Strain Fitness in Sphingobium sp. HT1-2 around GFF1988

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,009,625	-				+0.4
2,009,644	+				-0.2
2,009,686	-				-0.0
2,009,700	+				-0.3
2,009,700	+				-0.2
2,009,700	+				-0.4
2,009,700	+				-2.5
2,009,700	+				-1.2
2,009,700	+				-1.6
2,009,700	+				+0.3
2,009,708	-				-2.0
2,009,708	-				-0.0
2,009,708	-				-2.1
2,009,708	-				+0.3
2,009,708	-				-0.9
2,009,713	-				+0.0
2,009,727	-				-1.2
2,009,729	+				-0.5
2,009,737	-				+0.4
2,009,741	+				+0.2
2,009,763	+				+0.1
2,009,763	+				-0.6
2,009,771	-				+0.1
2,009,824	-				-1.4
2,009,839	+				-1.7
2,009,839	+				-0.3
2,009,839	+				+0.7
2,009,839	+				-0.0
2,009,840	+				+0.4
2,009,847	-		GFF1988	0.10	+0.7
2,009,852	-		GFF1988	0.11	+0.4
2,009,857	-		GFF1988	0.11	-0.6
2,009,858	+		GFF1988	0.11	-1.5
2,009,866	-		GFF1988	0.12	-0.2
2,009,916	-		GFF1988	0.16	-0.9
2,009,936	+		GFF1988	0.18	+0.4
2,009,944	-		GFF1988	0.19	-0.2
2,009,958	+		GFF1988	0.20	+0.2
2,009,969	+		GFF1988	0.21	-0.5
2,009,977	-		GFF1988	0.22	-0.8
2,009,979	-		GFF1988	0.22	-1.5
2,009,988	+		GFF1988	0.23	-0.4
2,009,988	+		GFF1988	0.23	+0.8
2,009,990	+		GFF1988	0.23	-2.2
2,009,990	+		GFF1988	0.23	-0.1
2,009,996	-		GFF1988	0.24	-1.4
2,009,998	-		GFF1988	0.24	+0.2
2,009,998	-		GFF1988	0.24	-1.1
2,010,008	+		GFF1988	0.25	+0.2
2,010,009	+		GFF1988	0.25	+1.3
2,010,014	+		GFF1988	0.25	+0.2
2,010,014	+		GFF1988	0.25	-1.9
2,010,014	+		GFF1988	0.25	-0.1
2,010,014	+		GFF1988	0.25	-0.2
2,010,014	+		GFF1988	0.25	-0.5
2,010,014	+		GFF1988	0.25	-0.4
2,010,014	+		GFF1988	0.25	+1.4
2,010,017	-		GFF1988	0.25	-2.7
2,010,022	-		GFF1988	0.26	-0.4
2,010,022	-		GFF1988	0.26	-0.2
2,010,022	-		GFF1988	0.26	+0.5
2,010,022	-		GFF1988	0.26	-1.5
2,010,022	-		GFF1988	0.26	-0.2
2,010,022	-		GFF1988	0.26	+0.2
2,010,022	-		GFF1988	0.26	-0.7
2,010,022	-		GFF1988	0.26	-1.0
2,010,043	-		GFF1988	0.28	-0.7
2,010,046	+		GFF1988	0.28	-1.0
2,010,084	-		GFF1988	0.31	-0.1
2,010,102	+		GFF1988	0.33	-0.7
2,010,102	+		GFF1988	0.33	+0.4
2,010,102	+		GFF1988	0.33	+1.1
2,010,102	+		GFF1988	0.33	+0.4
2,010,102	+		GFF1988	0.33	-0.8
2,010,102	+		GFF1988	0.33	-0.2
2,010,102	+		GFF1988	0.33	-1.4
2,010,110	-		GFF1988	0.34	-2.6
2,010,110	-		GFF1988	0.34	-1.5
2,010,110	-		GFF1988	0.34	-0.6
2,010,110	-		GFF1988	0.34	-1.1
2,010,110	-		GFF1988	0.34	+0.7
2,010,110	-		GFF1988	0.34	-0.5
2,010,158	+		GFF1988	0.38	-0.4
2,010,163	+		GFF1988	0.38	-1.1
2,010,166	-		GFF1988	0.39	-0.6
2,010,166	-		GFF1988	0.39	-1.5
2,010,166	-		GFF1988	0.39	-0.1
2,010,194	+		GFF1988	0.41	+0.8
2,010,195	+		GFF1988	0.41	-2.3
2,010,203	-		GFF1988	0.42	-0.5
2,010,210	+		GFF1988	0.43	-0.0
2,010,211	-		GFF1988	0.43	-0.2
2,010,241	+		GFF1988	0.45	+0.6
2,010,294	+		GFF1988	0.50	-0.3
2,010,317	-		GFF1988	0.52	+0.4
2,010,322	-		GFF1988	0.53	+0.4
2,010,359	+		GFF1988	0.56	-1.0
2,010,380	+		GFF1988	0.58	+0.8
2,010,380	+		GFF1988	0.58	+0.2
2,010,380	+		GFF1988	0.58	+0.9
2,010,380	+		GFF1988	0.58	-0.8
2,010,380	+		GFF1988	0.58	-0.8
2,010,380	+		GFF1988	0.58	+0.8
2,010,380	+		GFF1988	0.58	-1.0
2,010,388	-		GFF1988	0.58	+0.5
2,010,388	-		GFF1988	0.58	+0.9
2,010,388	-		GFF1988	0.58	+0.2
2,010,388	-		GFF1988	0.58	-1.5
2,010,388	-		GFF1988	0.58	+0.2
2,010,388	-		GFF1988	0.58	-0.0
2,010,388	-		GFF1988	0.58	+0.6
2,010,407	+		GFF1988	0.60	+0.2
2,010,415	-		GFF1988	0.61	+1.1
2,010,466	+		GFF1988	0.65	+0.1
2,010,533	-		GFF1988	0.71	-0.7
2,010,552	+		GFF1988	0.73	-1.7
2,010,552	+		GFF1988	0.73	+0.2
2,010,560	-		GFF1988	0.74	+1.2
2,010,563	+		GFF1988	0.74	-2.0
2,010,563	+		GFF1988	0.74	+0.5
2,010,568	+		GFF1988	0.74	-0.3
2,010,571	-		GFF1988	0.75	-1.2
2,010,571	-		GFF1988	0.75	+0.7
2,010,571	-		GFF1988	0.75	-1.1
2,010,576	-		GFF1988	0.75	+1.5
2,010,576	-		GFF1988	0.75	-0.5
2,010,580	+		GFF1988	0.75	-1.4
2,010,588	-		GFF1988	0.76	-0.1
2,010,609	+		GFF1988	0.78	-0.4
2,010,617	-		GFF1988	0.79	+0.6
2,010,617	-		GFF1988	0.79	+0.7
2,010,629	+		GFF1988	0.80	+0.5
2,010,633	-		GFF1988	0.80	-0.2
2,010,634	-		GFF1988	0.80	-2.4
2,010,646	+		GFF1988	0.81	-0.1
2,010,686	-		GFF1988	0.85	-1.8
2,010,690	+		GFF1988	0.85	+0.4
2,010,696	-		GFF1988	0.86	+0.9
2,010,733	+		GFF1988	0.89	+1.5
2,010,736	-		GFF1988	0.89	-0.2
2,010,742	-		GFF1988	0.90	-0.2
2,010,742	-		GFF1988	0.90	-0.5
2,010,759	-				-0.2
2,010,759	-				-1.3
2,010,764	+				-1.5
2,010,768	+				+0.6
2,010,779	+				+0.4
2,010,780	-				-1.3
2,010,787	-				-1.0
2,010,793	-				-0.0
2,010,805	-				-0.0
2,010,831	-				-1.6
2,010,833	+				-0.6
2,010,833	+				+0.7
2,010,838	+				-1.2
2,010,838	+				+0.3
2,010,841	-				-0.3
2,010,850	+				-0.0
2,010,850	+				-0.9
2,010,850	+				+0.5
2,010,850	+				-0.3
2,010,858	-				-0.1
2,010,858	-				-0.2
2,010,858	-				-1.6
2,010,858	-				+1.1
2,010,858	-				-0.5
2,010,858	-				-0.3
2,010,858	-				+1.5
2,010,858	-				+0.3
2,010,858	-				-0.2
2,010,858	-				-0.3
2,010,858	-				+0.1
2,010,866	+				-1.1
2,010,867	+				-2.2
2,010,889	-				-1.4
2,010,891	+				-0.8
2,010,899	-				-0.3
2,010,899	-				-0.4
2,010,904	-				-1.4
2,010,921	+				-0.1
2,010,939	-				-1.0
2,010,942	+				-0.2
2,010,942	+				-0.8
2,010,947	+				+0.1
2,010,952	+		GFF1989	0.10	-1.5
2,010,955	-		GFF1989	0.11	+0.0
2,010,976	-		GFF1989	0.14	+1.0
2,010,983	+		GFF1989	0.15	+1.0
2,010,983	+		GFF1989	0.15	+1.7
2,010,983	+		GFF1989	0.15	+0.0
2,010,983	+		GFF1989	0.15	+0.1
2,010,983	+		GFF1989	0.15	-1.2
2,010,983	+		GFF1989	0.15	-1.2
2,010,991	-		GFF1989	0.16	-2.1
2,010,991	-		GFF1989	0.16	-0.1
2,010,991	-		GFF1989	0.16	+1.2
2,010,996	-		GFF1989	0.17	+1.5
2,011,014	-		GFF1989	0.19	-0.8
2,011,032	+		GFF1989	0.22	+0.0
2,011,032	+		GFF1989	0.22	-0.9
2,011,035	-		GFF1989	0.22	-3.2
2,011,040	-		GFF1989	0.23	-0.0
2,011,040	-		GFF1989	0.23	+0.4
2,011,040	-		GFF1989	0.23	-0.2
2,011,100	-		GFF1989	0.32	-0.6
2,011,117	-		GFF1989	0.34	+0.6
2,011,127	-		GFF1989	0.36	-0.0
2,011,140	+		GFF1989	0.38	-1.8
2,011,158	-		GFF1989	0.40	+1.0
2,011,158	-		GFF1989	0.40	+0.4
2,011,158	-		GFF1989	0.40	-2.0
2,011,167	+		GFF1989	0.41	-0.4
2,011,192	-		GFF1989	0.45	+0.7
2,011,212	-		GFF1989	0.48	-3.0
2,011,212	-		GFF1989	0.48	-0.7
2,011,232	+		GFF1989	0.51	-0.8
2,011,232	+		GFF1989	0.51	+1.4
2,011,232	+		GFF1989	0.51	-0.6
2,011,232	+		GFF1989	0.51	+0.7
2,011,232	+		GFF1989	0.51	-2.3
2,011,232	+		GFF1989	0.51	+0.4
2,011,232	+		GFF1989	0.51	+0.9
2,011,232	+		GFF1989	0.51	-0.0
2,011,232	+		GFF1989	0.51	+0.8
2,011,232	+		GFF1989	0.51	-1.1
2,011,232	+		GFF1989	0.51	+1.3
2,011,235	-		GFF1989	0.51	-1.2
2,011,240	-		GFF1989	0.52	+0.7
2,011,240	-		GFF1989	0.52	+1.5
2,011,240	-		GFF1989	0.52	-0.9
2,011,240	-		GFF1989	0.52	-0.7
2,011,240	-		GFF1989	0.52	+0.0
2,011,240	-		GFF1989	0.52	+0.4
2,011,240	-		GFF1989	0.52	+0.4
2,011,278	-		GFF1989	0.57	+0.1
2,011,287	-		GFF1989	0.59	-0.1
2,011,308	-		GFF1989	0.62	-0.3
2,011,319	-		GFF1989	0.63	+0.4
2,011,330	+		GFF1989	0.65	-0.1
2,011,330	+		GFF1989	0.65	-1.4
2,011,330	+		GFF1989	0.65	+0.3
2,011,330	+		GFF1989	0.65	+0.6
2,011,333	-		GFF1989	0.65	-0.4
2,011,338	-		GFF1989	0.66	-1.5
2,011,338	-		GFF1989	0.66	+0.5
2,011,338	-		GFF1989	0.66	-1.5
2,011,338	-		GFF1989	0.66	+0.4
2,011,338	-		GFF1989	0.66	-0.9
2,011,338	-		GFF1989	0.66	-0.8
2,011,338	-		GFF1989	0.66	+0.2
2,011,338	-		GFF1989	0.66	-0.7
2,011,341	-		GFF1989	0.67	+1.1
2,011,346	+		GFF1989	0.67	+1.4
2,011,346	+		GFF1989	0.67	-0.8
2,011,354	-		GFF1989	0.68	+0.0
2,011,354	-		GFF1989	0.68	+0.2
2,011,354	-		GFF1989	0.68	-0.5
2,011,356	+		GFF1989	0.69	-0.5
2,011,356	+		GFF1989	0.69	+0.8
2,011,359	-		GFF1989	0.69	-0.8
2,011,364	-		GFF1989	0.70	-0.9
2,011,364	-		GFF1989	0.70	-1.3
2,011,364	-		GFF1989	0.70	+1.4
2,011,368	+		GFF1989	0.70	-0.1
2,011,373	+		GFF1989	0.71	-1.0
2,011,376	-		GFF1989	0.72	-0.3
2,011,376	-		GFF1989	0.72	-0.1
2,011,381	+		GFF1989	0.72	+0.6
2,011,399	+		GFF1989	0.75	-0.2
2,011,399	+		GFF1989	0.75	+0.2
2,011,413	-		GFF1989	0.77	-0.3
2,011,424	+		GFF1989	0.78	+0.7
2,011,461	+		GFF1989	0.84	-0.5
2,011,461	+		GFF1989	0.84	+1.1
2,011,469	-		GFF1989	0.85	+1.0
2,011,469	-		GFF1989	0.85	+0.2
2,011,471	+		GFF1989	0.85	-0.8
2,011,471	+		GFF1989	0.85	+0.5
2,011,471	+		GFF1989	0.85	-0.2
2,011,471	+		GFF1989	0.85	-0.6
2,011,471	+		GFF1989	0.85	-1.3
2,011,471	+		GFF1989	0.85	+0.1
2,011,471	+		GFF1989	0.85	+0.3
2,011,471	+		GFF1989	0.85	-2.7
2,011,479	-		GFF1989	0.86	-0.0
2,011,479	-		GFF1989	0.86	-0.2
2,011,479	-		GFF1989	0.86	-0.6
2,011,479	-		GFF1989	0.86	+0.6
2,011,479	-		GFF1989	0.86	+1.1
2,011,479	-		GFF1989	0.86	-0.0
2,011,479	-		GFF1989	0.86	-0.6
2,011,479	-		GFF1989	0.86	-0.7
2,011,479	-		GFF1989	0.86	+0.4
2,011,479	-		GFF1989	0.86	+1.0
2,011,479	-		GFF1989	0.86	-0.4
2,011,479	-		GFF1989	0.86	+0.5
2,011,479	-		GFF1989	0.86	+0.6
2,011,481	+		GFF1989	0.87	-3.1
2,011,481	+		GFF1989	0.87	-0.6
2,011,481	+		GFF1989	0.87	+0.4
2,011,481	+		GFF1989	0.87	+0.1
2,011,481	+		GFF1989	0.87	+0.5
2,011,481	+		GFF1989	0.87	+0.6
2,011,481	+		GFF1989	0.87	+0.5
2,011,481	+		GFF1989	0.87	-0.1
2,011,481	+		GFF1989	0.87	+0.8
2,011,481	+		GFF1989	0.87	-1.2
2,011,481	+		GFF1989	0.87	-1.2
2,011,481	+		GFF1989	0.87	+0.1
2,011,481	+		GFF1989	0.87	+0.9
2,011,489	-		GFF1989	0.88	+1.5
2,011,489	-		GFF1989	0.88	+0.3
2,011,489	-		GFF1989	0.88	-0.0
2,011,489	-		GFF1989	0.88	+0.5
2,011,489	-		GFF1989	0.88	+0.2
2,011,489	-		GFF1989	0.88	+0.3
2,011,489	-		GFF1989	0.88	+0.1
2,011,489	-		GFF1989	0.88	+0.4
2,011,489	-		GFF1989	0.88	-0.9
2,011,489	-		GFF1989	0.88	+0.1
2,011,489	-		GFF1989	0.88	-0.1
2,011,489	-		GFF1989	0.88	-0.5
2,011,489	-		GFF1989	0.88	+0.5
2,011,512	+				-0.5
2,011,540	+				-0.2
2,011,562	+				+0.2
2,011,589	-				-1.4
2,011,597	+				+0.3
2,011,597	+				-1.3
2,011,597	+				+0.7
2,011,605	-				-0.1
2,011,605	-				-0.5
2,011,605	-				-0.2
2,011,629	+				-1.0
2,011,637	-				-0.5
2,011,667	+				-0.5
2,011,667	+				-0.4
2,011,667	+				+1.0
2,011,675	-				-0.7
2,011,675	-				+0.1
2,011,675	-				-1.7
2,011,680	-				-0.2
2,011,693	-				+0.6
2,011,697	+				+0.5
2,011,711	+				-1.1
2,011,716	+				-0.5
2,011,742	-				-1.3
2,011,742	-				-2.4
2,011,759	+				+0.4
2,011,792	+				-1.2
2,011,792	-				-0.2
2,011,794	-				-0.4
2,011,801	+				+0.3
2,011,809	-				-0.0
2,011,819	-				-0.2
2,011,839	-				-2.1
2,011,840	-				+0.4
2,011,854	-				+1.2