Strain Fitness in Sphingobium sp. HT1-2 around GFF2035

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,064,885	-		GFF2034	0.32	-2.2
2,064,888	-		GFF2034	0.33	-1.5
2,064,915	-		GFF2034	0.34	-1.5
2,064,915	-		GFF2034	0.34	-1.7
2,064,915	-		GFF2034	0.34	-1.6
2,064,928	+		GFF2034	0.35	-1.6
2,064,941	+		GFF2034	0.36	+0.8
2,064,942	+		GFF2034	0.36	-1.5
2,064,944	-		GFF2034	0.36	-2.3
2,064,968	-		GFF2034	0.38	-0.7
2,064,968	-		GFF2034	0.38	-1.2
2,065,016	-		GFF2034	0.41	-0.9
2,065,066	+		GFF2034	0.45	-1.2
2,065,066	+		GFF2034	0.45	+0.1
2,065,066	+		GFF2034	0.45	+0.4
2,065,066	+		GFF2034	0.45	+1.0
2,065,066	+		GFF2034	0.45	-1.1
2,065,066	+		GFF2034	0.45	-1.5
2,065,066	+		GFF2034	0.45	+0.0
2,065,074	-		GFF2034	0.45	-1.9
2,065,074	-		GFF2034	0.45	-1.4
2,065,074	-		GFF2034	0.45	-3.3
2,065,074	-		GFF2034	0.45	+0.8
2,065,074	-		GFF2034	0.45	-1.2
2,065,074	-		GFF2034	0.45	-1.0
2,065,074	-		GFF2034	0.45	+0.2
2,065,093	-		GFF2034	0.47	-0.3
2,065,140	-		GFF2034	0.50	-0.7
2,065,142	-		GFF2034	0.50	-0.7
2,065,143	-		GFF2034	0.50	-0.7
2,065,150	-		GFF2034	0.51	-2.8
2,065,170	+		GFF2034	0.52	+0.0
2,065,177	-		GFF2034	0.53	-2.0
2,065,178	-		GFF2034	0.53	-1.3
2,065,178	-		GFF2034	0.53	-1.8
2,065,178	-		GFF2034	0.53	-1.1
2,065,178	-		GFF2034	0.53	-0.1
2,065,178	-		GFF2034	0.53	-0.5
2,065,190	-		GFF2034	0.53	+0.3
2,065,210	+		GFF2034	0.55	+0.3
2,065,214	+		GFF2034	0.55	-0.5
2,065,218	-		GFF2034	0.55	-1.2
2,065,218	-		GFF2034	0.55	-1.4
2,065,219	+		GFF2034	0.55	-1.4
2,065,223	-		GFF2034	0.56	-0.4
2,065,248	+		GFF2034	0.57	-1.1
2,065,296	+		GFF2034	0.61	-1.9
2,065,345	+		GFF2034	0.64	-1.4
2,065,345	+		GFF2034	0.64	-1.3
2,065,348	-		GFF2034	0.64	-1.1
2,065,365	+		GFF2034	0.66	-1.4
2,065,370	+		GFF2034	0.66	-1.5
2,065,370	+		GFF2034	0.66	-0.8
2,065,370	+		GFF2034	0.66	-2.4
2,065,373	-		GFF2034	0.66	-2.1
2,065,378	-		GFF2034	0.66	-0.8
2,065,381	+		GFF2034	0.67	-1.8
2,065,381	+		GFF2034	0.67	-1.8
2,065,402	-		GFF2034	0.68	-2.3
2,065,402	-		GFF2034	0.68	-2.1
2,065,404	+		GFF2034	0.68	-3.3
2,065,406	-		GFF2034	0.68	+1.0
2,065,412	-		GFF2034	0.69	-1.9
2,065,463	-		GFF2034	0.72	+0.1
2,065,482	-		GFF2034	0.74	-1.6
2,065,503	+		GFF2034	0.75	-1.2
2,065,515	-		GFF2034	0.76	+0.7
2,065,562	-		GFF2034	0.79	-1.1
2,065,573	+		GFF2034	0.80	-1.8
2,065,573	+		GFF2034	0.80	+0.0
2,065,573	+		GFF2034	0.80	-0.3
2,065,573	+		GFF2034	0.80	-2.1
2,065,579	+		GFF2034	0.80	+0.4
2,065,581	-		GFF2034	0.80	-0.1
2,065,587	-		GFF2034	0.81	-0.1
2,065,587	-		GFF2034	0.81	-0.1
2,065,611	+		GFF2034	0.83	+0.2
2,065,674	-		GFF2034	0.87	-1.4
2,065,676	+		GFF2034	0.87	+0.5
2,065,676	+		GFF2034	0.87	-1.7
2,065,682	-		GFF2034	0.87	+0.6
2,065,692	-		GFF2034	0.88	-1.1
2,065,696	+		GFF2034	0.88	+0.6
2,065,702	+		GFF2034	0.89	-0.4
2,065,702	+		GFF2034	0.89	-1.9
2,065,704	-		GFF2034	0.89	-1.0
2,065,704	-		GFF2034	0.89	-1.6
2,065,704	-		GFF2034	0.89	+0.5
2,065,704	-		GFF2034	0.89	-0.2
2,065,704	-		GFF2034	0.89	-2.1
2,065,710	-		GFF2034	0.89	-2.5
2,065,710	-		GFF2034	0.89	-1.6
2,065,710	-		GFF2034	0.89	-0.5
2,065,710	-		GFF2034	0.89	+0.1
2,065,710	-		GFF2034	0.89	-2.5
2,065,710	-		GFF2034	0.89	-1.2
2,065,715	-		GFF2034	0.90	-1.3
2,065,720	-				-2.1
2,065,739	+				-2.7
2,065,752	+				-0.9
2,065,760	-				-1.1
2,065,768	-				+0.7
2,065,777	+				-1.9
2,065,806	-				-0.3
2,065,811	+				-0.7
2,065,816	+				-2.6
2,065,816	+				-2.0
2,065,816	+				-1.8
2,065,816	+				-1.4
2,065,816	+				-0.6
2,065,824	-				-1.3
2,065,824	-				-1.3
2,065,824	-				-2.2
2,065,824	-				-2.1
2,065,824	-				+0.6
2,065,824	-				-2.0
2,065,824	-				-1.7
2,065,824	-				-2.4
2,065,824	-				+1.6
2,065,824	-				-1.2
2,065,824	-				-1.2
2,065,896	+				-0.1
2,065,904	-				-0.8
2,065,919	-				-0.3
2,065,958	+				+0.5
2,065,972	-				-1.4
2,065,981	+				-0.8
2,065,984	-				+0.1
2,066,016	+		GFF2035	0.11	+0.0
2,066,024	-		GFF2035	0.12	-1.4
2,066,024	-		GFF2035	0.12	+1.7
2,066,024	-		GFF2035	0.12	-1.1
2,066,026	+		GFF2035	0.12	+0.2
2,066,034	-		GFF2035	0.12	+0.8
2,066,049	-		GFF2035	0.14	-0.6
2,066,059	+		GFF2035	0.14	+0.3
2,066,077	-		GFF2035	0.16	-1.9
2,066,093	+		GFF2035	0.17	+0.5
2,066,094	+		GFF2035	0.17	-0.1
2,066,140	+		GFF2035	0.21	+0.7
2,066,145	+		GFF2035	0.21	+0.6
2,066,211	-		GFF2035	0.27	+0.7
2,066,216	-		GFF2035	0.27	+0.3
2,066,227	+		GFF2035	0.28	-0.5
2,066,227	+		GFF2035	0.28	+0.2
2,066,227	+		GFF2035	0.28	+0.3
2,066,227	+		GFF2035	0.28	+1.0
2,066,227	+		GFF2035	0.28	+0.7
2,066,235	-		GFF2035	0.28	+0.8
2,066,235	-		GFF2035	0.28	-0.3
2,066,235	-		GFF2035	0.28	-1.0
2,066,235	-		GFF2035	0.28	-0.2
2,066,237	+		GFF2035	0.29	-0.4
2,066,245	-		GFF2035	0.29	-2.1
2,066,245	-		GFF2035	0.29	+0.8
2,066,245	-		GFF2035	0.29	-0.3
2,066,245	-		GFF2035	0.29	+0.0
2,066,246	-		GFF2035	0.29	-0.8
2,066,258	+		GFF2035	0.30	-0.1
2,066,266	+		GFF2035	0.31	-1.2
2,066,266	+		GFF2035	0.31	+0.3
2,066,266	+		GFF2035	0.31	-0.3
2,066,268	-		GFF2035	0.31	+0.2
2,066,271	+		GFF2035	0.31	-1.0
2,066,271	+		GFF2035	0.31	+0.3
2,066,274	-		GFF2035	0.32	-0.5
2,066,274	-		GFF2035	0.32	+0.5
2,066,274	-		GFF2035	0.32	+0.6
2,066,274	-		GFF2035	0.32	-1.2
2,066,284	-		GFF2035	0.32	-0.2
2,066,284	-		GFF2035	0.32	-0.3
2,066,293	+		GFF2035	0.33	-0.7
2,066,293	+		GFF2035	0.33	+0.5
2,066,306	-		GFF2035	0.34	+0.7
2,066,306	-		GFF2035	0.34	-0.3
2,066,306	-		GFF2035	0.34	+1.4
2,066,324	-		GFF2035	0.35	+0.9
2,066,326	+		GFF2035	0.36	-0.6
2,066,456	+		GFF2035	0.46	-0.5
2,066,456	+		GFF2035	0.46	-1.6
2,066,517	-		GFF2035	0.51	+1.1
2,066,538	+		GFF2035	0.52	-2.4
2,066,546	-		GFF2035	0.53	+0.2
2,066,548	+		GFF2035	0.53	-0.1
2,066,556	-		GFF2035	0.54	-0.6
2,066,556	-		GFF2035	0.54	-3.2
2,066,556	-		GFF2035	0.54	+0.6
2,066,556	-		GFF2035	0.54	-1.6
2,066,568	+		GFF2035	0.55	+1.1
2,066,568	+		GFF2035	0.55	-1.7
2,066,570	-		GFF2035	0.55	-1.3
2,066,576	-		GFF2035	0.55	+0.3
2,066,594	+		GFF2035	0.57	-0.8
2,066,599	+		GFF2035	0.57	+0.4
2,066,626	-		GFF2035	0.59	-0.3
2,066,626	-		GFF2035	0.59	+0.3
2,066,631	-		GFF2035	0.60	-0.8
2,066,645	-		GFF2035	0.61	-1.0
2,066,645	-		GFF2035	0.61	-1.8
2,066,645	-		GFF2035	0.61	+0.9
2,066,653	+		GFF2035	0.62	-1.9
2,066,653	+		GFF2035	0.62	-2.0
2,066,653	+		GFF2035	0.62	+0.2
2,066,653	+		GFF2035	0.62	+0.3
2,066,653	+		GFF2035	0.62	-0.9
2,066,653	+		GFF2035	0.62	-1.3
2,066,653	+		GFF2035	0.62	+1.3
2,066,653	+		GFF2035	0.62	-1.6
2,066,653	+		GFF2035	0.62	+0.3
2,066,653	+		GFF2035	0.62	-2.4
2,066,653	+		GFF2035	0.62	-0.7
2,066,661	-		GFF2035	0.62	-1.7
2,066,661	-		GFF2035	0.62	-2.4
2,066,661	-		GFF2035	0.62	-0.5
2,066,661	-		GFF2035	0.62	-2.2
2,066,661	-		GFF2035	0.62	+0.3
2,066,661	-		GFF2035	0.62	-0.7
2,066,661	-		GFF2035	0.62	-1.8
2,066,675	-		GFF2035	0.63	-2.4
2,066,687	+		GFF2035	0.64	+0.2
2,066,703	+		GFF2035	0.66	-0.8
2,066,729	-		GFF2035	0.68	+0.9
2,066,792	+		GFF2035	0.73	+1.0
2,066,808	+		GFF2035	0.74	-0.2
2,066,808	+		GFF2035	0.74	-0.1
2,066,810	-		GFF2035	0.74	+0.8
2,066,814	+		GFF2035	0.74	-0.6
2,066,816	-		GFF2035	0.75	-0.4
2,066,816	-		GFF2035	0.75	+0.8
2,066,823	-		GFF2035	0.75	-2.2
2,066,835	+		GFF2035	0.76	+0.5
2,066,853	-		GFF2035	0.77	-0.2
2,066,860	-		GFF2035	0.78	-0.5
2,066,931	+		GFF2035	0.84	-0.7
2,066,931	+		GFF2035	0.84	-0.8
2,066,931	+		GFF2035	0.84	+1.4
2,066,931	+		GFF2035	0.84	-1.4
2,066,931	+		GFF2035	0.84	+0.1
2,066,931	+		GFF2035	0.84	+0.8
2,066,931	+		GFF2035	0.84	-1.0
2,066,931	+		GFF2035	0.84	-1.4
2,066,931	+		GFF2035	0.84	+0.9
2,066,931	+		GFF2035	0.84	-1.2
2,066,931	+		GFF2035	0.84	+0.7
2,066,931	+		GFF2035	0.84	-0.2
2,066,931	+		GFF2035	0.84	-1.9
2,066,931	+		GFF2035	0.84	+0.3
2,066,931	+		GFF2035	0.84	-2.2
2,066,931	+		GFF2035	0.84	-0.6
2,066,931	+		GFF2035	0.84	-0.7
2,066,939	-		GFF2035	0.84	-2.5
2,066,939	-		GFF2035	0.84	-0.6
2,066,939	-		GFF2035	0.84	-0.7
2,066,939	-		GFF2035	0.84	+0.2
2,066,939	-		GFF2035	0.84	-0.8
2,066,939	-		GFF2035	0.84	+0.4
2,066,939	-		GFF2035	0.84	-1.8
2,066,939	-		GFF2035	0.84	+0.0
2,066,939	-		GFF2035	0.84	+0.6
2,066,939	-		GFF2035	0.84	-0.6
2,066,939	-		GFF2035	0.84	-0.2
2,066,939	-		GFF2035	0.84	-0.1
2,066,939	-		GFF2035	0.84	+0.8
2,066,939	-		GFF2035	0.84	-0.8
2,066,939	-		GFF2035	0.84	+0.4
2,066,939	-		GFF2035	0.84	-0.3
2,066,939	-		GFF2035	0.84	-1.6
2,066,939	-		GFF2035	0.84	-1.2
2,066,939	-		GFF2035	0.84	-0.3
2,066,939	-		GFF2035	0.84	+1.1
2,066,939	-		GFF2035	0.84	+0.6
2,066,939	-		GFF2035	0.84	+0.5
2,066,939	-		GFF2035	0.84	+0.7
2,066,939	-		GFF2035	0.84	-2.1
2,066,939	-		GFF2035	0.84	-2.4
2,066,939	-		GFF2035	0.84	-0.2
2,066,939	-		GFF2035	0.84	-0.4
2,066,959	+		GFF2035	0.86	+0.2
2,066,967	+		GFF2035	0.87	+0.7
2,066,967	+		GFF2035	0.87	-1.4
2,066,967	+		GFF2035	0.87	+1.0
2,066,972	+		GFF2035	0.87	+1.0
2,066,975	-		GFF2035	0.87	-0.8
2,066,975	-		GFF2035	0.87	-0.5
2,066,977	+		GFF2035	0.87	+1.3
2,066,979	+		GFF2035	0.87	+1.3
2,066,979	+		GFF2035	0.87	-0.9
2,066,979	+		GFF2035	0.87	-0.1
2,066,979	+		GFF2035	0.87	+0.6
2,066,979	+		GFF2035	0.87	+0.0
2,066,979	+		GFF2035	0.87	-0.2
2,066,984	+		GFF2035	0.88	+0.7
2,066,987	-		GFF2035	0.88	-0.3
2,066,987	-		GFF2035	0.88	+1.3
2,066,987	-		GFF2035	0.88	-0.5
2,066,987	-		GFF2035	0.88	-2.3
2,066,987	-		GFF2035	0.88	-0.4
2,066,987	-		GFF2035	0.88	-0.2
2,066,989	+		GFF2035	0.88	-0.4
2,066,992	-		GFF2035	0.88	-1.3
2,067,033	+				+0.7
2,067,063	-				-0.5
2,067,064	+				-0.8
2,067,072	-				+0.9
2,067,095	+				+0.8
2,067,095	+				-0.1
2,067,096	-				-0.4
2,067,096	-				-0.7
2,067,096	-				-1.2
2,067,096	-				-1.4
2,067,096	-				-0.3
2,067,098	-				-1.1
2,067,134	+				+0.1
2,067,144	+				+0.6
2,067,152	-				+1.5
2,067,189	-				-0.3
2,067,191	+				-0.4
2,067,194	-				-0.3
2,067,254	+				+1.4
2,067,255	+				-1.2
2,067,306	+				+0.2
2,067,306	+				-2.6
2,067,459	+		GFF2036	0.13	-1.3
2,067,469	+		GFF2036	0.13	+1.3
2,067,469	+		GFF2036	0.13	-0.1
2,067,469	+		GFF2036	0.13	-1.3
2,067,470	+		GFF2036	0.13	-1.3
2,067,477	-		GFF2036	0.13	-2.4
2,067,537	+		GFF2036	0.16	-0.2
2,067,558	+		GFF2036	0.17	-1.1
2,067,558	+		GFF2036	0.17	+0.3
2,067,558	+		GFF2036	0.17	-1.9
2,067,558	+		GFF2036	0.17	-0.3
2,067,562	+		GFF2036	0.17	-1.7
2,067,583	+		GFF2036	0.18	-0.3
2,067,591	-		GFF2036	0.19	+0.4
2,067,598	+		GFF2036	0.19	-0.2
2,067,602	-		GFF2036	0.19	-0.1
2,067,612	-		GFF2036	0.20	-1.7
2,067,635	-		GFF2036	0.21	+1.3
2,067,647	-		GFF2036	0.21	-2.0
2,067,663	+		GFF2036	0.22	-1.2
2,067,663	+		GFF2036	0.22	-0.6
2,067,682	-		GFF2036	0.23	-1.1
2,067,688	-		GFF2036	0.23	-1.6
2,067,804	+		GFF2036	0.28	-0.6
2,067,804	+		GFF2036	0.28	+0.7
2,067,804	+		GFF2036	0.28	-1.1
2,067,809	+		GFF2036	0.29	-1.7
2,067,812	-		GFF2036	0.29	-1.6
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