Strain Fitness in Sphingobium sp. HT1-2 around GFF2050

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,086,632	+		GFF2048	0.69	-0.6
2,086,632	+		GFF2048	0.69	+0.8
2,086,635	-		GFF2048	0.70	+1.7
2,086,640	-		GFF2048	0.71	-0.5
2,086,640	-		GFF2048	0.71	-0.7
2,086,667	+		GFF2048	0.77	+0.2
2,086,692	+		GFF2048	0.84	-1.6
2,086,700	-		GFF2048	0.86	-0.8
2,086,707	+		GFF2048	0.87	-0.0
2,086,717	+		GFF2048	0.90	+0.5
2,086,719	-				+1.9
2,086,727	+				+0.1
2,086,735	-				-0.6
2,086,735	-				-0.5
2,086,735	-				-0.8
2,086,778	+				-0.3
2,086,804	-				+0.4
2,086,804	-				-1.3
2,086,804	-				+1.1
2,086,828	+				+1.6
2,086,828	+				+0.4
2,086,830	+				-0.5
2,086,836	-				+0.7
2,086,836	-				-1.0
2,086,836	-				+0.4
2,086,843	-				-1.1
2,086,868	-				+0.6
2,086,870	+				-0.3
2,086,870	+				-0.3
2,086,870	+				+0.5
2,086,873	-				+0.3
2,086,878	-				+0.7
2,086,883	-				-0.1
2,086,883	-				+0.9
2,086,883	-				-1.4
2,086,886	-				+0.7
2,086,898	+				+0.4
2,086,898	+				-1.2
2,086,900	-				+0.3
2,086,902	+				-0.2
2,086,905	-		GFF2049	0.10	-1.4
2,086,905	-		GFF2049	0.10	+0.3
2,086,906	-		GFF2049	0.10	-0.5
2,086,913	-		GFF2049	0.11	-0.1
2,086,919	-		GFF2049	0.12	+0.1
2,086,919	-		GFF2049	0.12	-0.3
2,086,919	-		GFF2049	0.12	+0.4
2,086,952	+		GFF2049	0.16	+0.8
2,086,959	+		GFF2049	0.17	-0.1
2,086,959	+		GFF2049	0.17	-2.1
2,086,967	-		GFF2049	0.18	-0.1
2,086,967	-		GFF2049	0.18	-0.8
2,086,967	-		GFF2049	0.18	-0.1
2,086,967	-		GFF2049	0.18	-0.3
2,086,978	+		GFF2049	0.20	-0.3
2,086,986	-		GFF2049	0.21	-2.3
2,086,992	+		GFF2049	0.22	-0.6
2,086,992	+		GFF2049	0.22	-0.1
2,087,004	+		GFF2049	0.23	-0.7
2,087,008	-		GFF2049	0.24	+0.7
2,087,032	-		GFF2049	0.27	-1.2
2,087,032	-		GFF2049	0.27	+2.0
2,087,093	-		GFF2049	0.35	+1.0
2,087,120	+		GFF2049	0.38	-0.7
2,087,123	-		GFF2049	0.39	-1.2
2,087,181	+		GFF2049	0.46	+0.8
2,087,183	-		GFF2049	0.47	-1.2
2,087,183	-		GFF2049	0.47	-0.0
2,087,189	-		GFF2049	0.47	-0.8
2,087,189	-		GFF2049	0.47	-1.8
2,087,189	-		GFF2049	0.47	-0.9
2,087,211	-		GFF2049	0.50	+1.2
2,087,216	-		GFF2049	0.51	-0.5
2,087,218	+		GFF2049	0.51	+0.6
2,087,218	+		GFF2049	0.51	-1.2
2,087,218	+		GFF2049	0.51	-0.6
2,087,226	-		GFF2049	0.52	-0.0
2,087,265	+		GFF2049	0.57	+1.1
2,087,272	-		GFF2049	0.58	-1.0
2,087,287	+		GFF2049	0.60	-1.9
2,087,303	-		GFF2049	0.62	-1.2
2,087,324	-		GFF2049	0.65	-0.1
2,087,335	+		GFF2049	0.67	-1.4
2,087,335	+		GFF2049	0.67	-0.6
2,087,335	+		GFF2049	0.67	+0.1
2,087,335	+		GFF2049	0.67	+0.5
2,087,343	-		GFF2049	0.68	-2.4
2,087,343	-		GFF2049	0.68	-0.6
2,087,346	+		GFF2049	0.68	-0.1
2,087,346	+		GFF2049	0.68	-0.9
2,087,346	+		GFF2049	0.68	+1.4
2,087,354	-		GFF2049	0.69	-1.4
2,087,354	-		GFF2049	0.69	+0.1
2,087,356	+		GFF2049	0.69	-0.3
2,087,375	-		GFF2049	0.72	-0.5
2,087,382	+		GFF2049	0.73	-0.3
2,087,382	+		GFF2049	0.73	+0.6
2,087,385	-		GFF2049	0.73	+0.3
2,087,390	-		GFF2049	0.74	-0.6
2,087,390	-		GFF2049	0.74	+0.1
2,087,390	-		GFF2049	0.74	+0.4
2,087,390	-		GFF2049	0.74	-1.3
2,087,390	-		GFF2049	0.74	-2.2
2,087,390	-		GFF2049	0.74	-0.3
2,087,395	-		GFF2049	0.74	-0.1
2,087,446	+		GFF2049	0.81	-2.3
2,087,446	+		GFF2049	0.81	-1.4
2,087,446	+		GFF2049	0.81	-0.3
2,087,446	+		GFF2049	0.81	+0.2
2,087,446	+		GFF2049	0.81	-0.0
2,087,446	+		GFF2049	0.81	+0.3
2,087,446	+		GFF2049	0.81	-1.3
2,087,454	-		GFF2049	0.82	-0.2
2,087,454	-		GFF2049	0.82	-0.4
2,087,454	-		GFF2049	0.82	-0.1
2,087,454	-		GFF2049	0.82	+0.1
2,087,454	-		GFF2049	0.82	-2.7
2,087,454	-		GFF2049	0.82	-0.9
2,087,454	-		GFF2049	0.82	-1.9
2,087,454	-		GFF2049	0.82	-1.0
2,087,454	-		GFF2049	0.82	-0.3
2,087,454	-		GFF2049	0.82	-0.2
2,087,454	-		GFF2049	0.82	-0.2
2,087,454	-		GFF2049	0.82	-0.8
2,087,454	-		GFF2049	0.82	+0.3
2,087,460	+		GFF2049	0.83	+1.4
2,087,460	+		GFF2049	0.83	-0.3
2,087,464	-		GFF2049	0.83	-0.1
2,087,468	-		GFF2049	0.84	-0.4
2,087,468	-		GFF2049	0.84	-0.5
2,087,468	-		GFF2049	0.84	-2.5
2,087,520	+				+0.8
2,087,528	-				-0.4
2,087,529	+				-1.4
2,087,541	-				+0.5
2,087,541	-				-0.8
2,087,547	-				-1.0
2,087,563	+				-0.7
2,087,621	-				-0.7
2,087,637	+				-0.4
2,087,637	+				-1.9
2,087,642	+				+0.9
2,087,642	+				-2.5
2,087,645	-				+0.8
2,087,645	-				+0.3
2,087,650	-				-0.1
2,087,663	+				-0.9
2,087,679	-				+0.6
2,087,680	+				-0.1
2,087,684	+				-0.3
2,087,690	+				-0.2
2,087,700	+				+0.7
2,087,708	-				-2.5
2,087,708	-				+0.3
2,087,713	-				-1.2
2,087,714	+				+0.1
2,087,720	+				-0.9
2,087,778	-		GFF2050	0.11	-2.1
2,087,787	+		GFF2050	0.12	-1.2
2,087,797	-		GFF2050	0.13	+0.0
2,087,845	+		GFF2050	0.16	+1.0
2,087,850	+		GFF2050	0.16	+0.3
2,087,850	+		GFF2050	0.16	+0.7
2,087,855	+		GFF2050	0.16	+0.9
2,087,863	+		GFF2050	0.17	+1.6
2,087,878	-		GFF2050	0.18	-0.7
2,087,878	-		GFF2050	0.18	-0.8
2,087,883	-		GFF2050	0.18	+0.3
2,087,896	-		GFF2050	0.19	+0.3
2,087,953	+		GFF2050	0.23	-0.6
2,087,969	+		GFF2050	0.24	+0.9
2,087,979	+		GFF2050	0.25	+1.6
2,087,989	+		GFF2050	0.25	+0.9
2,087,989	+		GFF2050	0.25	+0.0
2,087,997	-		GFF2050	0.26	+0.2
2,087,997	-		GFF2050	0.26	-0.7
2,087,997	-		GFF2050	0.26	-1.5
2,088,017	+		GFF2050	0.27	-1.5
2,088,025	+		GFF2050	0.28	+0.3
2,088,049	+		GFF2050	0.29	-0.8
2,088,057	-		GFF2050	0.30	-0.3
2,088,057	-		GFF2050	0.30	-0.6
2,088,057	-		GFF2050	0.30	-0.2
2,088,094	+		GFF2050	0.32	+0.6
2,088,096	-		GFF2050	0.33	+0.8
2,088,096	-		GFF2050	0.33	-1.0
2,088,108	+		GFF2050	0.33	-0.1
2,088,117	+		GFF2050	0.34	-1.2
2,088,125	-		GFF2050	0.35	-0.4
2,088,132	-		GFF2050	0.35	+0.3
2,088,169	+		GFF2050	0.37	+0.6
2,088,174	+		GFF2050	0.38	-0.0
2,088,179	+		GFF2050	0.38	-0.3
2,088,187	-		GFF2050	0.39	+0.8
2,088,190	+		GFF2050	0.39	+0.8
2,088,198	-		GFF2050	0.39	-0.3
2,088,265	+		GFF2050	0.44	-1.7
2,088,265	+		GFF2050	0.44	-0.3
2,088,265	+		GFF2050	0.44	-1.3
2,088,265	+		GFF2050	0.44	-1.2
2,088,265	+		GFF2050	0.44	-1.2
2,088,265	+		GFF2050	0.44	+0.1
2,088,273	-		GFF2050	0.44	+1.4
2,088,273	-		GFF2050	0.44	+0.7
2,088,273	-		GFF2050	0.44	+0.3
2,088,273	-		GFF2050	0.44	-1.6
2,088,273	-		GFF2050	0.44	-0.4
2,088,273	-		GFF2050	0.44	+1.2
2,088,275	-		GFF2050	0.45	+0.4
2,088,291	-		GFF2050	0.46	-0.4
2,088,297	+		GFF2050	0.46	+0.9
2,088,297	+		GFF2050	0.46	-1.2
2,088,336	+		GFF2050	0.49	+0.3
2,088,344	-		GFF2050	0.49	+1.6
2,088,372	-		GFF2050	0.51	+0.1
2,088,387	-		GFF2050	0.52	-0.4
2,088,396	+		GFF2050	0.53	-0.8
2,088,396	+		GFF2050	0.53	-0.0
2,088,396	+		GFF2050	0.53	-0.3
2,088,396	+		GFF2050	0.53	+0.8
2,088,396	+		GFF2050	0.53	-0.2
2,088,396	+		GFF2050	0.53	-1.4
2,088,396	+		GFF2050	0.53	+0.3
2,088,396	+		GFF2050	0.53	+0.6
2,088,404	-		GFF2050	0.53	-0.1
2,088,404	-		GFF2050	0.53	-0.3
2,088,404	-		GFF2050	0.53	-0.2
2,088,404	-		GFF2050	0.53	-0.5
2,088,404	-		GFF2050	0.53	-0.3
2,088,404	-		GFF2050	0.53	+0.6
2,088,404	-		GFF2050	0.53	-0.2
2,088,404	-		GFF2050	0.53	-1.4
2,088,404	-		GFF2050	0.53	-0.6
2,088,404	-		GFF2050	0.53	-0.5
2,088,404	-		GFF2050	0.53	-1.8
2,088,404	-		GFF2050	0.53	-0.1
2,088,413	-		GFF2050	0.54	+0.0
2,088,413	-		GFF2050	0.54	-0.1
2,088,414	-		GFF2050	0.54	-0.8
2,088,414	-		GFF2050	0.54	+0.9
2,088,444	+		GFF2050	0.56	+0.1
2,088,454	+		GFF2050	0.57	+1.1
2,088,462	-		GFF2050	0.57	-2.0
2,088,508	+		GFF2050	0.60	+0.3
2,088,516	-		GFF2050	0.61	-0.3
2,088,518	+		GFF2050	0.61	-1.7
2,088,559	+		GFF2050	0.64	+0.6
2,088,559	+		GFF2050	0.64	-0.2
2,088,567	-		GFF2050	0.64	-1.4
2,088,583	+		GFF2050	0.65	+0.5
2,088,583	+		GFF2050	0.65	+0.1
2,088,583	+		GFF2050	0.65	-0.6
2,088,583	+		GFF2050	0.65	-1.2
2,088,585	+		GFF2050	0.65	-1.2
2,088,591	-		GFF2050	0.66	-0.2
2,088,591	-		GFF2050	0.66	+0.2
2,088,591	-		GFF2050	0.66	-1.9
2,088,591	-		GFF2050	0.66	+0.3
2,088,591	-		GFF2050	0.66	-1.0
2,088,597	+		GFF2050	0.66	-2.8
2,088,598	+		GFF2050	0.66	+0.3
2,088,602	+		GFF2050	0.66	-0.5
2,088,606	-		GFF2050	0.67	-0.2
2,088,610	-		GFF2050	0.67	-0.1
2,088,624	+		GFF2050	0.68	+0.7
2,088,627	-		GFF2050	0.68	+0.4
2,088,642	-		GFF2050	0.69	-0.4
2,088,656	+		GFF2050	0.70	-0.6
2,088,670	-		GFF2050	0.71	+0.4
2,088,700	+		GFF2050	0.73	-0.3
2,088,713	-		GFF2050	0.74	-1.0
2,088,723	+		GFF2050	0.75	+0.3
2,088,731	-		GFF2050	0.75	+1.3
2,088,731	-		GFF2050	0.75	-0.4
2,088,732	-		GFF2050	0.75	-0.5
2,088,737	+		GFF2050	0.76	-0.1
2,088,765	+		GFF2050	0.77	+0.1
2,088,765	+		GFF2050	0.77	-1.3
2,088,773	-		GFF2050	0.78	-0.5
2,088,773	-		GFF2050	0.78	-0.7
2,088,773	-		GFF2050	0.78	-0.5
2,088,775	+		GFF2050	0.78	-0.4
2,088,775	+		GFF2050	0.78	-0.4
2,088,780	+		GFF2050	0.78	+1.1
2,088,788	-		GFF2050	0.79	-0.7
2,088,788	-		GFF2050	0.79	-0.2
2,088,788	-		GFF2050	0.79	+0.5
2,088,791	+		GFF2050	0.79	+0.6
2,088,798	+		GFF2050	0.80	+0.5
2,088,799	-		GFF2050	0.80	-1.2
2,088,806	-		GFF2050	0.80	-1.3
2,088,806	-		GFF2050	0.80	+0.6
2,088,826	+		GFF2050	0.81	+0.1
2,088,848	+		GFF2050	0.83	-1.0
2,088,853	+		GFF2050	0.83	-1.8
2,088,854	-		GFF2050	0.83	-0.5
2,088,876	-		GFF2050	0.85	-0.3
2,088,883	+		GFF2050	0.85	-0.5
2,088,883	+		GFF2050	0.85	-1.2
2,088,883	+		GFF2050	0.85	-1.7
2,088,883	+		GFF2050	0.85	+0.3
2,088,886	-		GFF2050	0.85	-1.9
2,088,891	-		GFF2050	0.86	-1.3
2,088,891	-		GFF2050	0.86	+0.6
2,088,896	-		GFF2050	0.86	-0.2
2,088,910	-		GFF2050	0.87	+0.3
2,088,932	+		GFF2050	0.89	-0.7
2,088,941	-		GFF2050	0.89	-0.2
2,088,950	+		GFF2050	0.90	+0.5
2,088,958	-				-0.2
2,088,966	-				-1.2
2,088,981	+				+0.2
2,088,991	+				+0.4
2,088,999	-				+1.0
2,089,034	-				+0.7
2,089,046	+				-0.2
2,089,068	+				-1.3
2,089,120	+				-1.1
2,089,122	-				-0.0
2,089,124	+				-0.1
2,089,126	+				+0.3
2,089,134	-				-0.7
2,089,174	+				+0.6
2,089,182	+				-0.2
2,089,182	+				+0.1
2,089,190	-				-1.2
2,089,231	+		GFF2051	0.23	-1.8
2,089,232	+		GFF2051	0.24	+0.8
2,089,233	-		GFF2051	0.24	-0.1
2,089,239	-		GFF2051	0.26	-0.9
2,089,239	-		GFF2051	0.26	-0.1
2,089,239	-		GFF2051	0.26	-0.5
2,089,240	-		GFF2051	0.27	-2.6
2,089,249	-		GFF2051	0.30	+1.3
2,089,249	-		GFF2051	0.30	-1.1
2,089,249	-		GFF2051	0.30	-1.4
2,089,270	+		GFF2051	0.38	+0.7
2,089,270	-		GFF2051	0.38	-0.8
2,089,289	+		GFF2051	0.46	+0.4
2,089,351	-		GFF2051	0.70	+0.6
2,089,356	-		GFF2051	0.72	+0.0
2,089,392	+		GFF2051	0.86	-0.6
2,089,407	+				-0.0
2,089,415	-				-0.8
2,089,432	+				+1.0
2,089,438	-				-0.4
2,089,438	-				+0.0
2,089,440	-				-1.4
2,089,440	-				+0.1
2,089,445	+				-0.2
2,089,445	+				+0.3
2,089,473	-				-1.1
2,089,477	+				+0.8
2,089,477	+				+0.8
2,089,504	+				-0.5
2,089,512	-				-0.2
2,089,524	+				-0.6
2,089,524	+				-0.5
2,089,524	+				-0.2
2,089,532	-				-0.2
2,089,532	-				-0.9
2,089,532	-				-0.7
2,089,535	+				+0.1
2,089,571	+				+0.6
2,089,579	+				-2.6
2,089,581	+				-0.9
2,089,587	-				-0.4
2,089,587	-				+1.3
2,089,614	+				-1.6
2,089,622	-				-1.5
2,089,622	-				-1.8
2,089,626	+				-1.4
2,089,634	-				-3.1
2,089,634	-				-1.3
2,089,639	-				-1.3
2,089,639	-				-1.3
2,089,682	+		GFF2052	0.11	-1.5
2,089,683	+		GFF2052	0.11	-2.1
2,089,690	-		GFF2052	0.11	-2.5
2,089,691	-		GFF2052	0.12	-1.3
2,089,704	+		GFF2052	0.13	-2.6
2,089,714	+		GFF2052	0.14	-0.2
2,089,722	-		GFF2052	0.15	-1.8
2,089,810	-		GFF2052	0.25	-1.7
2,089,817	+		GFF2052	0.26	-2.8
2,089,820	-		GFF2052	0.26	-1.3
2,089,835	-		GFF2052	0.28	-1.3
2,089,835	-		GFF2052	0.28	+0.1
2,089,835	-		GFF2052	0.28	-2.1
2,089,851	+		GFF2052	0.30	-1.5
2,089,859	-		GFF2052	0.31	-2.7
2,089,947	-		GFF2052	0.41	-2.4
2,089,972	-		GFF2052	0.44	-0.3
2,090,034	+		GFF2052	0.51	-1.7
2,090,042	-		GFF2052	0.52	-2.6
2,090,042	-		GFF2052	0.52	-1.2
2,090,067	+		GFF2052	0.54	-2.3
2,090,067	+		GFF2052	0.54	-2.2
2,090,067	+		GFF2052	0.54	-1.2
2,090,075	-		GFF2052	0.55	-1.5
2,090,075	-		GFF2052	0.55	-1.4
2,090,075	-		GFF2052	0.55	-1.7
2,090,075	-		GFF2052	0.55	-1.4
2,090,075	-		GFF2052	0.55	-2.6
2,090,075	-		GFF2052	0.55	-2.0
2,090,087	+		GFF2052	0.57	-1.2
2,090,087	+		GFF2052	0.57	-2.1
2,090,087	+		GFF2052	0.57	-1.9