Strain Fitness in Sphingobium sp. HT1-2 around GFF2066

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,103,064	+		GFF2065	0.28	-1.5
2,103,072	-		GFF2065	0.28	-1.2
2,103,072	-		GFF2065	0.28	-0.4
2,103,072	-		GFF2065	0.28	-0.4
2,103,086	+		GFF2065	0.30	-0.7
2,103,094	-		GFF2065	0.30	-2.5
2,103,103	-		GFF2065	0.31	-1.7
2,103,113	-		GFF2065	0.32	+1.3
2,103,114	+		GFF2065	0.32	-1.5
2,103,114	+		GFF2065	0.32	+0.3
2,103,142	+		GFF2065	0.34	-0.3
2,103,149	+		GFF2065	0.35	-0.5
2,103,168	+		GFF2065	0.37	+0.9
2,103,197	-		GFF2065	0.39	-0.9
2,103,202	+		GFF2065	0.40	-0.5
2,103,202	+		GFF2065	0.40	-0.4
2,103,202	+		GFF2065	0.40	+0.0
2,103,202	+		GFF2065	0.40	+0.0
2,103,202	+		GFF2065	0.40	-0.5
2,103,202	+		GFF2065	0.40	-1.7
2,103,207	+		GFF2065	0.40	+1.4
2,103,208	-		GFF2065	0.40	+1.5
2,103,210	-		GFF2065	0.40	+0.8
2,103,210	-		GFF2065	0.40	-0.3
2,103,210	-		GFF2065	0.40	-0.9
2,103,210	-		GFF2065	0.40	-0.6
2,103,210	-		GFF2065	0.40	-0.1
2,103,215	-		GFF2065	0.41	+0.5
2,103,215	-		GFF2065	0.41	+0.1
2,103,215	-		GFF2065	0.41	-2.1
2,103,230	-		GFF2065	0.42	-0.5
2,103,231	+		GFF2065	0.42	-0.2
2,103,232	+		GFF2065	0.42	+0.5
2,103,235	-		GFF2065	0.42	-0.2
2,103,245	-		GFF2065	0.43	-1.5
2,103,245	-		GFF2065	0.43	-0.7
2,103,245	-		GFF2065	0.43	-0.2
2,103,254	+		GFF2065	0.44	-0.5
2,103,259	+		GFF2065	0.45	+1.3
2,103,267	-		GFF2065	0.45	-0.5
2,103,289	-		GFF2065	0.47	-0.0
2,103,308	-		GFF2065	0.49	-1.7
2,103,318	+		GFF2065	0.50	+0.0
2,103,339	-		GFF2065	0.51	+0.3
2,103,351	+		GFF2065	0.53	+0.2
2,103,351	+		GFF2065	0.53	-1.7
2,103,351	+		GFF2065	0.53	+0.3
2,103,351	+		GFF2065	0.53	-0.1
2,103,351	+		GFF2065	0.53	+0.5
2,103,359	-		GFF2065	0.53	-0.3
2,103,359	-		GFF2065	0.53	+0.2
2,103,359	-		GFF2065	0.53	+0.1
2,103,361	-		GFF2065	0.53	+0.0
2,103,367	+		GFF2065	0.54	-0.7
2,103,385	+		GFF2065	0.55	+0.1
2,103,390	+		GFF2065	0.56	+0.5
2,103,392	+		GFF2065	0.56	-0.3
2,103,392	+		GFF2065	0.56	-0.4
2,103,392	+		GFF2065	0.56	+0.4
2,103,392	+		GFF2065	0.56	-1.0
2,103,392	+		GFF2065	0.56	-1.7
2,103,398	+		GFF2065	0.57	-1.1
2,103,400	-		GFF2065	0.57	-1.7
2,103,400	-		GFF2065	0.57	-1.3
2,103,400	-		GFF2065	0.57	-0.2
2,103,400	-		GFF2065	0.57	+0.4
2,103,400	-		GFF2065	0.57	+0.5
2,103,400	-		GFF2065	0.57	-0.8
2,103,405	-		GFF2065	0.57	-0.1
2,103,416	-		GFF2065	0.58	-0.7
2,103,427	+		GFF2065	0.59	+0.7
2,103,448	+		GFF2065	0.61	-2.1
2,103,448	-		GFF2065	0.61	+0.5
2,103,456	-		GFF2065	0.62	-1.0
2,103,456	-		GFF2065	0.62	-0.3
2,103,460	-		GFF2065	0.62	+1.1
2,103,463	-		GFF2065	0.62	+1.1
2,103,487	-		GFF2065	0.64	+0.6
2,103,489	+		GFF2065	0.64	-1.0
2,103,497	-		GFF2065	0.65	-0.3
2,103,498	-		GFF2065	0.65	+0.1
2,103,533	+		GFF2065	0.68	+0.3
2,103,541	-		GFF2065	0.69	-0.6
2,103,541	-		GFF2065	0.69	-1.6
2,103,541	-		GFF2065	0.69	-0.2
2,103,548	+		GFF2065	0.70	-0.7
2,103,548	+		GFF2065	0.70	-0.5
2,103,556	-		GFF2065	0.70	-1.4
2,103,570	+		GFF2065	0.71	-0.3
2,103,570	+		GFF2065	0.71	-1.0
2,103,572	+		GFF2065	0.72	-0.6
2,103,572	+		GFF2065	0.72	-2.1
2,103,572	+		GFF2065	0.72	+0.8
2,103,578	-		GFF2065	0.72	-1.1
2,103,580	-		GFF2065	0.72	-1.6
2,103,618	+		GFF2065	0.76	+0.1
2,103,626	-		GFF2065	0.76	-0.1
2,103,630	-		GFF2065	0.77	-0.0
2,103,660	+		GFF2065	0.79	-0.7
2,103,660	+		GFF2065	0.79	+1.3
2,103,668	-		GFF2065	0.80	-0.9
2,103,668	-		GFF2065	0.80	-1.3
2,103,693	-		GFF2065	0.82	+0.7
2,103,694	-		GFF2065	0.82	+0.5
2,103,704	-		GFF2065	0.83	-0.3
2,103,729	+		GFF2065	0.85	+0.4
2,103,734	+		GFF2065	0.86	-0.2
2,103,742	-		GFF2065	0.86	+0.6
2,103,757	-		GFF2065	0.88	-0.5
2,103,762	-		GFF2065	0.88	+0.6
2,103,762	-		GFF2065	0.88	+0.1
2,103,777	+		GFF2065	0.89	-0.7
2,103,777	+		GFF2065	0.89	-0.9
2,103,785	-				+0.3
2,103,785	-				+0.9
2,103,785	-				-0.5
2,103,787	+				-0.7
2,103,787	+				-0.3
2,103,787	+				+0.5
2,103,787	+				-0.3
2,103,787	+				+0.2
2,103,787	+				+0.1
2,103,787	+				-0.6
2,103,787	+				-0.7
2,103,787	+				+1.1
2,103,795	-				-0.2
2,103,795	-				+0.7
2,103,795	-				+0.8
2,103,795	-				-0.2
2,103,795	-				-0.1
2,103,795	-				-0.1
2,103,795	-				-0.7
2,103,795	-				+0.4
2,103,822	-				-1.4
2,103,835	+				-0.0
2,103,835	+				-0.3
2,103,843	-				-2.2
2,103,877	-				+0.8
2,103,882	-				+1.6
2,103,887	-				+1.1
2,103,891	+				+0.0
2,103,891	+				+0.7
2,103,899	-				-0.3
2,103,995	+				+1.8
2,103,996	-				-2.8
2,104,087	+				-0.1
2,104,090	+				+0.8
2,104,090	+				-0.2
2,104,098	-				-1.2
2,104,110	-		GFF2066	0.11	-0.3
2,104,118	+		GFF2066	0.13	+0.2
2,104,118	+		GFF2066	0.13	+0.4
2,104,136	+		GFF2066	0.16	-0.2
2,104,141	+		GFF2066	0.17	-1.0
2,104,153	+		GFF2066	0.19	-1.7
2,104,153	+		GFF2066	0.19	+0.3
2,104,153	+		GFF2066	0.19	-1.3
2,104,153	+		GFF2066	0.19	+0.0
2,104,153	+		GFF2066	0.19	-2.3
2,104,153	+		GFF2066	0.19	-1.9
2,104,153	+		GFF2066	0.19	-0.2
2,104,161	-		GFF2066	0.21	-0.4
2,104,161	-		GFF2066	0.21	+0.7
2,104,161	-		GFF2066	0.21	-0.3
2,104,171	+		GFF2066	0.22	-0.1
2,104,179	+		GFF2066	0.24	-0.4
2,104,201	+		GFF2066	0.28	-0.3
2,104,206	+		GFF2066	0.29	+0.3
2,104,206	+		GFF2066	0.29	+1.2
2,104,214	-		GFF2066	0.30	+0.0
2,104,214	-		GFF2066	0.30	-1.7
2,104,244	+		GFF2066	0.36	+0.1
2,104,244	+		GFF2066	0.36	-1.6
2,104,269	-		GFF2066	0.40	-0.1
2,104,349	-		GFF2066	0.55	-0.4
2,104,373	-		GFF2066	0.59	-1.3
2,104,387	+		GFF2066	0.62	-0.3
2,104,387	+		GFF2066	0.62	-0.3
2,104,387	+		GFF2066	0.62	+0.5
2,104,387	+		GFF2066	0.62	-0.4
2,104,411	+		GFF2066	0.66	+0.2
2,104,411	+		GFF2066	0.66	-0.3
2,104,417	+		GFF2066	0.67	+0.5
2,104,417	+		GFF2066	0.67	+0.7
2,104,417	+		GFF2066	0.67	-0.3
2,104,417	+		GFF2066	0.67	+0.3
2,104,418	+		GFF2066	0.68	+0.3
2,104,431	-		GFF2066	0.70	-1.3
2,104,473	+		GFF2066	0.78	-1.9
2,104,491	+		GFF2066	0.81	-0.3
2,104,491	+		GFF2066	0.81	+0.4
2,104,491	+		GFF2066	0.81	+0.0
2,104,491	+		GFF2066	0.81	-0.8
2,104,491	+		GFF2066	0.81	+0.3
2,104,491	+		GFF2066	0.81	+0.1
2,104,491	+		GFF2066	0.81	+0.4
2,104,499	-		GFF2066	0.82	+0.2
2,104,499	-		GFF2066	0.82	-1.4
2,104,499	-		GFF2066	0.82	-0.6
2,104,499	-		GFF2066	0.82	-1.2
2,104,499	-		GFF2066	0.82	-1.6
2,104,499	-		GFF2066	0.82	+1.3
2,104,499	-		GFF2066	0.82	+1.4
2,104,499	-		GFF2066	0.82	-0.7
2,104,499	-		GFF2066	0.82	+1.4
2,104,499	-		GFF2066	0.82	-0.6
2,104,521	-		GFF2066	0.86	-1.6
2,104,526	-		GFF2066	0.87	+0.0
2,104,526	-		GFF2066	0.87	+1.8
2,104,564	+				+0.6
2,104,582	+				+0.8
2,104,589	+				+0.6
2,104,590	-				-0.1
2,104,590	-				+0.9
2,104,596	-				-0.3
2,104,615	-				-0.4
2,104,691	-				-1.6
2,104,722	-				-1.0
2,104,730	-				-3.0
2,104,731	+				-2.1
2,104,739	-				-0.3
2,104,748	+				-0.2
2,104,749	+				-2.2
2,104,749	+				+0.3
2,104,751	-				-1.4
2,104,756	-				+0.2
2,104,756	-				+0.4
2,104,757	-				+0.0
2,104,757	-				+0.1
2,104,757	-				-1.8
2,104,757	-				-0.2
2,104,757	-				-0.6
2,104,776	-		GFF2067	0.12	-0.1
2,104,776	-		GFF2067	0.12	+0.9
2,104,781	+		GFF2067	0.12	+0.6
2,104,789	-		GFF2067	0.13	+0.2
2,104,789	-		GFF2067	0.13	+0.2
2,104,789	-		GFF2067	0.13	+0.3
2,104,789	-		GFF2067	0.13	-1.1
2,104,802	-		GFF2067	0.14	+0.4
2,104,812	+		GFF2067	0.15	+0.7
2,104,827	-		GFF2067	0.17	-1.9
2,104,874	+		GFF2067	0.21	-2.1
2,104,882	-		GFF2067	0.22	+0.8
2,104,900	+		GFF2067	0.24	+0.7
2,104,908	-		GFF2067	0.25	-1.3
2,104,928	+		GFF2067	0.27	+0.6
2,104,946	+		GFF2067	0.28	-0.6
2,104,948	-		GFF2067	0.29	-0.2
2,104,968	+		GFF2067	0.30	+0.7
2,104,968	+		GFF2067	0.30	-0.2
2,104,981	-		GFF2067	0.32	+0.2
2,104,987	+		GFF2067	0.32	+0.4
2,104,995	-		GFF2067	0.33	-0.6
2,104,997	+		GFF2067	0.33	-1.3
2,104,997	+		GFF2067	0.33	-0.1
2,105,005	-		GFF2067	0.34	-1.0
2,105,026	-		GFF2067	0.36	+0.0
2,105,028	+		GFF2067	0.36	+0.3
2,105,029	+		GFF2067	0.36	+0.5
2,105,035	+		GFF2067	0.37	-0.9
2,105,035	+		GFF2067	0.37	+0.1
2,105,043	-		GFF2067	0.38	-0.7
2,105,088	+		GFF2067	0.42	-1.3
2,105,096	-		GFF2067	0.43	-1.7
2,105,132	-		GFF2067	0.47	-0.3
2,105,133	+		GFF2067	0.47	-2.3
2,105,185	+		GFF2067	0.52	+1.1
2,105,190	+		GFF2067	0.52	+0.6
2,105,192	-		GFF2067	0.52	-1.2
2,105,193	-		GFF2067	0.52	+0.1
2,105,202	-		GFF2067	0.53	+1.0
2,105,202	-		GFF2067	0.53	-1.7
2,105,203	-		GFF2067	0.53	-0.2
2,105,205	+		GFF2067	0.54	+0.1
2,105,235	+		GFF2067	0.57	-1.3
2,105,265	+		GFF2067	0.60	+1.1
2,105,265	+		GFF2067	0.60	-0.8
2,105,275	+		GFF2067	0.61	-0.4
2,105,293	+		GFF2067	0.62	+0.5
2,105,293	+		GFF2067	0.62	+0.0
2,105,293	-		GFF2067	0.62	-1.0
2,105,301	-		GFF2067	0.63	-0.6
2,105,301	-		GFF2067	0.63	+1.0
2,105,301	-		GFF2067	0.63	-1.3
2,105,301	-		GFF2067	0.63	-0.4
2,105,306	-		GFF2067	0.64	-1.1
2,105,325	-		GFF2067	0.65	+0.3
2,105,332	-		GFF2067	0.66	-1.7
2,105,339	+		GFF2067	0.67	-1.9
2,105,357	-		GFF2067	0.69	-0.6
2,105,393	-		GFF2067	0.72	+0.7
2,105,436	-		GFF2067	0.76	+0.1
2,105,458	-		GFF2067	0.78	-0.5
2,105,470	+		GFF2067	0.80	-0.7
2,105,543	-		GFF2067	0.87	-1.6
2,105,553	+		GFF2067	0.88	-1.1
2,105,575	+		GFF2067	0.90	-0.6