Strain Fitness in Sphingobium sp. HT1-2 around GFF2042

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,076,384	-		GFF2041	0.64	+1.0
2,076,384	-		GFF2041	0.64	+1.1
2,076,417	+		GFF2041	0.65	-0.3
2,076,432	+		GFF2041	0.66	-0.8
2,076,445	+		GFF2041	0.66	-2.0
2,076,445	+		GFF2041	0.66	-0.4
2,076,445	+		GFF2041	0.66	-1.1
2,076,445	+		GFF2041	0.66	-0.7
2,076,445	+		GFF2041	0.66	+0.7
2,076,445	+		GFF2041	0.66	+0.3
2,076,453	-		GFF2041	0.66	-0.1
2,076,461	+		GFF2041	0.67	+0.4
2,076,461	+		GFF2041	0.67	-2.0
2,076,469	-		GFF2041	0.67	+0.0
2,076,469	-		GFF2041	0.67	+0.1
2,076,511	-		GFF2041	0.69	+0.9
2,076,516	+		GFF2041	0.69	-0.5
2,076,526	+		GFF2041	0.69	+0.7
2,076,526	+		GFF2041	0.69	+0.0
2,076,526	+		GFF2041	0.69	+0.2
2,076,532	-		GFF2041	0.70	-0.4
2,076,534	-		GFF2041	0.70	-2.3
2,076,546	+		GFF2041	0.70	-0.8
2,076,546	+		GFF2041	0.70	+0.7
2,076,546	+		GFF2041	0.70	-0.7
2,076,546	+		GFF2041	0.70	+0.1
2,076,552	+		GFF2041	0.70	+0.2
2,076,554	+		GFF2041	0.71	-0.7
2,076,554	-		GFF2041	0.71	-0.2
2,076,554	-		GFF2041	0.71	+0.4
2,076,554	-		GFF2041	0.71	+1.0
2,076,554	-		GFF2041	0.71	-2.1
2,076,554	-		GFF2041	0.71	-0.3
2,076,632	+		GFF2041	0.74	-0.3
2,076,645	+		GFF2041	0.74	-0.3
2,076,645	-		GFF2041	0.74	+1.1
2,076,645	-		GFF2041	0.74	-0.1
2,076,658	-		GFF2041	0.75	-0.1
2,076,658	-		GFF2041	0.75	+0.0
2,076,658	-		GFF2041	0.75	-1.1
2,076,661	+		GFF2041	0.75	+1.6
2,076,661	+		GFF2041	0.75	+0.4
2,076,669	-		GFF2041	0.75	-1.1
2,076,676	-		GFF2041	0.76	-0.4
2,076,697	-		GFF2041	0.76	+1.1
2,076,709	+		GFF2041	0.77	-1.1
2,076,709	+		GFF2041	0.77	-2.3
2,076,709	+		GFF2041	0.77	-0.1
2,076,709	+		GFF2041	0.77	+1.3
2,076,709	+		GFF2041	0.77	+0.5
2,076,722	-		GFF2041	0.77	-0.1
2,076,736	+		GFF2041	0.78	-1.2
2,076,743	+		GFF2041	0.78	-0.4
2,076,761	+		GFF2041	0.79	-0.8
2,076,769	-		GFF2041	0.79	-0.1
2,076,793	+		GFF2041	0.80	-0.5
2,076,793	+		GFF2041	0.80	+0.8
2,076,793	+		GFF2041	0.80	-0.1
2,076,793	+		GFF2041	0.80	-1.5
2,076,793	+		GFF2041	0.80	-1.2
2,076,801	-		GFF2041	0.81	-0.7
2,076,801	-		GFF2041	0.81	-0.6
2,076,801	-		GFF2041	0.81	+0.7
2,076,803	+		GFF2041	0.81	+1.3
2,076,806	-		GFF2041	0.81	-1.2
2,076,806	-		GFF2041	0.81	+0.3
2,076,818	-		GFF2041	0.81	-1.4
2,076,818	-		GFF2041	0.81	+0.4
2,076,880	+		GFF2041	0.84	+0.4
2,076,882	-		GFF2041	0.84	+0.1
2,076,927	+		GFF2041	0.86	-0.8
2,076,927	+		GFF2041	0.86	-0.1
2,076,927	+		GFF2041	0.86	+0.2
2,076,927	+		GFF2041	0.86	-0.8
2,076,927	+		GFF2041	0.86	+0.5
2,076,935	-		GFF2041	0.86	-0.1
2,076,935	-		GFF2041	0.86	-1.1
2,076,935	-		GFF2041	0.86	-1.0
2,076,937	+		GFF2041	0.86	-2.9
2,076,937	+		GFF2041	0.86	-1.4
2,076,940	-		GFF2041	0.86	-1.5
2,076,994	-		GFF2041	0.89	-1.2
2,076,994	-		GFF2041	0.89	+0.2
2,076,999	+		GFF2041	0.89	-0.1
2,077,049	-				-1.1
2,077,049	-				-0.7
2,077,064	+				-0.1
2,077,064	+				+0.2
2,077,067	-				-1.1
2,077,071	+				+0.6
2,077,079	-				+0.2
2,077,079	-				-1.6
2,077,119	+				+0.5
2,077,130	+				+0.2
2,077,205	-				-0.8
2,077,216	+				-0.8
2,077,224	-				-0.8
2,077,224	-				+0.6
2,077,224	-				+0.4
2,077,226	-				+0.2
2,077,226	-				-0.4
2,077,226	-				-0.1
2,077,226	-				-1.1
2,077,234	+				+1.4
2,077,234	+				+0.5
2,077,234	+				-0.0
2,077,234	+				+0.0
2,077,234	+				-0.9
2,077,236	+				-1.5
2,077,242	-				-0.2
2,077,242	-				-1.4
2,077,242	-				+0.9
2,077,242	-				+0.2
2,077,242	-				-1.7
2,077,261	-				+1.7
2,077,312	+				-1.0
2,077,334	+				+0.4
2,077,360	+				+0.6
2,077,360	+				-0.3
2,077,368	-				+0.5
2,077,398	-				+0.0
2,077,400	+				-0.7
2,077,405	+				-0.5
2,077,434	-				-1.3
2,077,520	+				-0.3
2,077,542	+				-0.2
2,077,547	+				-0.3
2,077,550	-				-1.3
2,077,550	-				-0.5
2,077,550	-				+0.3
2,077,555	-				-0.1
2,077,555	-				-2.6
2,077,555	-				-1.7
2,077,560	-				+0.7
2,077,624	-				+0.3
2,077,634	-				+1.9
2,077,648	+				+0.2
2,077,648	+				+0.6
2,077,654	+				-0.8
2,077,656	-				-0.3
2,077,689	-				-0.2
2,077,705	+		GFF2042	0.10	+0.3
2,077,713	-		GFF2042	0.10	-1.6
2,077,713	-		GFF2042	0.10	+0.9
2,077,802	+		GFF2042	0.13	-0.7
2,077,810	-		GFF2042	0.13	+0.5
2,077,818	-		GFF2042	0.14	+0.7
2,077,847	+		GFF2042	0.15	+0.3
2,077,847	+		GFF2042	0.15	-1.1
2,077,847	+		GFF2042	0.15	-0.6
2,077,847	+		GFF2042	0.15	-0.4
2,077,855	-		GFF2042	0.15	+0.6
2,077,855	-		GFF2042	0.15	-1.7
2,077,855	-		GFF2042	0.15	-0.2
2,077,855	-		GFF2042	0.15	+0.9
2,077,859	+		GFF2042	0.15	+0.2
2,077,895	+		GFF2042	0.16	+0.0
2,077,933	+		GFF2042	0.17	+0.3
2,077,943	-		GFF2042	0.18	-0.1
2,077,943	-		GFF2042	0.18	-0.9
2,077,983	+		GFF2042	0.19	+0.3
2,078,000	-		GFF2042	0.19	+0.8
2,078,008	+		GFF2042	0.20	-0.1
2,078,008	-		GFF2042	0.20	+0.9
2,078,011	-		GFF2042	0.20	-0.7
2,078,013	-		GFF2042	0.20	-0.7
2,078,016	+		GFF2042	0.20	-2.4
2,078,024	+		GFF2042	0.20	-0.5
2,078,043	-		GFF2042	0.21	-1.5
2,078,056	-		GFF2042	0.21	-0.7
2,078,066	+		GFF2042	0.21	-1.2
2,078,068	+		GFF2042	0.22	-0.5
2,078,076	-		GFF2042	0.22	+0.4
2,078,078	+		GFF2042	0.22	-0.2
2,078,094	-		GFF2042	0.22	+1.5
2,078,096	-		GFF2042	0.22	-1.8
2,078,102	+		GFF2042	0.23	-2.1
2,078,114	-		GFF2042	0.23	+0.2
2,078,134	+		GFF2042	0.24	-0.4
2,078,145	+		GFF2042	0.24	-0.1
2,078,153	-		GFF2042	0.24	-1.1
2,078,159	-		GFF2042	0.24	-0.1
2,078,186	+		GFF2042	0.25	+0.3
2,078,193	+		GFF2042	0.25	-2.2
2,078,263	-		GFF2042	0.28	-1.0
2,078,263	-		GFF2042	0.28	+0.9
2,078,263	-		GFF2042	0.28	+0.0
2,078,295	-		GFF2042	0.29	+0.3
2,078,312	+		GFF2042	0.29	-1.4
2,078,312	+		GFF2042	0.29	-1.3
2,078,312	+		GFF2042	0.29	-0.1
2,078,320	-		GFF2042	0.29	+0.4
2,078,320	-		GFF2042	0.29	-0.5
2,078,322	+		GFF2042	0.29	+1.4
2,078,333	+		GFF2042	0.30	+0.8
2,078,335	-		GFF2042	0.30	-0.3
2,078,341	-		GFF2042	0.30	-0.7
2,078,349	+		GFF2042	0.30	+0.6
2,078,353	+		GFF2042	0.30	+1.0
2,078,354	+		GFF2042	0.30	+1.2
2,078,354	+		GFF2042	0.30	+0.4
2,078,357	-		GFF2042	0.31	+0.9
2,078,357	-		GFF2042	0.31	-0.1
2,078,362	-		GFF2042	0.31	+0.9
2,078,362	-		GFF2042	0.31	-0.7
2,078,367	+		GFF2042	0.31	-1.7
2,078,367	-		GFF2042	0.31	-0.3
2,078,384	+		GFF2042	0.31	+0.0
2,078,384	+		GFF2042	0.31	+0.4
2,078,384	+		GFF2042	0.31	-0.3
2,078,384	+		GFF2042	0.31	-0.8
2,078,387	-		GFF2042	0.31	-1.1
2,078,389	+		GFF2042	0.31	-0.9
2,078,392	-		GFF2042	0.32	+0.4
2,078,392	-		GFF2042	0.32	+1.0
2,078,392	-		GFF2042	0.32	-0.2
2,078,411	+		GFF2042	0.32	-0.3
2,078,416	+		GFF2042	0.32	+0.2
2,078,466	+		GFF2042	0.34	-1.7
2,078,517	+		GFF2042	0.35	+0.9
2,078,558	-		GFF2042	0.37	+0.4
2,078,558	-		GFF2042	0.37	-0.5
2,078,563	-		GFF2042	0.37	-0.2
2,078,614	+		GFF2042	0.38	+0.1
2,078,622	-		GFF2042	0.39	-0.6
2,078,627	-		GFF2042	0.39	+1.3
2,078,636	-		GFF2042	0.39	-0.2
2,078,649	-		GFF2042	0.40	+0.3
2,078,659	+		GFF2042	0.40	+0.5
2,078,660	-		GFF2042	0.40	-1.1
2,078,693	-		GFF2042	0.41	+0.4
2,078,751	-		GFF2042	0.43	-1.0
2,078,762	-		GFF2042	0.43	-0.8
2,078,762	-		GFF2042	0.43	+0.2
2,078,762	-		GFF2042	0.43	-0.5
2,078,770	+		GFF2042	0.43	+1.5
2,078,808	-		GFF2042	0.45	+0.9
2,078,810	+		GFF2042	0.45	-0.7
2,078,811	+		GFF2042	0.45	+0.7
2,078,830	+		GFF2042	0.45	+0.2
2,078,833	-		GFF2042	0.45	-1.1
2,078,843	+		GFF2042	0.46	-1.1
2,078,843	+		GFF2042	0.46	-0.3
2,078,846	-		GFF2042	0.46	-0.6
2,078,848	+		GFF2042	0.46	-1.3
2,078,848	+		GFF2042	0.46	+0.6
2,078,850	+		GFF2042	0.46	+1.4
2,078,851	-		GFF2042	0.46	+0.4
2,078,851	-		GFF2042	0.46	-3.3
2,078,866	-		GFF2042	0.46	-0.7
2,078,873	-		GFF2042	0.47	-1.2
2,078,899	+		GFF2042	0.47	+0.2
2,078,900	+		GFF2042	0.47	+1.6
2,078,907	-		GFF2042	0.48	+0.4
2,078,907	-		GFF2042	0.48	-0.3
2,078,908	-		GFF2042	0.48	-1.4
2,078,908	-		GFF2042	0.48	-0.3
2,078,932	+		GFF2042	0.48	-0.5
2,078,963	-		GFF2042	0.49	-0.6
2,078,966	-		GFF2042	0.49	-1.9
2,078,975	+		GFF2042	0.50	-0.2
2,079,001	-		GFF2042	0.51	-0.8
2,079,003	+		GFF2042	0.51	+0.6
2,079,003	+		GFF2042	0.51	-0.2
2,079,011	-		GFF2042	0.51	-0.4
2,079,011	-		GFF2042	0.51	+1.1
2,079,016	-		GFF2042	0.51	-0.5
2,079,034	-		GFF2042	0.52	-0.2
2,079,040	-		GFF2042	0.52	-0.6
2,079,042	+		GFF2042	0.52	-1.6
2,079,042	+		GFF2042	0.52	+0.9
2,079,047	+		GFF2042	0.52	-1.1
2,079,047	+		GFF2042	0.52	+1.1
2,079,047	+		GFF2042	0.52	+0.9
2,079,047	+		GFF2042	0.52	+0.5
2,079,048	+		GFF2042	0.52	-2.0
2,079,048	+		GFF2042	0.52	-0.3
2,079,048	+		GFF2042	0.52	-1.3
2,079,048	+		GFF2042	0.52	-1.1
2,079,048	+		GFF2042	0.52	-0.3
2,079,048	+		GFF2042	0.52	-0.1
2,079,050	-		GFF2042	0.52	+0.6
2,079,050	-		GFF2042	0.52	+0.6
2,079,055	-		GFF2042	0.52	-0.8
2,079,055	-		GFF2042	0.52	-0.3
2,079,055	-		GFF2042	0.52	-0.1
2,079,055	-		GFF2042	0.52	-1.4
2,079,055	-		GFF2042	0.52	-0.3
2,079,056	-		GFF2042	0.52	-1.6
2,079,056	-		GFF2042	0.52	-0.1
2,079,056	-		GFF2042	0.52	-1.3
2,079,056	-		GFF2042	0.52	-1.6
2,079,056	-		GFF2042	0.52	-0.7
2,079,056	-		GFF2042	0.52	-0.6
2,079,056	-		GFF2042	0.52	-0.2
2,079,056	-		GFF2042	0.52	-0.9
2,079,056	-		GFF2042	0.52	+0.0
2,079,058	+		GFF2042	0.52	+0.9
2,079,058	+		GFF2042	0.52	-1.1
2,079,066	-		GFF2042	0.53	-2.6
2,079,129	+		GFF2042	0.55	+0.3
2,079,129	-		GFF2042	0.55	-0.5
2,079,137	-		GFF2042	0.55	-0.4
2,079,157	-		GFF2042	0.55	+0.9
2,079,159	-		GFF2042	0.55	-1.5
2,079,184	-		GFF2042	0.56	+0.6
2,079,202	+		GFF2042	0.57	+0.3
2,079,202	+		GFF2042	0.57	+0.4
2,079,251	-		GFF2042	0.58	+0.8
2,079,251	-		GFF2042	0.58	-1.4
2,079,252	-		GFF2042	0.58	-0.5
2,079,254	+		GFF2042	0.58	-0.9
2,079,257	-		GFF2042	0.58	+0.3
2,079,257	-		GFF2042	0.58	+0.3
2,079,262	-		GFF2042	0.59	-0.8
2,079,271	+		GFF2042	0.59	-0.1
2,079,286	+		GFF2042	0.59	-0.5
2,079,286	+		GFF2042	0.59	+0.0
2,079,286	+		GFF2042	0.59	-0.7
2,079,286	+		GFF2042	0.59	+0.9
2,079,286	+		GFF2042	0.59	-0.5
2,079,286	+		GFF2042	0.59	-1.3
2,079,286	+		GFF2042	0.59	-1.8
2,079,292	-		GFF2042	0.60	+0.9
2,079,294	-		GFF2042	0.60	-0.7
2,079,294	-		GFF2042	0.60	+0.1
2,079,295	+		GFF2042	0.60	-2.5
2,079,296	+		GFF2042	0.60	+0.8
2,079,296	-		GFF2042	0.60	-1.1
2,079,333	+		GFF2042	0.61	-0.5
2,079,340	+		GFF2042	0.61	-1.3
2,079,341	-		GFF2042	0.61	+0.0
2,079,341	-		GFF2042	0.61	-0.1
2,079,341	-		GFF2042	0.61	-0.2
2,079,341	-		GFF2042	0.61	-0.3
2,079,348	-		GFF2042	0.61	-0.3
2,079,350	+		GFF2042	0.61	-1.3
2,079,384	+		GFF2042	0.62	+1.3
2,079,386	+		GFF2042	0.62	-0.1
2,079,391	+		GFF2042	0.63	-0.6
2,079,394	-		GFF2042	0.63	-1.0
2,079,399	+		GFF2042	0.63	-1.9
2,079,404	+		GFF2042	0.63	-2.2
2,079,409	+		GFF2042	0.63	-1.5
2,079,409	+		GFF2042	0.63	+0.7
2,079,409	+		GFF2042	0.63	-0.1
2,079,417	-		GFF2042	0.63	+0.0
2,079,430	-		GFF2042	0.64	-0.7
2,079,437	+		GFF2042	0.64	-0.1
2,079,440	+		GFF2042	0.64	-3.3
2,079,448	-		GFF2042	0.64	-0.6
2,079,448	-		GFF2042	0.64	+1.6
2,079,453	-		GFF2042	0.65	-0.3
2,079,453	-		GFF2042	0.65	+0.3
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