Strain Fitness in Sphingobium sp. HT1-2 around GFF2040

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,072,923	+		GFF2038	0.78	-0.1
2,072,931	-		GFF2038	0.79	-1.0
2,072,936	-		GFF2038	0.79	+0.2
2,072,941	-		GFF2038	0.79	+0.5
2,072,941	-		GFF2038	0.79	+0.6
2,072,963	+		GFF2038	0.81	-1.8
2,072,963	+		GFF2038	0.81	-0.6
2,072,971	-		GFF2038	0.82	+0.5
2,072,971	-		GFF2038	0.82	+0.1
2,072,971	-		GFF2038	0.82	+0.2
2,072,981	+		GFF2038	0.83	+1.2
2,072,981	+		GFF2038	0.83	+0.1
2,072,981	+		GFF2038	0.83	+0.1
2,072,981	+		GFF2038	0.83	-1.1
2,073,007	+		GFF2038	0.85	+0.8
2,073,012	+		GFF2038	0.85	-0.8
2,073,012	+		GFF2038	0.85	-1.9
2,073,012	+		GFF2038	0.85	-0.6
2,073,020	-		GFF2038	0.86	-0.9
2,073,020	-		GFF2038	0.86	+0.4
2,073,020	-		GFF2038	0.86	+0.6
2,073,020	-		GFF2038	0.86	+1.0
2,073,059	-		GFF2038	0.89	+0.0
2,073,085	+				-0.7
2,073,087	+				-0.7
2,073,094	+				-0.5
2,073,094	+				+0.0
2,073,095	-				+0.0
2,073,100	+				-0.8
2,073,100	+				-1.6
2,073,102	-				+0.6
2,073,102	-				+0.2
2,073,115	-				-0.2
2,073,129	+				+0.8
2,073,134	+				+0.8
2,073,134	+				+0.9
2,073,134	+				-0.9
2,073,136	+				-2.4
2,073,136	+				-2.1
2,073,137	-				-2.3
2,073,138	-				-1.0
2,073,142	-				-0.3
2,073,142	-				-0.3
2,073,142	-				+0.3
2,073,167	+				-0.3
2,073,182	+				+0.4
2,073,189	+				+0.4
2,073,190	+				+1.0
2,073,205	+				+1.4
2,073,212	-				+0.6
2,073,212	-				-0.2
2,073,213	-				+1.1
2,073,214	+				-0.2
2,073,215	+				-1.3
2,073,222	-				-0.5
2,073,223	-				-0.1
2,073,223	-				-1.0
2,073,223	-				-0.3
2,073,223	-				-1.4
2,073,223	-				+0.7
2,073,244	-				+0.7
2,073,259	-				+1.0
2,073,290	+				-1.2
2,073,290	+				-0.1
2,073,294	+				-0.1
2,073,296	-				-1.9
2,073,296	-				-1.4
2,073,296	-				-1.5
2,073,298	-				+0.5
2,073,298	-				+1.4
2,073,301	+				-0.2
2,073,302	-				-0.4
2,073,302	-				+0.3
2,073,302	-				-0.7
2,073,310	-				+0.4
2,073,313	+				-0.7
2,073,323	+				+0.3
2,073,338	+				+1.0
2,073,338	+				-0.2
2,073,340	+				+0.4
2,073,340	+				-0.5
2,073,340	+				-0.5
2,073,345	+				-1.1
2,073,346	-				+0.9
2,073,346	-				+1.5
2,073,348	-				-0.2
2,073,348	-				+0.0
2,073,348	-				-1.3
2,073,348	-				-0.4
2,073,348	-				-0.0
2,073,348	-				+1.9
2,073,353	-				-0.8
2,073,358	-				+0.7
2,073,359	-				-0.4
2,073,360	-				+0.1
2,073,390	+		GFF2039	0.15	-0.8
2,073,390	+		GFF2039	0.15	-1.2
2,073,390	+		GFF2039	0.15	-1.4
2,073,395	+		GFF2039	0.16	-1.1
2,073,398	-		GFF2039	0.17	+0.9
2,073,398	-		GFF2039	0.17	-1.3
2,073,398	-		GFF2039	0.17	-2.3
2,073,407	-		GFF2039	0.18	+0.9
2,073,418	+		GFF2039	0.20	+1.6
2,073,418	+		GFF2039	0.20	+0.6
2,073,418	+		GFF2039	0.20	-2.5
2,073,418	+		GFF2039	0.20	-2.1
2,073,418	+		GFF2039	0.20	-1.6
2,073,418	+		GFF2039	0.20	-0.5
2,073,418	+		GFF2039	0.20	-1.4
2,073,418	+		GFF2039	0.20	-0.4
2,073,418	+		GFF2039	0.20	+0.7
2,073,426	-		GFF2039	0.22	+0.3
2,073,426	-		GFF2039	0.22	-0.8
2,073,426	-		GFF2039	0.22	-1.4
2,073,426	-		GFF2039	0.22	+0.9
2,073,426	-		GFF2039	0.22	+0.3
2,073,426	-		GFF2039	0.22	-2.1
2,073,426	-		GFF2039	0.22	-0.1
2,073,450	-		GFF2039	0.26	+0.3
2,073,451	-		GFF2039	0.26	+0.4
2,073,476	+		GFF2039	0.31	+0.6
2,073,477	+		GFF2039	0.31	-1.6
2,073,486	-		GFF2039	0.32	-0.3
2,073,486	-		GFF2039	0.32	-1.3
2,073,501	-		GFF2039	0.35	-0.5
2,073,501	-		GFF2039	0.35	-0.1
2,073,503	+		GFF2039	0.35	+0.3
2,073,503	+		GFF2039	0.35	+1.0
2,073,506	-		GFF2039	0.36	-0.7
2,073,506	-		GFF2039	0.36	+0.4
2,073,511	-		GFF2039	0.37	+0.4
2,073,511	-		GFF2039	0.37	+1.3
2,073,511	-		GFF2039	0.37	-0.5
2,073,535	+		GFF2039	0.41	-0.1
2,073,553	+		GFF2039	0.45	-1.0
2,073,561	-		GFF2039	0.46	+1.2
2,073,581	+		GFF2039	0.50	+0.6
2,073,581	+		GFF2039	0.50	-0.6
2,073,581	+		GFF2039	0.50	+0.5
2,073,581	+		GFF2039	0.50	+0.3
2,073,581	+		GFF2039	0.50	-1.1
2,073,581	+		GFF2039	0.50	+0.8
2,073,581	+		GFF2039	0.50	+0.7
2,073,581	+		GFF2039	0.50	-1.7
2,073,589	-		GFF2039	0.51	-0.2
2,073,589	-		GFF2039	0.51	-0.4
2,073,589	-		GFF2039	0.51	+1.6
2,073,589	-		GFF2039	0.51	+0.3
2,073,589	-		GFF2039	0.51	-0.7
2,073,589	-		GFF2039	0.51	-0.7
2,073,589	-		GFF2039	0.51	-0.3
2,073,589	-		GFF2039	0.51	+0.7
2,073,589	-		GFF2039	0.51	-2.3
2,073,589	-		GFF2039	0.51	-2.2
2,073,589	-		GFF2039	0.51	-0.2
2,073,650	-		GFF2039	0.62	+1.5
2,073,694	+		GFF2039	0.70	+0.3
2,073,694	+		GFF2039	0.70	-0.3
2,073,702	-		GFF2039	0.71	-0.1
2,073,702	-		GFF2039	0.71	-0.2
2,073,702	-		GFF2039	0.71	-0.7
2,073,702	-		GFF2039	0.71	-2.2
2,073,741	-		GFF2039	0.78	-0.4
2,073,781	+		GFF2039	0.86	-0.1
2,073,783	-		GFF2039	0.86	+0.7
2,073,788	-		GFF2039	0.87	+0.6
2,073,789	-		GFF2039	0.87	+0.8
2,073,793	-		GFF2039	0.88	-2.6
2,073,804	-		GFF2039	0.90	+0.3
2,073,826	+				+0.1
2,073,846	-				-1.3
2,073,864	+				+1.3
2,073,872	-				-0.3
2,073,882	+				-0.4
2,073,895	+				-0.4
2,073,895	+				-0.4
2,073,903	-				+0.9
2,073,905	+				+0.6
2,073,905	+				-1.5
2,073,905	+				-0.1
2,073,906	+				+0.2
2,073,907	+				-2.3
2,073,907	+				-1.4
2,073,907	+				-0.3
2,073,913	-				-1.8
2,073,913	-				-0.8
2,073,913	-				-1.7
2,073,913	-				-0.1
2,073,913	-				-2.4
2,073,913	-				-0.5
2,073,915	-				-1.1
2,073,931	+				-0.2
2,073,944	-				-0.2
2,073,944	-				+0.8
2,073,946	-				+0.1
2,073,974	+				-0.7
2,073,990	-				-0.8
2,074,002	+				-1.3
2,074,006	+				-0.0
2,074,006	+				+0.8
2,074,010	-		GFF2040	0.10	-1.5
2,074,010	-		GFF2040	0.10	+1.3
2,074,025	+		GFF2040	0.12	-1.2
2,074,036	-		GFF2040	0.13	-0.4
2,074,046	-		GFF2040	0.14	+0.9
2,074,057	-		GFF2040	0.15	-1.4
2,074,059	+		GFF2040	0.15	-0.4
2,074,086	-		GFF2040	0.18	+0.1
2,074,145	-		GFF2040	0.25	-0.7
2,074,173	+		GFF2040	0.28	+0.1
2,074,175	+		GFF2040	0.28	+0.1
2,074,181	-		GFF2040	0.28	+0.7
2,074,181	-		GFF2040	0.28	+0.1
2,074,187	+		GFF2040	0.29	+1.3
2,074,191	+		GFF2040	0.30	-1.6
2,074,202	+		GFF2040	0.31	+0.2
2,074,210	-		GFF2040	0.32	-0.4
2,074,212	+		GFF2040	0.32	-0.8
2,074,230	-		GFF2040	0.34	+0.3
2,074,245	-		GFF2040	0.35	-2.3
2,074,263	+		GFF2040	0.37	+0.3
2,074,263	-		GFF2040	0.37	-1.6
2,074,268	-		GFF2040	0.38	+0.2
2,074,268	-		GFF2040	0.38	+0.6
2,074,274	+		GFF2040	0.38	-0.3
2,074,279	+		GFF2040	0.39	-0.4
2,074,284	+		GFF2040	0.40	-1.3
2,074,353	-		GFF2040	0.47	-1.1
2,074,355	+		GFF2040	0.47	-0.3
2,074,384	-		GFF2040	0.50	+0.1
2,074,396	+		GFF2040	0.52	+1.3
2,074,404	-		GFF2040	0.52	-0.1
2,074,432	+		GFF2040	0.55	-0.3
2,074,434	+		GFF2040	0.56	-1.5
2,074,440	-		GFF2040	0.56	-0.6
2,074,440	-		GFF2040	0.56	-0.3
2,074,440	-		GFF2040	0.56	-1.2
2,074,442	-		GFF2040	0.57	+0.5
2,074,444	+		GFF2040	0.57	+0.7
2,074,452	-		GFF2040	0.58	-0.1
2,074,484	-		GFF2040	0.61	+0.8
2,074,490	-		GFF2040	0.62	-0.3
2,074,490	-		GFF2040	0.62	+0.5
2,074,490	-		GFF2040	0.62	+1.1
2,074,490	-		GFF2040	0.62	-1.1
2,074,490	-		GFF2040	0.62	+0.9
2,074,497	-		GFF2040	0.62	-0.7
2,074,497	-		GFF2040	0.62	-0.5
2,074,497	-		GFF2040	0.62	+0.7
2,074,550	+		GFF2040	0.68	+0.4
2,074,550	+		GFF2040	0.68	-0.1
2,074,558	-		GFF2040	0.69	-1.3
2,074,563	-		GFF2040	0.70	-0.4
2,074,568	-		GFF2040	0.70	+0.3
2,074,575	+		GFF2040	0.71	+0.0
2,074,582	+		GFF2040	0.72	-0.5
2,074,608	+		GFF2040	0.74	-0.3
2,074,609	+		GFF2040	0.75	+0.8
2,074,620	-		GFF2040	0.76	-1.3
2,074,626	-		GFF2040	0.76	+0.4
2,074,626	-		GFF2040	0.76	+0.0
2,074,638	-		GFF2040	0.78	-1.2
2,074,667	+		GFF2040	0.81	-1.2
2,074,673	+		GFF2040	0.81	-0.5
2,074,679	-		GFF2040	0.82	-0.3
2,074,704	+		GFF2040	0.85	-0.6
2,074,736	+		GFF2040	0.88	-0.2
2,074,771	+				-0.3
2,074,771	+				-0.2
2,074,775	+				-2.5
2,074,780	+				+0.6
2,074,800	+				+1.1
2,074,800	+				+0.2
2,074,808	-				+0.0
2,074,810	-				-2.9
2,074,818	+				-0.5
2,074,821	+				-3.0
2,074,822	+				+0.8
2,074,826	+				+0.1
2,074,834	-				-0.3
2,074,839	+				-0.4
2,074,858	-				+1.1
2,074,858	-				+1.1
2,074,879	+				-2.3
2,074,925	-				-0.5
2,074,936	+				+0.4
2,074,940	-				+0.5
2,074,952	+				+0.0
2,074,986	+				+0.3
2,074,994	-				-0.1
2,074,994	-				-0.9
2,074,996	+				+0.6
2,075,035	+				+0.4
2,075,035	+				+0.3
2,075,035	+				-0.9
2,075,035	+				+0.3
2,075,039	-				+0.2
2,075,052	+				+0.1
2,075,079	+		GFF2041	0.10	+0.6
2,075,109	+		GFF2041	0.11	-0.2
2,075,109	-		GFF2041	0.11	+1.1
2,075,128	+		GFF2041	0.12	+1.5
2,075,134	-		GFF2041	0.12	-0.5
2,075,170	+		GFF2041	0.14	-0.2
2,075,170	+		GFF2041	0.14	-0.8
2,075,178	-		GFF2041	0.14	+0.7
2,075,222	+		GFF2041	0.16	+0.1
2,075,230	+		GFF2041	0.16	-0.4
2,075,230	-		GFF2041	0.16	-1.8
2,075,230	-		GFF2041	0.16	+0.2
2,075,230	-		GFF2041	0.16	-1.4
2,075,235	+		GFF2041	0.17	-2.6
2,075,235	+		GFF2041	0.17	-0.9
2,075,240	+		GFF2041	0.17	-1.0
2,075,240	+		GFF2041	0.17	+0.6
2,075,243	-		GFF2041	0.17	-0.6
2,075,248	-		GFF2041	0.17	-1.4
2,075,248	-		GFF2041	0.17	+0.8
2,075,248	-		GFF2041	0.17	-1.3
2,075,263	+		GFF2041	0.18	-0.6
2,075,263	+		GFF2041	0.18	+0.0
2,075,271	-		GFF2041	0.18	-0.3
2,075,285	+		GFF2041	0.19	-0.2
2,075,285	+		GFF2041	0.19	+0.8
2,075,287	+		GFF2041	0.19	-1.6
2,075,287	+		GFF2041	0.19	-1.4
2,075,287	+		GFF2041	0.19	+0.1
2,075,287	+		GFF2041	0.19	+1.2
2,075,287	+		GFF2041	0.19	-0.3
2,075,295	-		GFF2041	0.19	-1.0
2,075,295	-		GFF2041	0.19	-0.1
2,075,295	-		GFF2041	0.19	-0.1
2,075,296	+		GFF2041	0.19	-0.6
2,075,301	+		GFF2041	0.19	-0.8
2,075,301	+		GFF2041	0.19	+0.3
2,075,306	+		GFF2041	0.20	-1.1
2,075,311	+		GFF2041	0.20	-0.2
2,075,311	+		GFF2041	0.20	-1.4
2,075,311	+		GFF2041	0.20	-0.7
2,075,311	+		GFF2041	0.20	-0.4
2,075,311	+		GFF2041	0.20	-1.3
2,075,311	+		GFF2041	0.20	+0.3
2,075,314	-		GFF2041	0.20	-0.4
2,075,314	-		GFF2041	0.20	-1.4
2,075,314	-		GFF2041	0.20	-0.6
2,075,319	-		GFF2041	0.20	-0.8
2,075,319	-		GFF2041	0.20	-1.0
2,075,319	-		GFF2041	0.20	+0.6
2,075,319	-		GFF2041	0.20	+0.1
2,075,319	-		GFF2041	0.20	-1.7
2,075,319	-		GFF2041	0.20	-0.5
2,075,319	-		GFF2041	0.20	+1.6
2,075,319	-		GFF2041	0.20	-0.2
2,075,319	-		GFF2041	0.20	+0.8
2,075,319	-		GFF2041	0.20	+0.4
2,075,319	-		GFF2041	0.20	-1.1
2,075,319	-		GFF2041	0.20	+0.5
2,075,319	-		GFF2041	0.20	+1.0
2,075,319	-		GFF2041	0.20	-0.5
2,075,319	-		GFF2041	0.20	+0.5
2,075,321	+		GFF2041	0.20	+0.6
2,075,326	+		GFF2041	0.20	-1.1
2,075,326	+		GFF2041	0.20	-1.1
2,075,334	-		GFF2041	0.21	+0.9
2,075,334	-		GFF2041	0.21	-0.7
2,075,334	-		GFF2041	0.21	-2.4
2,075,334	-		GFF2041	0.21	-2.0
2,075,334	-		GFF2041	0.21	-0.3
2,075,352	-		GFF2041	0.21	-0.4
2,075,352	-		GFF2041	0.21	-1.2
2,075,357	-		GFF2041	0.22	+0.6
2,075,357	-		GFF2041	0.22	+1.2
2,075,357	-		GFF2041	0.22	-0.2
2,075,362	-		GFF2041	0.22	+0.5
2,075,389	-		GFF2041	0.23	+0.2
2,075,389	-		GFF2041	0.23	-2.3
2,075,412	+		GFF2041	0.24	-0.1
2,075,428	+		GFF2041	0.24	-1.0
2,075,428	+		GFF2041	0.24	+1.0
2,075,428	+		GFF2041	0.24	+0.8
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2,075,467	-		GFF2041	0.26	-0.2
2,075,481	+		GFF2041	0.27	-1.8
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2,075,481	+		GFF2041	0.27	-1.8
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2,075,489	-		GFF2041	0.27	-0.6
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2,075,620	+		GFF2041	0.32	-1.8
2,075,645	-		GFF2041	0.33	-1.7
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2,075,762	+		GFF2041	0.38	-1.8
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2,075,797	+		GFF2041	0.40	-1.3
2,075,823	+		GFF2041	0.41	+1.0