Strain Fitness in Sphingobium sp. HT1-2 around GFF2032

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,060,805	-		GFF2031	0.19	-0.7
2,060,838	-		GFF2031	0.22	+0.3
2,060,839	+		GFF2031	0.22	+0.0
2,060,839	+		GFF2031	0.22	+0.3
2,060,843	+		GFF2031	0.23	-0.2
2,060,869	+		GFF2031	0.25	-1.6
2,060,869	+		GFF2031	0.25	-1.2
2,060,869	+		GFF2031	0.25	-0.3
2,060,869	+		GFF2031	0.25	+1.1
2,060,869	+		GFF2031	0.25	+0.1
2,060,869	+		GFF2031	0.25	-0.5
2,060,869	+		GFF2031	0.25	-2.0
2,060,869	+		GFF2031	0.25	+0.2
2,060,869	+		GFF2031	0.25	+0.1
2,060,869	+		GFF2031	0.25	+0.4
2,060,869	+		GFF2031	0.25	-0.6
2,060,869	+		GFF2031	0.25	-0.4
2,060,869	+		GFF2031	0.25	-1.9
2,060,869	+		GFF2031	0.25	-0.4
2,060,869	+		GFF2031	0.25	-0.4
2,060,869	+		GFF2031	0.25	+0.0
2,060,869	+		GFF2031	0.25	+0.3
2,060,869	+		GFF2031	0.25	+1.8
2,060,869	+		GFF2031	0.25	-1.0
2,060,877	-		GFF2031	0.26	+0.6
2,060,877	-		GFF2031	0.26	+1.0
2,060,877	-		GFF2031	0.26	+0.0
2,060,877	-		GFF2031	0.26	+0.3
2,060,877	-		GFF2031	0.26	-0.2
2,060,877	-		GFF2031	0.26	-1.4
2,060,877	-		GFF2031	0.26	-0.9
2,060,877	-		GFF2031	0.26	-0.7
2,060,877	-		GFF2031	0.26	-0.9
2,060,877	-		GFF2031	0.26	-1.9
2,060,877	-		GFF2031	0.26	-0.2
2,060,877	-		GFF2031	0.26	-1.0
2,060,877	-		GFF2031	0.26	-0.2
2,060,877	-		GFF2031	0.26	-1.2
2,060,877	-		GFF2031	0.26	+0.4
2,060,877	-		GFF2031	0.26	+0.7
2,060,877	-		GFF2031	0.26	-0.9
2,060,877	-		GFF2031	0.26	-1.0
2,060,877	-		GFF2031	0.26	-1.1
2,060,877	-		GFF2031	0.26	-1.1
2,060,904	-		GFF2031	0.28	+0.3
2,060,904	-		GFF2031	0.28	-1.4
2,060,915	-		GFF2031	0.29	-2.4
2,060,917	+		GFF2031	0.30	-0.2
2,060,922	+		GFF2031	0.30	-0.9
2,060,932	+		GFF2031	0.31	-0.5
2,060,942	+		GFF2031	0.32	+1.4
2,060,942	-		GFF2031	0.32	+0.8
2,060,982	+		GFF2031	0.36	+0.0
2,061,023	+		GFF2031	0.40	+0.3
2,061,033	+		GFF2031	0.41	+0.6
2,061,043	+		GFF2031	0.42	+0.7
2,061,043	+		GFF2031	0.42	-1.2
2,061,043	+		GFF2031	0.42	-1.3
2,061,043	+		GFF2031	0.42	-1.4
2,061,043	+		GFF2031	0.42	-1.0
2,061,043	+		GFF2031	0.42	-1.1
2,061,043	+		GFF2031	0.42	-0.5
2,061,043	+		GFF2031	0.42	-1.5
2,061,043	+		GFF2031	0.42	-0.7
2,061,051	-		GFF2031	0.42	+1.6
2,061,051	-		GFF2031	0.42	-0.1
2,061,051	-		GFF2031	0.42	-0.4
2,061,051	-		GFF2031	0.42	+0.2
2,061,051	-		GFF2031	0.42	-0.2
2,061,051	-		GFF2031	0.42	-0.7
2,061,051	-		GFF2031	0.42	+0.3
2,061,051	-		GFF2031	0.42	+0.5
2,061,053	+		GFF2031	0.42	+0.7
2,061,053	+		GFF2031	0.42	-0.6
2,061,061	-		GFF2031	0.43	-0.1
2,061,061	-		GFF2031	0.43	-1.0
2,061,061	-		GFF2031	0.43	-0.4
2,061,061	-		GFF2031	0.43	+1.5
2,061,061	-		GFF2031	0.43	+0.3
2,061,106	+		GFF2031	0.47	-1.5
2,061,139	+		GFF2031	0.51	+1.3
2,061,153	+		GFF2031	0.52	-0.5
2,061,161	-		GFF2031	0.53	-0.9
2,061,175	-		GFF2031	0.54	-1.4
2,061,178	+		GFF2031	0.54	+0.5
2,061,178	+		GFF2031	0.54	-1.3
2,061,178	+		GFF2031	0.54	-1.2
2,061,186	-		GFF2031	0.55	-0.2
2,061,196	+		GFF2031	0.56	+0.1
2,061,202	+		GFF2031	0.56	+0.4
2,061,202	+		GFF2031	0.56	-1.9
2,061,202	+		GFF2031	0.56	+0.9
2,061,202	+		GFF2031	0.56	+1.6
2,061,204	-		GFF2031	0.57	+1.0
2,061,207	+		GFF2031	0.57	-1.3
2,061,207	+		GFF2031	0.57	-2.2
2,061,207	+		GFF2031	0.57	+0.1
2,061,207	+		GFF2031	0.57	+0.6
2,061,207	+		GFF2031	0.57	+0.5
2,061,207	+		GFF2031	0.57	-1.8
2,061,207	+		GFF2031	0.57	-1.5
2,061,210	-		GFF2031	0.57	-0.3
2,061,210	-		GFF2031	0.57	+0.6
2,061,210	-		GFF2031	0.57	+0.6
2,061,210	-		GFF2031	0.57	-1.1
2,061,210	-		GFF2031	0.57	-1.0
2,061,210	-		GFF2031	0.57	+0.2
2,061,210	-		GFF2031	0.57	+0.1
2,061,215	-		GFF2031	0.58	+0.9
2,061,215	-		GFF2031	0.58	-2.1
2,061,215	-		GFF2031	0.58	+1.0
2,061,215	-		GFF2031	0.58	-1.3
2,061,219	+		GFF2031	0.58	-0.5
2,061,219	+		GFF2031	0.58	+0.1
2,061,219	+		GFF2031	0.58	+0.4
2,061,243	+		GFF2031	0.60	-1.6
2,061,251	+		GFF2031	0.61	-0.3
2,061,251	+		GFF2031	0.61	+0.7
2,061,251	+		GFF2031	0.61	-0.5
2,061,253	+		GFF2031	0.61	-0.1
2,061,259	-		GFF2031	0.62	+0.1
2,061,259	-		GFF2031	0.62	+0.3
2,061,261	-		GFF2031	0.62	-0.2
2,061,261	-		GFF2031	0.62	+0.1
2,061,273	-		GFF2031	0.63	+0.6
2,061,292	+		GFF2031	0.65	+0.4
2,061,297	+		GFF2031	0.65	-0.6
2,061,297	+		GFF2031	0.65	-0.5
2,061,297	+		GFF2031	0.65	-0.3
2,061,297	+		GFF2031	0.65	+0.3
2,061,297	+		GFF2031	0.65	+0.4
2,061,297	+		GFF2031	0.65	-0.8
2,061,297	+		GFF2031	0.65	-1.0
2,061,297	+		GFF2031	0.65	-1.6
2,061,297	+		GFF2031	0.65	-0.5
2,061,300	-		GFF2031	0.66	+0.9
2,061,303	-		GFF2031	0.66	+0.9
2,061,305	-		GFF2031	0.66	-1.8
2,061,305	-		GFF2031	0.66	-0.3
2,061,305	-		GFF2031	0.66	-2.0
2,061,305	-		GFF2031	0.66	-2.2
2,061,305	-		GFF2031	0.66	-0.9
2,061,305	-		GFF2031	0.66	-0.3
2,061,305	-		GFF2031	0.66	+0.3
2,061,305	-		GFF2031	0.66	+0.6
2,061,305	-		GFF2031	0.66	-1.1
2,061,305	-		GFF2031	0.66	+0.9
2,061,305	-		GFF2031	0.66	+0.6
2,061,305	-		GFF2031	0.66	-1.9
2,061,305	-		GFF2031	0.66	-1.6
2,061,305	-		GFF2031	0.66	+0.1
2,061,305	-		GFF2031	0.66	-1.6
2,061,305	-		GFF2031	0.66	-1.9
2,061,305	-		GFF2031	0.66	-0.9
2,061,305	-		GFF2031	0.66	-0.2
2,061,305	-		GFF2031	0.66	+0.9
2,061,305	-		GFF2031	0.66	-2.6
2,061,305	-		GFF2031	0.66	-0.1
2,061,355	+		GFF2031	0.71	-0.4
2,061,363	-		GFF2031	0.72	-1.3
2,061,373	-		GFF2031	0.72	+0.5
2,061,378	-		GFF2031	0.73	+0.4
2,061,384	-		GFF2031	0.74	+0.3
2,061,394	-		GFF2031	0.74	-0.1
2,061,394	-		GFF2031	0.74	-0.1
2,061,416	-		GFF2031	0.77	-0.1
2,061,430	+		GFF2031	0.78	+0.9
2,061,430	+		GFF2031	0.78	-1.4
2,061,436	+		GFF2031	0.78	-1.4
2,061,444	-		GFF2031	0.79	-0.3
2,061,444	-		GFF2031	0.79	-0.7
2,061,488	+		GFF2031	0.83	-1.3
2,061,488	+		GFF2031	0.83	-0.5
2,061,496	-		GFF2031	0.84	-1.5
2,061,496	-		GFF2031	0.84	-1.0
2,061,496	-		GFF2031	0.84	-0.6
2,061,501	+		GFF2031	0.85	-0.7
2,061,515	+		GFF2031	0.86	-0.1
2,061,515	+		GFF2031	0.86	-0.2
2,061,515	+		GFF2031	0.86	-1.3
2,061,523	-		GFF2031	0.87	-0.7
2,061,523	-		GFF2031	0.87	-0.1
2,061,530	-		GFF2031	0.87	-1.0
2,061,545	-		GFF2031	0.89	+1.2
2,061,545	-		GFF2031	0.89	-1.0
2,061,548	+		GFF2031	0.89	-2.3
2,061,562	-				+0.0
2,061,569	+				+0.2
2,061,578	-				+0.8
2,061,603	+				-0.8
2,061,603	+				+1.2
2,061,611	-				+0.0
2,061,611	-				-0.3
2,061,618	+				-0.7
2,061,633	+				+1.4
2,061,633	+				-1.1
2,061,641	-				+1.0
2,061,641	-				+0.1
2,061,646	-				-0.5
2,061,650	+				-0.7
2,061,650	+				-0.0
2,061,650	+				+0.2
2,061,650	+				+0.2
2,061,650	+				-0.9
2,061,658	-				+0.7
2,061,658	-				-0.4
2,061,658	-				+0.7
2,061,658	-				+0.8
2,061,702	+				+0.6
2,061,702	+				+0.2
2,061,710	+				+1.1
2,061,718	-				-0.0
2,061,752	+				-0.3
2,061,752	-				+0.0
2,061,760	-				-1.7
2,061,777	+				-1.1
2,061,777	+				-2.1
2,061,778	+				-0.3
2,061,778	+				-0.6
2,061,786	-				-1.1
2,061,786	-				+0.1
2,061,838	+				-0.4
2,061,838	+				+0.3
2,061,841	-				-1.7
2,061,841	-				-0.1
2,061,841	-				-2.3
2,061,841	-				-1.0
2,061,846	-				-0.8
2,061,846	-				-1.5
2,061,848	-				-0.9
2,061,875	+		GFF2032	0.14	+0.3
2,061,883	+		GFF2032	0.15	-1.6
2,061,891	-		GFF2032	0.16	-2.3
2,061,892	-		GFF2032	0.17	+0.4
2,061,892	-		GFF2032	0.17	-0.1
2,061,905	+		GFF2032	0.19	-0.3
2,061,908	-		GFF2032	0.19	+0.7
2,061,910	+		GFF2032	0.19	-1.2
2,061,968	-		GFF2032	0.29	-0.0
2,061,968	-		GFF2032	0.29	-0.4
2,061,968	-		GFF2032	0.29	-0.1
2,061,976	-		GFF2032	0.30	-1.0
2,062,014	-		GFF2032	0.36	-1.6
2,062,014	-		GFF2032	0.36	+1.0
2,062,014	-		GFF2032	0.36	-2.1
2,062,014	-		GFF2032	0.36	+0.4
2,062,076	-		GFF2032	0.46	-1.4
2,062,076	-		GFF2032	0.46	-0.2
2,062,085	-		GFF2032	0.47	+1.2
2,062,085	-		GFF2032	0.47	-2.2
2,062,093	+		GFF2032	0.48	-0.3
2,062,101	-		GFF2032	0.50	+0.8
2,062,101	-		GFF2032	0.50	-0.1
2,062,124	+		GFF2032	0.53	-2.7
2,062,127	-		GFF2032	0.54	-2.9
2,062,132	-		GFF2032	0.55	+0.9
2,062,144	+		GFF2032	0.56	-0.9
2,062,144	+		GFF2032	0.56	-0.4
2,062,144	+		GFF2032	0.56	+0.7
2,062,144	-		GFF2032	0.56	+1.4
2,062,152	-		GFF2032	0.58	-1.3
2,062,152	-		GFF2032	0.58	+1.6
2,062,158	-		GFF2032	0.59	-0.6
2,062,174	-		GFF2032	0.61	-0.7
2,062,174	-		GFF2032	0.61	-1.3
2,062,229	-		GFF2032	0.70	+0.9
2,062,254	-		GFF2032	0.74	+0.7
2,062,260	+		GFF2032	0.75	+0.7
2,062,274	+		GFF2032	0.77	-0.1
2,062,328	+		GFF2032	0.85	-0.5
2,062,328	+		GFF2032	0.85	+0.2
2,062,328	+		GFF2032	0.85	+0.7
2,062,331	-		GFF2032	0.86	+0.9
2,062,336	-		GFF2032	0.87	-2.0
2,062,336	-		GFF2032	0.87	-1.7
2,062,336	-		GFF2032	0.87	-2.1
2,062,336	-		GFF2032	0.87	-0.1
2,062,336	-		GFF2032	0.87	+0.4
2,062,377	-				+0.5
2,062,422	+				-2.1
2,062,428	-				-0.3
2,062,433	+				-1.5
2,062,433	-				-0.5
2,062,435	+				-1.5
2,062,438	-				+0.4
2,062,441	-				+0.2
2,062,441	-				-0.7
2,062,441	-				-0.3
2,062,443	-				+0.2
2,062,444	+				-0.3
2,062,455	+				-0.8
2,062,472	-				-0.4
2,062,498	+				+0.2
2,062,529	+				-1.4
2,062,537	+				+0.6
2,062,542	+				-1.1
2,062,563	+				-1.3
2,062,580	+				-0.1
2,062,644	+				-0.4
2,062,644	+				-0.1
2,062,644	+				-1.3
2,062,644	+				-0.1
2,062,644	+				+1.0
2,062,644	+				-1.0
2,062,644	+				+0.5
2,062,644	+				+0.1
2,062,645	+				+0.4
2,062,647	-				+0.9
2,062,647	-				-0.4
2,062,652	-				-2.2
2,062,652	-				-1.4
2,062,652	-				+0.5
2,062,652	-				-0.2
2,062,691	+				-0.5
2,062,711	+		GFF2033	0.10	-0.1
2,062,712	+		GFF2033	0.10	-0.5
2,062,727	+		GFF2033	0.11	-1.5
2,062,731	+		GFF2033	0.11	+1.0
2,062,731	+		GFF2033	0.11	+0.4
2,062,731	+		GFF2033	0.11	-1.7
2,062,739	-		GFF2033	0.12	-2.0
2,062,753	-		GFF2033	0.12	-1.5
2,062,772	-		GFF2033	0.13	-0.9
2,062,779	+		GFF2033	0.14	+0.3
2,062,779	+		GFF2033	0.14	-0.7
2,062,779	+		GFF2033	0.14	-1.8
2,062,782	+		GFF2033	0.14	-0.2
2,062,787	-		GFF2033	0.14	+0.2
2,062,787	-		GFF2033	0.14	-0.1
2,062,792	-		GFF2033	0.14	+0.1
2,062,792	-		GFF2033	0.14	+1.5
2,062,807	-		GFF2033	0.15	+0.4
2,062,809	+		GFF2033	0.15	+0.6
2,062,816	+		GFF2033	0.16	+0.7
2,062,817	-		GFF2033	0.16	+1.1
2,062,817	-		GFF2033	0.16	-1.1
2,062,824	-		GFF2033	0.16	-1.3
2,062,824	-		GFF2033	0.16	+0.6
2,062,845	+		GFF2033	0.17	-0.7
2,062,853	-		GFF2033	0.18	-1.1
2,062,853	-		GFF2033	0.18	-1.2
2,062,868	+		GFF2033	0.18	-0.8
2,062,868	+		GFF2033	0.18	-1.3
2,062,868	+		GFF2033	0.18	-0.8
2,062,876	-		GFF2033	0.19	-0.4
2,062,876	-		GFF2033	0.19	+0.4
2,062,876	-		GFF2033	0.19	-1.2
2,062,876	-		GFF2033	0.19	-0.0
2,062,876	-		GFF2033	0.19	-0.4
2,062,878	+		GFF2033	0.19	-0.4
2,062,881	-		GFF2033	0.19	+1.2
2,062,894	-		GFF2033	0.20	-0.1
2,062,907	-		GFF2033	0.21	+0.5
2,062,933	+		GFF2033	0.22	+0.0
2,062,935	+		GFF2033	0.22	-1.9
2,062,962	+		GFF2033	0.23	+0.3
2,062,964	+		GFF2033	0.24	+0.5
2,062,964	+		GFF2033	0.24	-0.3
2,062,964	+		GFF2033	0.24	-0.4
2,062,964	+		GFF2033	0.24	+0.6
2,062,964	+		GFF2033	0.24	-1.5
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