Strain Fitness in Sphingobium sp. HT1-2 around GFF199

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
199,662	+		GFF198	0.30	-2.2
199,662	+		GFF198	0.30	-0.4
199,663	-		GFF198	0.31	-1.8
199,670	-		GFF198	0.34	+1.3
199,670	-		GFF198	0.34	+0.5
199,671	-		GFF198	0.35	-0.3
199,677	+		GFF198	0.38	-0.4
199,680	-		GFF198	0.40	+0.3
199,711	+		GFF198	0.56	-2.7
199,711	+		GFF198	0.56	+1.4
199,719	-		GFF198	0.60	-0.1
199,729	-		GFF198	0.66	-0.7
199,729	-		GFF198	0.66	-0.1
199,758	+		GFF198	0.81	-0.3
199,760	+		GFF198	0.82	-1.4
199,766	-		GFF198	0.85	-1.0
199,767	+		GFF198	0.86	+0.5
199,768	+		GFF198	0.86	-0.0
199,768	-		GFF198	0.86	+0.2
199,768	-		GFF198	0.86	+0.1
199,776	+				+0.7
199,786	-				+0.2
199,792	+				-0.3
199,792	+				-1.1
199,801	-				-0.6
199,815	+				-2.1
199,817	+				-1.3
199,817	+				-0.6
199,823	-				+1.1
199,823	-				+1.5
199,823	-				+1.1
199,823	-				-0.4
199,825	-				-2.0
199,836	-				-0.3
199,881	-				+0.2
199,891	-				-0.8
199,904	+				-1.6
199,997	+				+0.6
200,040	+				-0.9
200,053	+				-0.3
200,053	+				-1.9
200,071	+				-0.3
200,078	+				-0.8
200,079	-				-1.7
200,085	-				-0.8
200,089	+				+0.7
200,089	+				-0.7
200,089	+				-0.0
200,097	-				+0.9
200,097	-				-0.1
200,097	-				+1.0
200,097	-				+0.1
200,108	-				+1.0
200,110	+				-1.9
200,110	+				+0.4
200,118	-				+1.4
200,118	-				+0.4
200,118	-				-0.2
200,118	-				-1.0
200,163	+				+0.9
200,168	+				-0.9
200,168	+				+0.6
200,168	+				-0.1
200,168	+				-1.0
200,168	+				-1.1
200,176	-				+0.4
200,176	-				+0.1
200,176	-				-0.0
200,176	-				-0.7
200,181	-				+0.8
200,199	+				-0.1
200,199	+				+0.6
200,200	-				+0.9
200,205	+				+1.5
200,205	+				-0.1
200,207	-				-2.3
200,221	+				+0.1
200,221	+				-1.3
200,221	+				+0.2
200,227	+				-1.0
200,229	-				+0.2
200,229	-				-0.8
200,231	+				+0.1
200,232	+				-0.6
200,260	-				+0.4
200,267	-				-0.3
200,272	+				-0.4
200,272	+				+1.0
200,272	+				-0.2
200,272	+				+0.8
200,272	-				-1.9
200,278	-				+0.7
200,282	+				-0.3
200,285	+				-0.6
200,285	+				+0.5
200,287	+				-0.6
200,295	+				-1.2
200,295	+				+2.2
200,303	-				+1.0
200,303	-				-1.6
200,303	-				-0.4
200,303	-				+0.4
200,303	-				-1.1
200,321	-				-1.7
200,343	+				+0.3
200,346	+				-0.8
200,347	-				+0.9
200,361	+				-0.1
200,376	+				+0.4
200,376	+				+1.1
200,381	+				+1.2
200,384	-				-0.6
200,384	-				+0.7
200,389	-				-0.6
200,391	+				-0.8
200,401	+				+0.1
200,411	+				-2.1
200,416	+				-0.3
200,460	-				-1.2
200,473	+				-0.8
200,481	-				-0.2
200,481	-				-1.3
200,490	-				+1.4
200,499	-				+0.6
200,513	-				-0.4
200,538	+				-0.1
200,539	+				-0.6
200,547	-				+0.0
200,554	+				-2.2
200,562	-				-0.2
200,562	-				-0.3
200,616	+				+0.3
200,616	+				-1.0
200,616	+				-0.7
200,624	-				-2.0
200,629	-				-0.1
200,649	-				+0.1
200,651	+				-0.4
200,654	-				+0.5
200,661	+				+0.7
200,686	+				-0.3
200,686	+				-1.5
200,701	-				-0.1
200,701	-				-0.2
200,709	+				-0.4
200,720	-				+1.1
200,723	+				+0.8
200,723	+				-0.3
200,725	-				+0.4
200,728	+				+0.9
200,728	-				-0.1
200,731	-				-0.1
200,734	+				-1.1
200,736	-				-1.2
200,752	+		GFF199	0.11	-0.6
200,752	+		GFF199	0.11	-0.3
200,752	+		GFF199	0.11	+0.5
200,752	+		GFF199	0.11	+0.2
200,760	-		GFF199	0.12	-1.2
200,762	+		GFF199	0.12	-0.1
200,776	-		GFF199	0.13	-0.8
200,792	+		GFF199	0.15	+0.8
200,793	+		GFF199	0.15	-1.4
200,800	-		GFF199	0.16	-1.3
200,810	+		GFF199	0.17	-1.2
200,821	+		GFF199	0.18	-0.6
200,821	+		GFF199	0.18	-0.8
200,828	-		GFF199	0.19	+0.0
200,839	-		GFF199	0.20	-0.1
200,843	-		GFF199	0.21	-1.2
200,845	+		GFF199	0.21	-1.1
200,845	+		GFF199	0.21	+0.7
200,845	+		GFF199	0.21	+0.1
200,845	+		GFF199	0.21	-0.0
200,845	+		GFF199	0.21	+0.8
200,845	+		GFF199	0.21	-0.7
200,845	+		GFF199	0.21	+0.7
200,845	+		GFF199	0.21	+0.2
200,853	-		GFF199	0.22	-0.7
200,853	-		GFF199	0.22	-0.9
200,869	+		GFF199	0.24	+0.2
200,869	+		GFF199	0.24	+0.4
200,869	+		GFF199	0.24	-0.7
200,869	+		GFF199	0.24	-1.5
200,869	+		GFF199	0.24	-1.5
200,869	+		GFF199	0.24	-0.7
200,869	+		GFF199	0.24	-0.2
200,877	-		GFF199	0.24	-1.1
200,877	-		GFF199	0.24	+0.4
200,877	-		GFF199	0.24	+1.1
200,877	-		GFF199	0.24	-0.2
200,877	-		GFF199	0.24	-1.6
200,877	-		GFF199	0.24	+1.9
200,877	-		GFF199	0.24	-0.7
200,877	-		GFF199	0.24	+0.4
200,877	-		GFF199	0.24	-1.0
200,902	+		GFF199	0.27	-0.0
200,910	-		GFF199	0.28	+1.5
200,928	+		GFF199	0.30	-2.3
200,935	+		GFF199	0.31	-0.0
200,943	-		GFF199	0.32	-1.8
200,966	-		GFF199	0.34	+0.3
200,971	+		GFF199	0.35	-1.0
200,971	+		GFF199	0.35	-0.3
200,971	+		GFF199	0.35	-0.7
200,978	+		GFF199	0.36	+0.6
201,005	+		GFF199	0.39	+0.0
201,065	-		GFF199	0.45	+0.2
201,076	+		GFF199	0.46	-0.7
201,076	+		GFF199	0.46	-0.6
201,076	+		GFF199	0.46	-1.7
201,076	+		GFF199	0.46	-0.6
201,076	-		GFF199	0.46	-0.6
201,076	-		GFF199	0.46	-0.3
201,084	-		GFF199	0.47	-0.9
201,159	+		GFF199	0.55	+0.8
201,167	-		GFF199	0.56	-0.5
201,172	-		GFF199	0.57	-0.2
201,177	+		GFF199	0.57	-1.7
201,209	+		GFF199	0.61	-1.8
201,209	+		GFF199	0.61	-0.2
201,211	-		GFF199	0.61	-0.1
201,217	-		GFF199	0.62	-1.2
201,217	-		GFF199	0.62	+0.3
201,232	-		GFF199	0.63	-1.1
201,272	-		GFF199	0.68	+0.2
201,283	+		GFF199	0.69	+0.8
201,372	-		GFF199	0.79	-0.3
201,372	-		GFF199	0.79	-0.8
201,386	-		GFF199	0.80	-1.2
201,406	-		GFF199	0.83	+0.5
201,430	-		GFF199	0.85	-0.3
201,471	+		GFF199	0.90	-0.0
201,479	-				-0.1
201,514	-				-0.4
201,518	+				-0.6
201,526	-				+1.5
201,526	-				-0.2
201,526	-				-0.3
201,526	-				-0.1
201,526	-				-1.1
201,526	-				-0.8
201,526	-				-1.8
201,526	-				-1.4
201,539	+				-1.9
201,544	+				+0.8
201,547	-				-0.6
201,548	+				+0.1
201,552	-				+0.4
201,552	-				+1.1
201,552	-				+2.0
201,552	-				+1.1
201,552	-				-1.1
201,556	-				-1.8
201,557	-				+0.1
201,557	-				+0.4
201,559	+				-0.3
201,564	+				-0.5
201,564	+				+0.9
201,564	+				+0.8
201,567	-				-0.8
201,569	+				+0.3
201,571	+				+0.3
201,571	-				+0.2
201,572	-				-0.6
201,572	-				-0.2
201,572	-				+0.6
201,572	-				+0.1
201,572	-				+1.2
201,572	-				-0.9
201,572	-				-2.3
201,572	-				-0.3
201,572	-				-1.0
201,573	+				-1.9
201,579	-				+0.2
201,579	-				+1.1
201,581	-				+0.4
201,586	-				-2.0
201,605	+				+0.5
201,621	-				-0.2
201,623	+				+1.6
201,626	-				-0.3
201,628	+				+0.1
201,628	+				-0.2
201,628	+				+0.5
201,628	+				+0.3
201,628	+				-1.2
201,628	+				-0.4
201,628	+				+0.6
201,628	+				-0.6
201,628	+				-0.6
201,628	+				-0.8
201,628	+				+0.2
201,631	-				-0.2
201,636	-				+1.1
201,636	-				+0.2
201,636	-				-0.5
201,636	-				-0.6
201,636	-				+1.5
201,636	-				+0.3
201,636	-				+0.4
201,636	-				-1.2
201,636	-				-0.5
201,636	-				-0.2
201,636	-				-0.5
201,638	-				+0.7
201,664	+				+0.3
201,670	+				+1.7
201,670	+				-1.7
201,670	+				-0.1
201,670	+				-1.2
201,670	+				+0.3
201,678	-				+1.1
201,683	-				-1.1
201,683	-				-0.8
201,697	-				+0.1
201,702	-				+0.4
201,731	-				-1.1
201,741	-				-0.7
201,745	-				+0.4
201,745	-				-0.6
201,745	-				-0.5
201,745	-				+0.2
201,769	+				+0.5
201,769	+				+0.3
201,783	+				+0.4
201,783	+				+0.7
201,796	-				+0.4
201,801	-				-1.2
201,821	+		GFF200	0.11	-0.6
201,887	+		GFF200	0.22	+0.8
201,895	-		GFF200	0.23	-0.6
201,895	-		GFF200	0.23	-0.8
201,895	-		GFF200	0.23	-0.3
201,895	-		GFF200	0.23	+0.1
201,895	-		GFF200	0.23	-0.2
201,895	-		GFF200	0.23	-0.3
201,915	-		GFF200	0.27	-0.8
201,930	-		GFF200	0.29	-0.3
201,957	-		GFF200	0.33	+0.1
202,001	-		GFF200	0.41	-0.5
202,001	-		GFF200	0.41	-0.6
202,017	-		GFF200	0.43	-0.5
202,037	+		GFF200	0.47	-0.7
202,045	-		GFF200	0.48	+0.1
202,137	+		GFF200	0.63	-0.1
202,152	-		GFF200	0.66	+0.9
202,200	-		GFF200	0.73	-0.5
202,208	+		GFF200	0.75	+1.0
202,216	-		GFF200	0.76	-0.7
202,229	-		GFF200	0.78	-1.1
202,229	-		GFF200	0.78	+0.3
202,232	+		GFF200	0.79	-0.5
202,240	-		GFF200	0.80	+0.7
202,245	-		GFF200	0.81	+1.2
202,250	-		GFF200	0.82	+1.2
202,250	-		GFF200	0.82	-0.6
202,250	-		GFF200	0.82	-0.2
202,254	+		GFF200	0.82	+1.0
202,377	-				-0.9
202,380	-				+0.8
202,385	-				-2.4
202,405	+				+0.6
202,424	+				+0.6
202,432	-				+0.4
202,440	+				-1.1
202,440	+				+0.8
202,448	-				+0.5
202,448	-				+0.5
202,448	-				-1.1
202,500	-				+0.7
202,505	+				-0.2
202,505	+				-0.0
202,505	+				+0.5
202,508	+				+0.0
202,513	-				-0.8
202,513	-				+0.9
202,513	-				-0.7
202,527	+				-0.8
202,527	+				-2.0
202,527	+				-0.3
202,527	+				-0.1
202,527	+				-2.0
202,527	+				-0.9
202,535	-				-1.2
202,535	-				-1.3
202,535	-				+0.9
202,535	-				+0.8
202,535	-				+0.7
202,535	-				-0.2
202,535	-				+0.7
202,535	-				-0.6
202,544	-				-0.6
202,555	-				+1.4
202,555	-				-0.0
202,563	-				-0.2
202,563	-				-1.3
202,563	-				+0.6