
2,107,643	-		GFF2070	0.73	-0.5
2,107,643	-		GFF2070	0.73	-2.1
2,107,658	-		GFF2070	0.75	+0.9
2,107,663	+		GFF2070	0.75	-1.0
2,107,697	-		GFF2070	0.78	-2.1
2,107,766	+		GFF2070	0.83	-0.2
2,107,767	+		GFF2070	0.83	-1.1
2,107,779	+		GFF2070	0.84	+0.3
2,107,787	-		GFF2070	0.84	+0.3
2,107,833	-		GFF2070	0.88	-0.0
2,107,914	+				+0.0
2,107,924	+				+1.8
2,107,932	-				-1.3
2,107,932	-				-2.0
2,107,933	+				+0.0
2,107,933	+				+0.6
2,107,933	+				-0.6
2,107,934	+				-0.1
2,107,941	-				-0.2
2,107,941	-				+0.2
2,107,941	-				+1.3
2,107,941	-				-1.5
2,107,941	-				+0.5
2,107,941	-				+1.1
2,107,941	-				-1.4
2,107,984	+				+0.6
2,107,993	+				-1.8
2,107,993	+				-0.5
2,107,993	+				-1.0
2,107,993	+				-0.1
2,107,993	+				-1.9
2,107,994	+				+0.0
2,107,996	-				-0.3
2,108,001	-				-0.3
2,108,001	-				+1.2
2,108,001	-				-2.2
2,108,002	-				+0.0
2,108,020	+				+0.0
2,108,021	-				+0.1
2,108,028	+				-0.5
2,108,064	-		GFF2071	0.10	+0.3
2,108,080	+		GFF2071	0.14	-1.3
2,108,121	+		GFF2071	0.23	+1.6
2,108,129	+		GFF2071	0.24	-0.9
2,108,130	-		GFF2071	0.25	-1.3
2,108,130	-		GFF2071	0.25	+1.4
2,108,130	-		GFF2071	0.25	+0.5
2,108,130	-		GFF2071	0.25	+1.4
2,108,130	-		GFF2071	0.25	+1.2
2,108,130	-		GFF2071	0.25	-1.3
2,108,274	+		GFF2071	0.55	-1.1
2,108,282	-		GFF2071	0.57	-1.9
2,108,282	-		GFF2071	0.57	+0.3
2,108,318	-		GFF2071	0.65	-0.3
2,108,332	+		GFF2071	0.68	+0.6
2,108,332	+		GFF2071	0.68	-1.7
2,108,380	+		GFF2071	0.78	+0.9
2,108,380	+		GFF2071	0.78	+0.5
2,108,388	-		GFF2071	0.80	-1.1
2,108,416	+		GFF2071	0.86	-2.1
2,108,416	+		GFF2071	0.86	-0.4
2,108,416	+		GFF2071	0.86	+0.5
2,108,421	+		GFF2071	0.87	-0.7
2,108,424	-		GFF2071	0.88	-0.6
2,108,424	-		GFF2071	0.88	+1.2
2,108,424	-		GFF2071	0.88	-0.7
2,108,424	-		GFF2071	0.88	-0.2
2,108,424	-		GFF2071	0.88	-0.7
2,108,426	-		GFF2071	0.88	-0.1
2,108,439	-				+1.5
2,108,466	-				-0.1
2,108,486	+				-1.0
2,108,537	-				-0.6
2,108,553	-				-1.6
2,108,563	+				-0.3
2,108,563	+				-0.5
2,108,563	+				-1.3
2,108,571	-				-0.6
2,108,571	-				-0.6
2,108,573	+				-0.3
2,108,597	+		GFF2072	0.11	+2.4
2,108,597	+		GFF2072	0.11	-0.5
2,108,608	+		GFF2072	0.12	-0.1
2,108,611	-		GFF2072	0.13	-1.6
2,108,616	-		GFF2072	0.14	+0.8
2,108,653	+		GFF2072	0.19	-1.5
2,108,654	+		GFF2072	0.19	+0.7
2,108,654	+		GFF2072	0.19	-0.1
2,108,654	+		GFF2072	0.19	+1.6
2,108,658	+		GFF2072	0.20	-0.8
2,108,662	-		GFF2072	0.21	-1.3
2,108,662	-		GFF2072	0.21	-0.2
2,108,662	-		GFF2072	0.21	-1.5
2,108,664	+		GFF2072	0.21	-0.3
2,108,672	-		GFF2072	0.22	+0.4
2,108,692	+		GFF2072	0.25	-2.2
2,108,710	-		GFF2072	0.28	+0.4
2,108,750	-		GFF2072	0.34	+0.4
2,108,761	+		GFF2072	0.36	-0.3
2,108,761	+		GFF2072	0.36	-0.3
2,108,761	+		GFF2072	0.36	-0.7
2,108,761	+		GFF2072	0.36	-0.3
2,108,761	+		GFF2072	0.36	+1.5
2,108,761	+		GFF2072	0.36	+1.6
2,108,761	+		GFF2072	0.36	+1.5
2,108,761	+		GFF2072	0.36	-0.2
2,108,761	+		GFF2072	0.36	+0.9
2,108,761	+		GFF2072	0.36	+0.3
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