Strain Fitness in Sphingobium sp. HT1-2 around GFF2067

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,103,660	+		GFF2065	0.79	-0.7
2,103,660	+		GFF2065	0.79	+1.3
2,103,668	-		GFF2065	0.80	-0.9
2,103,668	-		GFF2065	0.80	-1.3
2,103,693	-		GFF2065	0.82	+0.7
2,103,694	-		GFF2065	0.82	+0.5
2,103,704	-		GFF2065	0.83	-0.3
2,103,729	+		GFF2065	0.85	+0.4
2,103,734	+		GFF2065	0.86	-0.2
2,103,742	-		GFF2065	0.86	+0.6
2,103,757	-		GFF2065	0.88	-0.5
2,103,762	-		GFF2065	0.88	+0.6
2,103,762	-		GFF2065	0.88	+0.1
2,103,777	+		GFF2065	0.89	-0.7
2,103,777	+		GFF2065	0.89	-0.9
2,103,785	-				+0.3
2,103,785	-				+0.9
2,103,785	-				-0.5
2,103,787	+				-0.7
2,103,787	+				-0.3
2,103,787	+				+0.5
2,103,787	+				-0.3
2,103,787	+				+0.2
2,103,787	+				+0.1
2,103,787	+				-0.6
2,103,787	+				-0.7
2,103,787	+				+1.1
2,103,795	-				-0.2
2,103,795	-				+0.7
2,103,795	-				+0.8
2,103,795	-				-0.2
2,103,795	-				-0.1
2,103,795	-				-0.1
2,103,795	-				-0.7
2,103,795	-				+0.4
2,103,822	-				-1.4
2,103,835	+				-0.0
2,103,835	+				-0.3
2,103,843	-				-2.2
2,103,877	-				+0.8
2,103,882	-				+1.6
2,103,887	-				+1.1
2,103,891	+				+0.0
2,103,891	+				+0.7
2,103,899	-				-0.3
2,103,995	+				+1.8
2,103,996	-				-2.8
2,104,087	+				-0.1
2,104,090	+				+0.8
2,104,090	+				-0.2
2,104,098	-				-1.2
2,104,110	-		GFF2066	0.11	-0.3
2,104,118	+		GFF2066	0.13	+0.2
2,104,118	+		GFF2066	0.13	+0.4
2,104,136	+		GFF2066	0.16	-0.2
2,104,141	+		GFF2066	0.17	-1.0
2,104,153	+		GFF2066	0.19	-1.7
2,104,153	+		GFF2066	0.19	+0.3
2,104,153	+		GFF2066	0.19	-1.3
2,104,153	+		GFF2066	0.19	+0.0
2,104,153	+		GFF2066	0.19	-2.3
2,104,153	+		GFF2066	0.19	-1.9
2,104,153	+		GFF2066	0.19	-0.2
2,104,161	-		GFF2066	0.21	-0.4
2,104,161	-		GFF2066	0.21	+0.7
2,104,161	-		GFF2066	0.21	-0.3
2,104,171	+		GFF2066	0.22	-0.1
2,104,179	+		GFF2066	0.24	-0.4
2,104,201	+		GFF2066	0.28	-0.3
2,104,206	+		GFF2066	0.29	+0.3
2,104,206	+		GFF2066	0.29	+1.2
2,104,214	-		GFF2066	0.30	+0.0
2,104,214	-		GFF2066	0.30	-1.7
2,104,244	+		GFF2066	0.36	+0.1
2,104,244	+		GFF2066	0.36	-1.6
2,104,269	-		GFF2066	0.40	-0.1
2,104,349	-		GFF2066	0.55	-0.4
2,104,373	-		GFF2066	0.59	-1.3
2,104,387	+		GFF2066	0.62	-0.3
2,104,387	+		GFF2066	0.62	-0.3
2,104,387	+		GFF2066	0.62	+0.5
2,104,387	+		GFF2066	0.62	-0.4
2,104,411	+		GFF2066	0.66	+0.2
2,104,411	+		GFF2066	0.66	-0.3
2,104,417	+		GFF2066	0.67	+0.5
2,104,417	+		GFF2066	0.67	+0.7
2,104,417	+		GFF2066	0.67	-0.3
2,104,417	+		GFF2066	0.67	+0.3
2,104,418	+		GFF2066	0.68	+0.3
2,104,431	-		GFF2066	0.70	-1.3
2,104,473	+		GFF2066	0.78	-1.9
2,104,491	+		GFF2066	0.81	-0.3
2,104,491	+		GFF2066	0.81	+0.4
2,104,491	+		GFF2066	0.81	+0.0
2,104,491	+		GFF2066	0.81	-0.8
2,104,491	+		GFF2066	0.81	+0.3
2,104,491	+		GFF2066	0.81	+0.1
2,104,491	+		GFF2066	0.81	+0.4
2,104,499	-		GFF2066	0.82	+0.2
2,104,499	-		GFF2066	0.82	-1.4
2,104,499	-		GFF2066	0.82	-0.6
2,104,499	-		GFF2066	0.82	-1.2
2,104,499	-		GFF2066	0.82	-1.6
2,104,499	-		GFF2066	0.82	+1.3
2,104,499	-		GFF2066	0.82	+1.4
2,104,499	-		GFF2066	0.82	-0.7
2,104,499	-		GFF2066	0.82	+1.4
2,104,499	-		GFF2066	0.82	-0.6
2,104,521	-		GFF2066	0.86	-1.6
2,104,526	-		GFF2066	0.87	+0.0
2,104,526	-		GFF2066	0.87	+1.8
2,104,564	+				+0.6
2,104,582	+				+0.8
2,104,589	+				+0.6
2,104,590	-				-0.1
2,104,590	-				+0.9
2,104,596	-				-0.3
2,104,615	-				-0.4
2,104,691	-				-1.6
2,104,722	-				-1.0
2,104,730	-				-3.0
2,104,731	+				-2.1
2,104,739	-				-0.3
2,104,748	+				-0.2
2,104,749	+				-2.2
2,104,749	+				+0.3
2,104,751	-				-1.4
2,104,756	-				+0.2
2,104,756	-				+0.4
2,104,757	-				+0.0
2,104,757	-				+0.1
2,104,757	-				-1.8
2,104,757	-				-0.2
2,104,757	-				-0.6
2,104,776	-		GFF2067	0.12	-0.1
2,104,776	-		GFF2067	0.12	+0.9
2,104,781	+		GFF2067	0.12	+0.6
2,104,789	-		GFF2067	0.13	+0.2
2,104,789	-		GFF2067	0.13	+0.2
2,104,789	-		GFF2067	0.13	+0.3
2,104,789	-		GFF2067	0.13	-1.1
2,104,802	-		GFF2067	0.14	+0.4
2,104,812	+		GFF2067	0.15	+0.7
2,104,827	-		GFF2067	0.17	-1.9
2,104,874	+		GFF2067	0.21	-2.1
2,104,882	-		GFF2067	0.22	+0.8
2,104,900	+		GFF2067	0.24	+0.7
2,104,908	-		GFF2067	0.25	-1.3
2,104,928	+		GFF2067	0.27	+0.6
2,104,946	+		GFF2067	0.28	-0.6
2,104,948	-		GFF2067	0.29	-0.2
2,104,968	+		GFF2067	0.30	+0.7
2,104,968	+		GFF2067	0.30	-0.2
2,104,981	-		GFF2067	0.32	+0.2
2,104,987	+		GFF2067	0.32	+0.4
2,104,995	-		GFF2067	0.33	-0.6
2,104,997	+		GFF2067	0.33	-1.3
2,104,997	+		GFF2067	0.33	-0.1
2,105,005	-		GFF2067	0.34	-1.0
2,105,026	-		GFF2067	0.36	+0.0
2,105,028	+		GFF2067	0.36	+0.3
2,105,029	+		GFF2067	0.36	+0.5
2,105,035	+		GFF2067	0.37	-0.9
2,105,035	+		GFF2067	0.37	+0.1
2,105,043	-		GFF2067	0.38	-0.7
2,105,088	+		GFF2067	0.42	-1.3
2,105,096	-		GFF2067	0.43	-1.7
2,105,132	-		GFF2067	0.47	-0.3
2,105,133	+		GFF2067	0.47	-2.3
2,105,185	+		GFF2067	0.52	+1.1
2,105,190	+		GFF2067	0.52	+0.6
2,105,192	-		GFF2067	0.52	-1.2
2,105,193	-		GFF2067	0.52	+0.1
2,105,202	-		GFF2067	0.53	+1.0
2,105,202	-		GFF2067	0.53	-1.7
2,105,203	-		GFF2067	0.53	-0.2
2,105,205	+		GFF2067	0.54	+0.1
2,105,235	+		GFF2067	0.57	-1.3
2,105,265	+		GFF2067	0.60	+1.1
2,105,265	+		GFF2067	0.60	-0.8
2,105,275	+		GFF2067	0.61	-0.4
2,105,293	+		GFF2067	0.62	+0.5
2,105,293	+		GFF2067	0.62	+0.0
2,105,293	-		GFF2067	0.62	-1.0
2,105,301	-		GFF2067	0.63	-0.6
2,105,301	-		GFF2067	0.63	+1.0
2,105,301	-		GFF2067	0.63	-1.3
2,105,301	-		GFF2067	0.63	-0.4
2,105,306	-		GFF2067	0.64	-1.1
2,105,325	-		GFF2067	0.65	+0.3
2,105,332	-		GFF2067	0.66	-1.7
2,105,339	+		GFF2067	0.67	-1.9
2,105,357	-		GFF2067	0.69	-0.6
2,105,393	-		GFF2067	0.72	+0.7
2,105,436	-		GFF2067	0.76	+0.1
2,105,458	-		GFF2067	0.78	-0.5
2,105,470	+		GFF2067	0.80	-0.7
2,105,543	-		GFF2067	0.87	-1.6
2,105,553	+		GFF2067	0.88	-1.1
2,105,575	+		GFF2067	0.90	-0.6
2,105,632	+				-0.1
2,105,671	+				-0.2
2,105,671	+				-0.2
2,105,679	-				+0.3
2,105,681	+				+0.4
2,105,681	+				-1.1
2,105,681	+				-2.2
2,105,699	-				-0.7
2,105,720	-				-1.2
2,105,736	+				-1.7
2,105,740	+		GFF2068	0.11	-1.2
2,105,746	+		GFF2068	0.13	+0.3
2,105,748	-		GFF2068	0.13	+0.4
2,105,757	-		GFF2068	0.16	+0.1
2,105,778	-		GFF2068	0.21	-0.6
2,105,778	-		GFF2068	0.21	+0.6
2,105,827	-		GFF2068	0.34	+0.4
2,105,827	-		GFF2068	0.34	-0.7
2,105,853	-		GFF2068	0.41	-0.7
2,105,855	+		GFF2068	0.42	+0.0
2,105,864	-		GFF2068	0.44	+0.3
2,105,864	-		GFF2068	0.44	-1.7
2,105,886	+		GFF2068	0.50	-1.0
2,105,906	-		GFF2068	0.56	-0.2
2,105,912	-		GFF2068	0.57	-0.4
2,105,930	-		GFF2068	0.62	-0.3
2,105,941	-		GFF2068	0.65	-1.4
2,105,958	+		GFF2068	0.70	-1.7
2,106,029	+		GFF2068	0.89	-0.7
2,106,029	+		GFF2068	0.89	+1.3
2,106,029	+		GFF2068	0.89	+0.1
2,106,036	-				-1.4
2,106,050	+				-1.8
2,106,051	+				-0.9
2,106,051	+				-1.6
2,106,051	+				+0.4
2,106,051	+				-1.6
2,106,059	-				-1.3
2,106,063	-				-0.2
2,106,064	-				-1.3
2,106,086	-				-1.3
2,106,090	+				-0.6
2,106,090	+				+0.3
2,106,090	+				+0.6
2,106,096	+				+0.2
2,106,096	+				+0.2
2,106,096	+				-1.8
2,106,096	-				-1.6
2,106,098	-				-0.9
2,106,098	-				-1.4
2,106,098	-				-1.8
2,106,104	-				+1.6
2,106,104	-				-0.1
2,106,105	-				+0.7
2,106,116	+				+0.1
2,106,124	+				+1.1
2,106,124	-				+0.4
2,106,124	-				-0.5
2,106,124	-				-0.2
2,106,124	-				-1.2
2,106,132	-				-1.9
2,106,156	-				-0.6
2,106,174	+		GFF2069	0.13	+0.4
2,106,187	+		GFF2069	0.16	-0.1
2,106,195	+		GFF2069	0.18	+0.8
2,106,195	-		GFF2069	0.18	-0.2
2,106,195	-		GFF2069	0.18	+0.9
2,106,195	-		GFF2069	0.18	-0.3
2,106,195	-		GFF2069	0.18	-1.3
2,106,203	-		GFF2069	0.20	-0.7
2,106,231	-		GFF2069	0.27	-1.0
2,106,248	+		GFF2069	0.31	+0.3
2,106,266	+		GFF2069	0.35	+0.1
2,106,266	+		GFF2069	0.35	-1.1
2,106,298	-		GFF2069	0.43	-0.3
2,106,298	-		GFF2069	0.43	+1.2
2,106,306	-		GFF2069	0.45	-0.5
2,106,323	-		GFF2069	0.49	-0.6
2,106,349	-		GFF2069	0.56	+0.0
2,106,349	-		GFF2069	0.56	-0.3
2,106,349	-		GFF2069	0.56	+0.1
2,106,372	-		GFF2069	0.61	-0.0
2,106,420	+		GFF2069	0.73	+0.8
2,106,431	+		GFF2069	0.76	-1.3
2,106,431	+		GFF2069	0.76	-0.3
2,106,431	+		GFF2069	0.76	-0.1
2,106,431	+		GFF2069	0.76	-0.2
2,106,431	+		GFF2069	0.76	+0.3
2,106,439	-		GFF2069	0.78	+0.6
2,106,439	-		GFF2069	0.78	+0.3
2,106,439	-		GFF2069	0.78	-0.6
2,106,439	-		GFF2069	0.78	-1.8
2,106,439	-		GFF2069	0.78	-0.0
2,106,439	-		GFF2069	0.78	-1.4
2,106,439	-		GFF2069	0.78	-1.1
2,106,439	-		GFF2069	0.78	-0.3
2,106,439	-		GFF2069	0.78	+0.0
2,106,456	-		GFF2069	0.82	+2.0
2,106,464	+		GFF2069	0.84	-0.6
2,106,472	-		GFF2069	0.86	-0.7
2,106,484	-		GFF2069	0.89	-0.7
2,106,489	-				-0.4
2,106,511	+				-2.1
2,106,515	-				-0.0
2,106,519	-				-0.6
2,106,529	-				-0.1
2,106,540	+				-1.1
2,106,540	+				+0.4
2,106,548	+				+0.4
2,106,548	-				+0.0
2,106,548	-				+0.1
2,106,548	-				-0.8
2,106,563	+				-1.2
2,106,563	+				-0.3
2,106,563	+				+0.2
2,106,571	-				-2.1
2,106,571	-				+0.3
2,106,571	-				-0.1
2,106,571	-				-0.1
2,106,571	-				+1.5
2,106,571	-				+1.4
2,106,571	-				-0.1
2,106,581	-				-1.7
2,106,596	-				+0.6
2,106,662	+				+1.0
2,106,662	+				-0.7
2,106,670	-				+1.0
2,106,671	+				-0.4