Strain Fitness in Sphingobium sp. HT1-2 around GFF1975

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,997,037	+		GFF1972	0.68	-0.3
1,997,045	+		GFF1972	0.69	+0.4
1,997,045	+		GFF1972	0.69	-0.5
1,997,045	+		GFF1972	0.69	-2.0
1,997,045	+		GFF1972	0.69	-1.7
1,997,045	+		GFF1972	0.69	-1.3
1,997,045	+		GFF1972	0.69	-2.3
1,997,045	-		GFF1972	0.69	-3.0
1,997,053	-		GFF1972	0.70	-1.7
1,997,142	-		GFF1972	0.79	-1.7
1,997,147	+		GFF1972	0.80	-1.3
1,997,147	+		GFF1972	0.80	-1.7
1,997,147	+		GFF1972	0.80	-2.0
1,997,147	+		GFF1972	0.80	-2.1
1,997,152	+		GFF1972	0.80	-1.2
1,997,152	+		GFF1972	0.80	-1.9
1,997,155	-		GFF1972	0.80	-1.2
1,997,155	-		GFF1972	0.80	-0.5
1,997,179	+		GFF1972	0.83	-2.0
1,997,180	+		GFF1972	0.83	-1.5
1,997,190	+		GFF1972	0.84	-1.9
1,997,198	+		GFF1972	0.85	-1.3
1,997,198	-		GFF1972	0.85	-1.5
1,997,203	+		GFF1972	0.85	-1.4
1,997,203	+		GFF1972	0.85	-2.9
1,997,215	+		GFF1972	0.87	-2.5
1,997,215	+		GFF1972	0.87	-2.0
1,997,215	+		GFF1972	0.87	-2.2
1,997,215	+		GFF1972	0.87	-1.8
1,997,223	-		GFF1972	0.87	-1.5
1,997,235	-		GFF1972	0.89	-1.3
1,997,252	+				-2.6
1,997,260	-				-1.2
1,997,278	+				-2.3
1,997,287	+				-0.9
1,997,291	-				-2.4
1,997,292	+				-2.5
1,997,316	+				+0.1
1,997,324	+				-2.3
1,997,329	+				-1.0
1,997,339	+				-0.2
1,997,339	+				+0.7
1,997,342	-				-0.1
1,997,342	-				+0.0
1,997,347	-				-2.2
1,997,347	-				+0.2
1,997,347	-				-1.0
1,997,361	+				+0.4
1,997,361	+				-1.8
1,997,361	+				+1.0
1,997,369	-				-1.9
1,997,369	-				+0.7
1,997,369	-				-1.5
1,997,382	-				-1.4
1,997,390	+		GFF1973	0.11	-1.5
1,997,390	+		GFF1973	0.11	-0.5
1,997,395	+		GFF1973	0.12	-0.5
1,997,546	+		GFF1973	0.45	-0.2
1,997,614	+		GFF1973	0.61	+0.6
1,997,667	-		GFF1973	0.72	-1.3
1,997,669	+		GFF1973	0.73	-1.2
1,997,682	+		GFF1973	0.76	-1.2
1,997,687	+		GFF1973	0.77	-1.2
1,997,707	+		GFF1973	0.81	-0.2
1,997,708	+		GFF1973	0.82	-1.2
1,997,717	-		GFF1973	0.84	-1.3
1,997,752	-				-0.6
1,997,756	+				-1.2
1,997,756	+				+1.1
1,997,758	+				-0.4
1,997,759	-				-1.1
1,997,764	-				-2.1
1,997,769	+				+0.3
1,997,769	+				-0.7
1,997,769	+				+0.3
1,997,803	-				+0.5
1,997,819	+				-0.5
1,997,819	+				+0.2
1,997,838	+				-0.3
1,997,899	+		GFF1974	0.40	-0.2
1,997,900	-		GFF1974	0.41	+0.6
1,997,905	-		GFF1974	0.44	-0.8
1,997,906	+		GFF1974	0.44	-0.4
1,997,907	+		GFF1974	0.45	-0.4
1,997,907	-		GFF1974	0.45	-1.1
1,997,907	-		GFF1974	0.45	-2.2
1,997,907	-		GFF1974	0.45	-0.4
1,997,915	-		GFF1974	0.49	+0.5
1,997,919	+		GFF1974	0.51	-1.7
1,997,919	+		GFF1974	0.51	+0.3
1,997,970	+		GFF1974	0.80	+0.2
1,997,993	+				+1.2
1,998,001	-				-1.7
1,998,011	+				+0.5
1,998,011	+				+1.0
1,998,019	-				-0.8
1,998,019	-				+0.7
1,998,021	-				+0.8
1,998,028	+				-2.1
1,998,045	+				-1.7
1,998,088	-				+0.1
1,998,088	-				-0.4
1,998,093	-				-2.0
1,998,093	-				+1.4
1,998,093	-				+0.6
1,998,095	+				-1.6
1,998,095	+				-0.8
1,998,103	+				+0.0
1,998,103	-				+0.4
1,998,103	-				-1.4
1,998,105	-				-0.3
1,998,108	+				-0.0
1,998,108	+				-0.3
1,998,108	+				+1.0
1,998,108	+				-1.1
1,998,111	-				-0.3
1,998,116	-				-2.0
1,998,116	-				-0.5
1,998,116	-				-1.2
1,998,116	-				+0.4
1,998,135	+				-0.1
1,998,157	+		GFF1975	0.12	+1.0
1,998,176	+		GFF1975	0.14	-1.5
1,998,197	+		GFF1975	0.15	-0.1
1,998,198	+		GFF1975	0.16	-1.0
1,998,198	-		GFF1975	0.16	-0.4
1,998,205	-		GFF1975	0.16	+0.3
1,998,220	+		GFF1975	0.18	-2.3
1,998,230	+		GFF1975	0.18	-1.7
1,998,233	-		GFF1975	0.19	-0.6
1,998,233	-		GFF1975	0.19	+0.2
1,998,233	-		GFF1975	0.19	-0.4
1,998,235	+		GFF1975	0.19	+0.1
1,998,238	-		GFF1975	0.19	+1.0
1,998,238	-		GFF1975	0.19	-0.3
1,998,243	-		GFF1975	0.20	-0.6
1,998,290	-		GFF1975	0.24	-1.1
1,998,292	+		GFF1975	0.24	-0.0
1,998,319	-		GFF1975	0.27	-0.3
1,998,320	+		GFF1975	0.27	-1.0
1,998,348	-		GFF1975	0.29	-0.6
1,998,350	-		GFF1975	0.29	-1.3
1,998,374	+		GFF1975	0.32	-0.6
1,998,374	+		GFF1975	0.32	-2.0
1,998,374	+		GFF1975	0.32	-1.0
1,998,382	-		GFF1975	0.32	-0.8
1,998,420	+		GFF1975	0.36	-1.4
1,998,427	-		GFF1975	0.36	-1.7
1,998,433	-		GFF1975	0.37	+0.4
1,998,455	-		GFF1975	0.39	+0.2
1,998,467	+		GFF1975	0.40	+0.8
1,998,467	+		GFF1975	0.40	-1.1
1,998,475	-		GFF1975	0.41	-0.2
1,998,475	-		GFF1975	0.41	+1.3
1,998,477	-		GFF1975	0.41	-1.0
1,998,505	+		GFF1975	0.43	+0.4
1,998,513	+		GFF1975	0.44	-2.0
1,998,513	+		GFF1975	0.44	-1.2
1,998,513	+		GFF1975	0.44	-0.6
1,998,513	+		GFF1975	0.44	-0.8
1,998,513	-		GFF1975	0.44	+0.5
1,998,513	-		GFF1975	0.44	-0.1
1,998,513	-		GFF1975	0.44	-1.1
1,998,521	-		GFF1975	0.45	-0.3
1,998,521	-		GFF1975	0.45	-1.7
1,998,521	-		GFF1975	0.45	+0.1
1,998,521	-		GFF1975	0.45	-1.3
1,998,521	-		GFF1975	0.45	-0.1
1,998,526	-		GFF1975	0.45	-2.0
1,998,545	-		GFF1975	0.47	-0.4
1,998,552	+		GFF1975	0.48	-1.3
1,998,557	+		GFF1975	0.48	-2.8
1,998,560	-		GFF1975	0.48	-0.4
1,998,560	-		GFF1975	0.48	-1.2
1,998,588	-		GFF1975	0.51	+0.2
1,998,588	-		GFF1975	0.51	-0.7
1,998,598	-		GFF1975	0.52	-1.6
1,998,611	+		GFF1975	0.53	-3.0
1,998,611	+		GFF1975	0.53	-1.0
1,998,619	-		GFF1975	0.54	-0.2
1,998,624	-		GFF1975	0.54	-1.0
1,998,628	+		GFF1975	0.55	+0.2
1,998,628	+		GFF1975	0.55	+0.4
1,998,628	+		GFF1975	0.55	-0.1
1,998,636	-		GFF1975	0.55	-2.3
1,998,636	-		GFF1975	0.55	-1.2
1,998,636	-		GFF1975	0.55	-1.7
1,998,647	-		GFF1975	0.56	-1.5
1,998,647	-		GFF1975	0.56	-0.1
1,998,681	+		GFF1975	0.59	-1.8
1,998,681	+		GFF1975	0.59	-1.0
1,998,682	+		GFF1975	0.59	-0.0
1,998,687	+		GFF1975	0.60	+0.1
1,998,694	-		GFF1975	0.61	+1.1
1,998,694	-		GFF1975	0.61	-0.6
1,998,694	-		GFF1975	0.61	-0.2
1,998,695	-		GFF1975	0.61	-0.2
1,998,700	+		GFF1975	0.61	+1.4
1,998,706	+		GFF1975	0.62	-0.5
1,998,726	+		GFF1975	0.63	-0.5
1,998,737	+		GFF1975	0.64	-0.6
1,998,738	+		GFF1975	0.64	-1.2
1,998,740	-		GFF1975	0.65	+0.1
1,998,742	+		GFF1975	0.65	-1.0
1,998,742	+		GFF1975	0.65	+0.6
1,998,745	-		GFF1975	0.65	-0.5
1,998,745	-		GFF1975	0.65	-0.5
1,998,746	-		GFF1975	0.65	-2.0
1,998,749	+		GFF1975	0.65	-1.5
1,998,750	-		GFF1975	0.66	-1.0
1,998,752	-		GFF1975	0.66	-1.8
1,998,761	+		GFF1975	0.67	-1.4
1,998,761	+		GFF1975	0.67	+1.7
1,998,763	-		GFF1975	0.67	-1.3
1,998,769	-		GFF1975	0.67	-0.7
1,998,769	-		GFF1975	0.67	-0.8
1,998,769	-		GFF1975	0.67	-0.7
1,998,771	+		GFF1975	0.67	-0.8
1,998,776	+		GFF1975	0.68	-1.2
1,998,779	-		GFF1975	0.68	-1.2
1,998,823	+		GFF1975	0.72	-1.6
1,998,831	+		GFF1975	0.73	-1.0
1,998,841	-		GFF1975	0.74	-0.0
1,998,846	+		GFF1975	0.74	-0.8
1,998,847	-		GFF1975	0.74	-0.7
1,998,849	-		GFF1975	0.75	-0.3
1,998,854	-		GFF1975	0.75	-2.9
1,998,928	-		GFF1975	0.82	-0.4
1,998,928	-		GFF1975	0.82	+0.0
1,998,928	-		GFF1975	0.82	-0.8
1,998,963	-		GFF1975	0.85	-1.8
1,998,968	+		GFF1975	0.85	-0.3
1,999,014	-		GFF1975	0.89	-1.0
1,999,015	+		GFF1975	0.90	+0.8
1,999,020	+				-0.0
1,999,033	-				-0.2
1,999,033	-				-0.4
1,999,040	+				+0.9
1,999,048	-				-0.5
1,999,056	+				-1.3
1,999,064	-				-0.2
1,999,078	+				-1.4
1,999,086	-				-1.8
1,999,087	+				-0.4
1,999,087	-				-0.3
1,999,110	-				+0.4
1,999,119	+				-0.5
1,999,136	+				+0.2
1,999,144	-				-0.5
1,999,157	+				-0.3
1,999,178	-				-0.7
1,999,187	-				-1.5
1,999,208	-				-0.6
1,999,222	+		GFF1976	0.10	-1.9
1,999,222	-		GFF1976	0.10	-0.2
1,999,222	-		GFF1976	0.10	+0.2
1,999,230	+		GFF1976	0.11	+0.5
1,999,230	-		GFF1976	0.11	+0.4
1,999,240	+		GFF1976	0.12	-0.1
1,999,241	+		GFF1976	0.12	-0.8
1,999,244	-		GFF1976	0.12	+0.8
1,999,244	-		GFF1976	0.12	-0.6
1,999,259	-		GFF1976	0.14	+1.0
1,999,307	+		GFF1976	0.19	+0.5
1,999,307	+		GFF1976	0.19	-0.4
1,999,311	+		GFF1976	0.19	-2.0
1,999,315	-		GFF1976	0.20	-0.3
1,999,315	-		GFF1976	0.20	-0.9
1,999,315	-		GFF1976	0.20	-1.6
1,999,315	-		GFF1976	0.20	-0.6
1,999,340	+		GFF1976	0.22	-0.1
1,999,360	+		GFF1976	0.25	+0.2
1,999,361	-		GFF1976	0.25	-1.6
1,999,361	-		GFF1976	0.25	-0.1
1,999,375	-		GFF1976	0.26	+0.5
1,999,393	+		GFF1976	0.28	-1.0
1,999,401	-		GFF1976	0.29	+0.2
1,999,475	-		GFF1976	0.37	-2.1
1,999,478	+		GFF1976	0.37	+0.4
1,999,511	+		GFF1976	0.40	+0.8
1,999,513	+		GFF1976	0.41	+0.9
1,999,515	+		GFF1976	0.41	+0.3
1,999,517	+		GFF1976	0.41	+0.6
1,999,517	-		GFF1976	0.41	+0.8
1,999,521	+		GFF1976	0.41	-1.4
1,999,523	-		GFF1976	0.42	+0.1
1,999,526	+		GFF1976	0.42	+1.5
1,999,526	+		GFF1976	0.42	-0.1
1,999,526	+		GFF1976	0.42	-1.1
1,999,526	+		GFF1976	0.42	+1.3
1,999,534	-		GFF1976	0.43	+0.1
1,999,534	-		GFF1976	0.43	-0.2
1,999,561	+		GFF1976	0.46	+0.5
1,999,563	+		GFF1976	0.46	-1.4
1,999,569	-		GFF1976	0.46	-0.5
1,999,571	-		GFF1976	0.47	+1.1
1,999,581	+		GFF1976	0.48	-0.8
1,999,589	-		GFF1976	0.49	-0.8
1,999,589	-		GFF1976	0.49	+0.0
1,999,599	-		GFF1976	0.50	-0.0
1,999,602	-		GFF1976	0.50	+2.5
1,999,604	+		GFF1976	0.50	-1.0
1,999,612	-		GFF1976	0.51	+0.2
1,999,655	+		GFF1976	0.55	-1.7
1,999,661	+		GFF1976	0.56	-0.7
1,999,683	+		GFF1976	0.58	-0.6
1,999,683	+		GFF1976	0.58	-0.5
1,999,683	+		GFF1976	0.58	-1.5
1,999,683	+		GFF1976	0.58	+0.9
1,999,691	-		GFF1976	0.59	+0.0
1,999,691	-		GFF1976	0.59	+0.8
1,999,691	-		GFF1976	0.59	+0.3
1,999,691	-		GFF1976	0.59	-0.2
1,999,694	+		GFF1976	0.60	-0.1
1,999,694	+		GFF1976	0.60	-0.0
1,999,694	+		GFF1976	0.60	+0.2
1,999,694	+		GFF1976	0.60	+0.9
1,999,694	+		GFF1976	0.60	-1.7
1,999,700	+		GFF1976	0.60	+0.3
1,999,700	-		GFF1976	0.60	-1.0
1,999,708	-		GFF1976	0.61	-0.2
1,999,716	+		GFF1976	0.62	+0.9
1,999,716	+		GFF1976	0.62	-0.2
1,999,716	+		GFF1976	0.62	-0.1
1,999,716	+		GFF1976	0.62	+0.8
1,999,718	-		GFF1976	0.62	-0.4
1,999,724	+		GFF1976	0.63	+0.1
1,999,724	+		GFF1976	0.63	+0.4
1,999,724	+		GFF1976	0.63	-1.4
1,999,724	-		GFF1976	0.63	-0.1
1,999,726	+		GFF1976	0.63	-0.5
1,999,730	-		GFF1976	0.63	+0.3
1,999,732	-		GFF1976	0.64	-1.3
1,999,732	-		GFF1976	0.64	-0.1
1,999,732	-		GFF1976	0.64	+0.5
1,999,732	-		GFF1976	0.64	-2.0
1,999,734	-		GFF1976	0.64	-0.4
1,999,821	+		GFF1976	0.73	-0.5
1,999,829	+		GFF1976	0.74	-0.1
1,999,832	-		GFF1976	0.74	+1.5
1,999,839	+		GFF1976	0.75	-0.3
1,999,847	-		GFF1976	0.76	-0.6
1,999,847	-		GFF1976	0.76	+0.1
1,999,848	+		GFF1976	0.76	-1.6
1,999,848	+		GFF1976	0.76	-0.6
1,999,856	-		GFF1976	0.77	-0.2
1,999,856	-		GFF1976	0.77	+0.3
1,999,856	-		GFF1976	0.77	+0.4
1,999,856	-		GFF1976	0.77	-0.6
1,999,861	-		GFF1976	0.77	+0.3
1,999,865	+		GFF1976	0.77	+0.5
1,999,865	+		GFF1976	0.77	-0.7
1,999,866	-		GFF1976	0.78	+0.5
1,999,871	-		GFF1976	0.78	+1.1
1,999,873	-		GFF1976	0.78	-0.4
1,999,873	-		GFF1976	0.78	-1.4
1,999,873	-		GFF1976	0.78	+0.1
1,999,878	+		GFF1976	0.79	-1.3
1,999,878	-		GFF1976	0.79	-0.1
1,999,878	-		GFF1976	0.79	+0.3
1,999,891	-		GFF1976	0.80	+0.4
1,999,896	+		GFF1976	0.81	+0.2
1,999,943	-		GFF1976	0.86	-0.5
1,999,988	-				+0.6
1,999,998	-				-0.4
2,000,024	+				-0.4
2,000,032	-				-1.7
2,000,032	-				-0.8
2,000,043	+				-2.2
2,000,043	+				-0.4
2,000,051	-				-1.3
2,000,051	-				-0.3
2,000,088	-				+0.2
2,000,094	-				+0.8
2,000,103	+				+0.8
2,000,103	+				-0.9
2,000,111	+				+0.8
2,000,111	-				-1.3
2,000,111	-				-1.4
2,000,111	-				+0.3
2,000,117	+				+0.7
2,000,118	+				-0.6