Strain Fitness in Sphingobium sp. HT1-2 around GFF2022

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,045,533	-		GFF2021	0.17	+0.4
2,045,540	+		GFF2021	0.18	+0.8
2,045,545	+		GFF2021	0.19	-0.2
2,045,546	+		GFF2021	0.19	+1.0
2,045,546	+		GFF2021	0.19	+0.3
2,045,554	-		GFF2021	0.20	-1.1
2,045,554	-		GFF2021	0.20	+0.8
2,045,560	-		GFF2021	0.21	+0.4
2,045,569	-		GFF2021	0.22	+1.5
2,045,569	-		GFF2021	0.22	-1.7
2,045,575	+		GFF2021	0.22	+0.9
2,045,587	-		GFF2021	0.24	-1.2
2,045,597	+		GFF2021	0.25	-1.4
2,045,614	-		GFF2021	0.27	-0.3
2,045,616	+		GFF2021	0.27	+0.0
2,045,616	+		GFF2021	0.27	-0.3
2,045,621	+		GFF2021	0.28	+0.8
2,045,623	+		GFF2021	0.28	-1.2
2,045,624	-		GFF2021	0.28	+0.3
2,045,631	-		GFF2021	0.29	-1.2
2,045,633	+		GFF2021	0.29	+0.6
2,045,641	-		GFF2021	0.30	-0.8
2,045,664	+		GFF2021	0.33	-1.5
2,045,665	+		GFF2021	0.33	-0.4
2,045,665	+		GFF2021	0.33	-0.4
2,045,669	+		GFF2021	0.33	-2.4
2,045,672	-		GFF2021	0.34	-0.8
2,045,672	-		GFF2021	0.34	-0.9
2,045,673	-		GFF2021	0.34	-1.0
2,045,673	-		GFF2021	0.34	-0.5
2,045,673	-		GFF2021	0.34	-0.5
2,045,682	-		GFF2021	0.35	-0.9
2,045,687	-		GFF2021	0.35	-0.2
2,045,700	+		GFF2021	0.37	-0.6
2,045,700	+		GFF2021	0.37	+0.3
2,045,706	+		GFF2021	0.38	+1.4
2,045,713	+		GFF2021	0.38	-2.0
2,045,713	+		GFF2021	0.38	+0.6
2,045,714	+		GFF2021	0.38	-0.9
2,045,721	-		GFF2021	0.39	-1.1
2,045,721	-		GFF2021	0.39	-1.4
2,045,722	-		GFF2021	0.39	+0.4
2,045,722	-		GFF2021	0.39	-0.9
2,045,733	+		GFF2021	0.41	-2.1
2,045,745	-		GFF2021	0.42	+0.1
2,045,751	-		GFF2021	0.43	+0.4
2,045,751	-		GFF2021	0.43	-1.5
2,045,753	+		GFF2021	0.43	-0.0
2,045,753	+		GFF2021	0.43	+1.4
2,045,760	-		GFF2021	0.44	-1.3
2,045,782	+		GFF2021	0.46	-1.7
2,045,782	+		GFF2021	0.46	-0.4
2,045,784	-		GFF2021	0.47	-2.0
2,045,785	-		GFF2021	0.47	+0.3
2,045,796	+		GFF2021	0.48	+0.6
2,045,804	-		GFF2021	0.49	+0.3
2,045,804	-		GFF2021	0.49	-1.0
2,045,820	+		GFF2021	0.51	-0.9
2,045,820	+		GFF2021	0.51	-0.0
2,045,823	-		GFF2021	0.51	+0.0
2,045,825	+		GFF2021	0.51	-0.0
2,045,828	-		GFF2021	0.52	-0.4
2,045,828	-		GFF2021	0.52	+0.2
2,045,828	-		GFF2021	0.52	+0.8
2,045,833	-		GFF2021	0.52	-0.2
2,045,833	-		GFF2021	0.52	+1.1
2,045,840	-		GFF2021	0.53	+0.2
2,045,842	-		GFF2021	0.53	+1.1
2,045,848	-		GFF2021	0.54	+1.3
2,045,860	-		GFF2021	0.55	-0.4
2,045,862	+		GFF2021	0.56	-0.4
2,045,862	+		GFF2021	0.56	-1.7
2,045,862	+		GFF2021	0.56	+1.1
2,045,865	-		GFF2021	0.56	+0.1
2,045,865	-		GFF2021	0.56	-0.2
2,045,867	+		GFF2021	0.56	+1.2
2,045,867	+		GFF2021	0.56	+0.4
2,045,867	+		GFF2021	0.56	-1.8
2,045,867	+		GFF2021	0.56	-0.4
2,045,867	+		GFF2021	0.56	-1.0
2,045,867	+		GFF2021	0.56	+0.2
2,045,867	+		GFF2021	0.56	+0.2
2,045,867	+		GFF2021	0.56	-0.6
2,045,867	+		GFF2021	0.56	-0.5
2,045,867	+		GFF2021	0.56	-1.2
2,045,867	+		GFF2021	0.56	+0.2
2,045,867	+		GFF2021	0.56	-0.9
2,045,867	+		GFF2021	0.56	+0.6
2,045,867	+		GFF2021	0.56	-1.1
2,045,867	+		GFF2021	0.56	+0.2
2,045,867	+		GFF2021	0.56	-0.8
2,045,867	+		GFF2021	0.56	-0.0
2,045,867	+		GFF2021	0.56	-0.3
2,045,867	+		GFF2021	0.56	-2.1
2,045,870	-		GFF2021	0.57	+0.0
2,045,870	-		GFF2021	0.57	-0.4
2,045,875	-		GFF2021	0.57	-1.0
2,045,875	-		GFF2021	0.57	+0.4
2,045,875	-		GFF2021	0.57	-0.1
2,045,875	-		GFF2021	0.57	+0.5
2,045,875	-		GFF2021	0.57	-0.4
2,045,875	-		GFF2021	0.57	-0.4
2,045,875	-		GFF2021	0.57	-0.8
2,045,875	-		GFF2021	0.57	-0.1
2,045,875	-		GFF2021	0.57	+0.4
2,045,875	-		GFF2021	0.57	-0.3
2,045,875	-		GFF2021	0.57	+0.8
2,045,875	-		GFF2021	0.57	-0.1
2,045,875	-		GFF2021	0.57	-1.2
2,045,875	-		GFF2021	0.57	+0.1
2,045,875	-		GFF2021	0.57	-0.5
2,045,875	-		GFF2021	0.57	+0.2
2,045,875	-		GFF2021	0.57	-0.3
2,045,875	-		GFF2021	0.57	+0.4
2,045,881	+		GFF2021	0.58	+0.4
2,045,884	-		GFF2021	0.58	+0.3
2,045,889	-		GFF2021	0.59	+0.0
2,045,889	-		GFF2021	0.59	+0.1
2,045,891	+		GFF2021	0.59	-0.6
2,045,906	+		GFF2021	0.61	+1.5
2,045,914	-		GFF2021	0.62	+1.1
2,045,914	-		GFF2021	0.62	+0.5
2,045,914	-		GFF2021	0.62	+1.3
2,045,914	-		GFF2021	0.62	-0.3
2,045,916	+		GFF2021	0.62	+0.3
2,045,916	+		GFF2021	0.62	-1.6
2,045,936	-		GFF2021	0.64	+0.7
2,045,958	+		GFF2021	0.67	-0.4
2,045,958	+		GFF2021	0.67	-0.4
2,045,963	+		GFF2021	0.67	-0.8
2,045,964	+		GFF2021	0.67	-0.3
2,045,971	-		GFF2021	0.68	+1.3
2,045,973	+		GFF2021	0.69	-0.8
2,045,995	-		GFF2021	0.71	-1.0
2,046,002	+		GFF2021	0.72	-0.8
2,046,002	+		GFF2021	0.72	+0.7
2,046,009	-		GFF2021	0.73	+0.3
2,046,010	-		GFF2021	0.73	-1.6
2,046,021	+		GFF2021	0.74	-0.5
2,046,026	+		GFF2021	0.75	-0.5
2,046,034	-		GFF2021	0.76	-0.6
2,046,043	+		GFF2021	0.77	-2.0
2,046,051	-		GFF2021	0.78	-0.8
2,046,052	+		GFF2021	0.78	-1.4
2,046,058	-		GFF2021	0.78	-0.8
2,046,058	-		GFF2021	0.78	-1.0
2,046,063	+		GFF2021	0.79	-0.3
2,046,063	+		GFF2021	0.79	-0.5
2,046,063	+		GFF2021	0.79	+0.2
2,046,063	+		GFF2021	0.79	-0.3
2,046,063	+		GFF2021	0.79	+0.1
2,046,063	+		GFF2021	0.79	-0.5
2,046,071	-		GFF2021	0.80	-1.8
2,046,071	-		GFF2021	0.80	-1.1
2,046,086	+		GFF2021	0.82	+1.6
2,046,112	+		GFF2021	0.85	+0.1
2,046,121	-		GFF2021	0.86	+0.2
2,046,127	-		GFF2021	0.86	-0.1
2,046,135	-		GFF2021	0.87	+0.8
2,046,148	+		GFF2021	0.89	-1.2
2,046,199	-				+0.8
2,046,207	+				-0.6
2,046,211	+				-1.8
2,046,211	+				-2.2
2,046,214	-				+2.1
2,046,214	-				+1.3
2,046,219	-				-1.4
2,046,219	-				-0.4
2,046,219	-				+0.2
2,046,219	-				+0.4
2,046,219	-				+0.6
2,046,220	-				-0.3
2,046,243	+				+1.8
2,046,243	+				-0.9
2,046,243	+				+0.8
2,046,255	+				-0.5
2,046,255	+				+1.3
2,046,255	+				-1.6
2,046,263	-				+0.9
2,046,264	+				+0.7
2,046,274	+				-0.5
2,046,292	-				-2.0
2,046,329	+				+0.1
2,046,360	+				-0.1
2,046,362	+				-0.4
2,046,365	-				-2.2
2,046,370	-				+0.1
2,046,370	-				+0.4
2,046,385	+				-0.7
2,046,386	+				-0.2
2,046,390	+				-0.4
2,046,406	+				+0.2
2,046,408	-				+0.3
2,046,414	-				-0.5
2,046,414	-				-2.4
2,046,414	-				+1.1
2,046,424	-				+0.3
2,046,441	+				+2.0
2,046,441	+				+1.2
2,046,456	+				-1.5
2,046,458	-				-1.2
2,046,464	-				-0.5
2,046,464	-				-1.0
2,046,500	+				-0.1
2,046,500	+				+0.3
2,046,500	+				-0.5
2,046,500	+				+0.2
2,046,500	+				+0.7
2,046,508	-				-2.6
2,046,518	-				+0.0
2,046,539	+		GFF2022	0.15	+0.6
2,046,539	+		GFF2022	0.15	-0.4
2,046,539	+		GFF2022	0.15	-1.3
2,046,539	+		GFF2022	0.15	-0.7
2,046,544	+		GFF2022	0.18	+0.4
2,046,544	+		GFF2022	0.18	-0.3
2,046,547	-		GFF2022	0.19	+1.1
2,046,547	-		GFF2022	0.19	+0.6
2,046,547	-		GFF2022	0.19	-0.9
2,046,547	-		GFF2022	0.19	+0.1
2,046,547	-		GFF2022	0.19	+0.3
2,046,547	-		GFF2022	0.19	+0.0
2,046,547	-		GFF2022	0.19	-0.9
2,046,549	+		GFF2022	0.20	-1.3
2,046,549	+		GFF2022	0.20	-1.3
2,046,551	+		GFF2022	0.21	-1.5
2,046,551	+		GFF2022	0.21	-1.1
2,046,552	-		GFF2022	0.22	-0.1
2,046,557	-		GFF2022	0.24	-0.1
2,046,557	-		GFF2022	0.24	-2.9
2,046,559	+		GFF2022	0.25	-0.6
2,046,567	-		GFF2022	0.29	+0.8
2,046,569	+		GFF2022	0.30	-2.1
2,046,590	+		GFF2022	0.39	-1.0
2,046,590	+		GFF2022	0.39	+0.8
2,046,590	-		GFF2022	0.39	+0.3
2,046,628	-		GFF2022	0.57	-1.3
2,046,629	+		GFF2022	0.58	+0.5
2,046,630	+		GFF2022	0.58	-0.7
2,046,637	-		GFF2022	0.62	-1.9
2,046,647	+		GFF2022	0.66	-0.3
2,046,660	-		GFF2022	0.72	+0.6
2,046,664	+		GFF2022	0.74	+1.4
2,046,678	+		GFF2022	0.81	+0.5
2,046,683	+		GFF2022	0.83	+0.6
2,046,683	+		GFF2022	0.83	+0.8
2,046,695	+		GFF2022	0.89	+0.1
2,046,695	+		GFF2022	0.89	-0.4
2,046,695	+		GFF2022	0.89	-0.4
2,046,695	+		GFF2022	0.89	+0.6
2,046,695	+		GFF2022	0.89	+0.2
2,046,695	+		GFF2022	0.89	-0.2
2,046,695	+		GFF2022	0.89	-0.3
2,046,695	+		GFF2022	0.89	-1.3
2,046,695	+		GFF2022	0.89	+0.3
2,046,695	+		GFF2022	0.89	-2.2
2,046,695	+		GFF2022	0.89	-1.8
2,046,695	+		GFF2022	0.89	+0.6
2,046,695	+		GFF2022	0.89	+1.2
2,046,695	+		GFF2022	0.89	+0.2
2,046,695	+		GFF2022	0.89	-0.7
2,046,695	+		GFF2022	0.89	-1.2
2,046,695	+		GFF2022	0.89	+0.3
2,046,695	+		GFF2022	0.89	-0.4
2,046,703	-				-1.4
2,046,703	-				-0.4
2,046,703	-				-0.7
2,046,703	-				-0.2
2,046,703	-				+0.2
2,046,703	-				+0.2
2,046,703	-				-0.7
2,046,703	-				+1.4
2,046,703	-				+0.6
2,046,703	-				-2.2
2,046,703	-				+0.3
2,046,703	-				-0.5
2,046,703	-				+0.1
2,046,703	-				+0.4
2,046,703	-				-0.6
2,046,703	-				-1.7
2,046,703	-				+0.2
2,046,703	-				+1.6
2,046,703	-				+1.1
2,046,703	-				-1.5
2,046,703	-				-0.0
2,046,703	-				-1.9
2,046,703	-				-1.0
2,046,718	-				-2.1
2,046,718	-				+0.3
2,046,730	-				-0.2
2,046,732	+				+0.3
2,046,745	+				-1.5
2,046,753	-				-1.3
2,046,753	-				-0.4
2,046,753	-				+0.1
2,046,772	+				-0.5
2,046,772	+				-1.2
2,046,772	+				+0.2
2,046,772	+				-0.4
2,046,777	+				-0.4
2,046,780	-				-1.3
2,046,782	+				+0.4
2,046,788	-				+0.0
2,046,790	-				+0.0
2,046,846	-				+0.1
2,046,856	-				+0.4
2,046,905	+				-0.2
2,046,923	-				-2.0
2,046,933	-				+1.1
2,046,935	-				-0.1
2,046,949	+				+0.7
2,046,949	+				-1.5
2,046,955	-				-0.2
2,046,985	-				+1.2
2,046,999	-				-0.5
2,047,012	-				-0.5
2,047,027	+				-0.9
2,047,027	+				+1.2
2,047,027	+				-1.1
2,047,027	+				-1.0
2,047,032	+				+0.6
2,047,035	-				-1.1
2,047,035	-				+0.6
2,047,051	+				-1.9
2,047,051	+				+0.2
2,047,051	+				+0.4
2,047,051	+				+0.6
2,047,056	+				+0.2
2,047,056	+				-0.3
2,047,056	+				-0.9
2,047,059	-				+0.2
2,047,064	-				+0.3
2,047,064	-				-0.3
2,047,064	-				-0.2
2,047,064	-				-0.5
2,047,075	-				-0.0
2,047,106	+				-0.2
2,047,109	-				+0.2
2,047,157	-				-1.9
2,047,163	+				-0.4
2,047,163	+				-1.4
2,047,164	+				-1.1
2,047,164	+				-0.5
2,047,166	-				-0.3
2,047,167	-				-0.2
2,047,171	-				-0.0
2,047,221	-				-0.4
2,047,226	+				-0.3
2,047,226	+				-1.4
2,047,234	-				-0.8
2,047,234	-				+1.2
2,047,234	-				-0.5
2,047,239	-				-1.4
2,047,251	+				+0.4
2,047,251	+				+0.9
2,047,251	+				-0.4
2,047,251	+				+1.5
2,047,259	-				-1.7
2,047,259	-				+0.6
2,047,259	-				+1.5
2,047,288	+				-0.6
2,047,288	+				-2.3
2,047,288	+				-1.8
2,047,291	-				-0.6
2,047,293	+				-0.0
2,047,293	+				+0.4
2,047,296	-				-0.4
2,047,298	+				+0.2
2,047,298	+				-0.8
2,047,298	+				+0.8
2,047,301	-				-0.9
2,047,301	-				-0.2
2,047,306	-				-1.2
2,047,306	-				-1.0
2,047,306	-				+0.2
2,047,306	-				+0.7
2,047,311	-				-1.4
2,047,316	+				-0.2
2,047,316	+				-0.0
2,047,424	+				-1.6
2,047,424	+				-0.0
2,047,424	+				-0.3
2,047,432	-				+0.3
2,047,432	-				-1.2
2,047,432	-				+0.2
2,047,432	-				-1.2
2,047,518	-				+0.4
2,047,579	-		GFF2023	0.10	+0.2
2,047,588	+		GFF2023	0.11	-1.3
2,047,596	-		GFF2023	0.11	+0.5
2,047,607	+		GFF2023	0.11	-0.3
2,047,607	+		GFF2023	0.11	+1.9
2,047,646	-		GFF2023	0.13	-1.8
2,047,646	-		GFF2023	0.13	-0.5
2,047,646	-		GFF2023	0.13	-0.0
2,047,665	+		GFF2023	0.13	-0.5
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