Strain Fitness in Sphingobium sp. HT1-2 around GFF1967

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,989,993	-		GFF1965	0.70	-1.3
1,990,012	-		GFF1965	0.73	+0.4
1,990,021	+		GFF1965	0.75	-0.2
1,990,021	+		GFF1965	0.75	-0.0
1,990,021	+		GFF1965	0.75	-0.0
1,990,021	+		GFF1965	0.75	-1.9
1,990,029	-		GFF1965	0.76	-0.3
1,990,029	-		GFF1965	0.76	+0.0
1,990,029	-		GFF1965	0.76	-1.1
1,990,029	-		GFF1965	0.76	+0.5
1,990,029	-		GFF1965	0.76	+0.4
1,990,029	-		GFF1965	0.76	-1.4
1,990,029	-		GFF1965	0.76	+0.4
1,990,029	-		GFF1965	0.76	-0.0
1,990,044	-		GFF1965	0.79	-0.2
1,990,044	-		GFF1965	0.79	+0.0
1,990,058	+		GFF1965	0.81	-0.3
1,990,058	+		GFF1965	0.81	+1.6
1,990,058	+		GFF1965	0.81	-2.5
1,990,061	-		GFF1965	0.82	-0.3
1,990,061	-		GFF1965	0.82	-1.5
1,990,066	-		GFF1965	0.82	+0.5
1,990,066	-		GFF1965	0.82	+0.1
1,990,109	+		GFF1965	0.90	-1.5
1,990,119	+				-2.7
1,990,159	+				-1.2
1,990,159	+				-1.4
1,990,177	+				-0.0
1,990,177	+				-0.0
1,990,188	+				+0.5
1,990,196	-				-1.9
1,990,237	+				+0.3
1,990,237	+				-0.9
1,990,237	+				+0.8
1,990,237	+				-1.6
1,990,237	+				-0.4
1,990,237	+				+1.0
1,990,237	+				-2.1
1,990,245	-		GFF1966	0.10	+0.3
1,990,245	-		GFF1966	0.10	-0.9
1,990,253	+		GFF1966	0.11	+0.5
1,990,256	-		GFF1966	0.11	-0.6
1,990,265	-		GFF1966	0.13	+0.3
1,990,265	-		GFF1966	0.13	+1.0
1,990,265	-		GFF1966	0.13	+0.3
1,990,265	-		GFF1966	0.13	-0.2
1,990,265	-		GFF1966	0.13	-0.2
1,990,287	+		GFF1966	0.15	+1.7
1,990,287	-		GFF1966	0.15	+0.5
1,990,292	+		GFF1966	0.16	+1.3
1,990,295	-		GFF1966	0.16	+0.1
1,990,295	-		GFF1966	0.16	+0.0
1,990,322	-		GFF1966	0.20	-0.3
1,990,358	+		GFF1966	0.25	+0.3
1,990,361	-		GFF1966	0.25	-1.9
1,990,366	-		GFF1966	0.26	-1.2
1,990,366	-		GFF1966	0.26	-0.6
1,990,368	+		GFF1966	0.26	+0.6
1,990,376	-		GFF1966	0.27	+1.7
1,990,376	-		GFF1966	0.27	+0.8
1,990,388	-		GFF1966	0.28	-0.9
1,990,398	+		GFF1966	0.30	-2.4
1,990,398	+		GFF1966	0.30	-0.1
1,990,398	+		GFF1966	0.30	+0.5
1,990,409	+		GFF1966	0.31	+1.5
1,990,409	+		GFF1966	0.31	+0.9
1,990,410	+		GFF1966	0.31	+0.2
1,990,439	-		GFF1966	0.35	+0.9
1,990,444	-		GFF1966	0.36	-2.4
1,990,444	-		GFF1966	0.36	+0.5
1,990,463	+		GFF1966	0.38	-1.9
1,990,463	+		GFF1966	0.38	-1.0
1,990,463	+		GFF1966	0.38	-1.5
1,990,463	+		GFF1966	0.38	-0.2
1,990,463	+		GFF1966	0.38	-2.6
1,990,463	+		GFF1966	0.38	+1.0
1,990,471	-		GFF1966	0.39	-0.8
1,990,471	-		GFF1966	0.39	-1.1
1,990,471	-		GFF1966	0.39	-0.5
1,990,471	-		GFF1966	0.39	-0.3
1,990,476	+		GFF1966	0.40	+0.1
1,990,476	-		GFF1966	0.40	-0.3
1,990,484	-		GFF1966	0.41	-1.1
1,990,508	-		GFF1966	0.44	-0.0
1,990,508	-		GFF1966	0.44	+0.3
1,990,508	-		GFF1966	0.44	+0.0
1,990,513	-		GFF1966	0.44	-0.2
1,990,526	+		GFF1966	0.46	+1.1
1,990,526	+		GFF1966	0.46	-1.8
1,990,526	+		GFF1966	0.46	-0.7
1,990,526	+		GFF1966	0.46	-0.7
1,990,534	-		GFF1966	0.47	+1.1
1,990,534	-		GFF1966	0.47	-0.4
1,990,534	-		GFF1966	0.47	+0.6
1,990,547	-		GFF1966	0.49	-1.2
1,990,550	+		GFF1966	0.49	+0.1
1,990,558	-		GFF1966	0.50	+0.4
1,990,566	-		GFF1966	0.51	-1.3
1,990,581	+		GFF1966	0.53	+0.0
1,990,583	+		GFF1966	0.53	-0.1
1,990,591	-		GFF1966	0.54	+0.8
1,990,645	+		GFF1966	0.61	+0.0
1,990,659	+		GFF1966	0.63	-2.2
1,990,659	+		GFF1966	0.63	+0.1
1,990,662	-		GFF1966	0.63	+0.6
1,990,662	-		GFF1966	0.63	-0.9
1,990,665	+		GFF1966	0.64	-1.8
1,990,675	+		GFF1966	0.65	+1.0
1,990,688	-		GFF1966	0.67	-0.3
1,990,689	-		GFF1966	0.67	-1.2
1,990,719	-		GFF1966	0.71	-1.4
1,990,719	-		GFF1966	0.71	-0.2
1,990,732	+		GFF1966	0.72	-1.4
1,990,739	+		GFF1966	0.73	+0.2
1,990,773	+		GFF1966	0.78	-1.6
1,990,781	-		GFF1966	0.79	+0.0
1,990,782	-		GFF1966	0.79	-1.4
1,990,787	-		GFF1966	0.79	+0.2
1,990,836	-		GFF1966	0.86	+0.4
1,990,836	-		GFF1966	0.86	-0.4
1,990,836	-		GFF1966	0.86	+0.4
1,990,858	+		GFF1966	0.88	+1.0
1,990,872	-				-1.6
1,990,884	-				-0.0
1,990,898	+				-0.4
1,990,899	+				-1.7
1,990,899	+				-0.3
1,990,899	+				+0.8
1,990,899	+				+0.6
1,990,903	+				+1.1
1,990,906	-				-0.5
1,990,907	-				-0.2
1,990,907	-				-0.5
1,990,929	+				-1.5
1,990,964	+				+0.7
1,990,969	+				-0.3
1,990,977	-				-0.5
1,990,977	-				-0.9
1,991,013	-				+0.3
1,991,048	-				+0.3
1,991,063	+				+0.1
1,991,063	+				-1.7
1,991,124	-		GFF1967	0.16	+0.4
1,991,130	+		GFF1967	0.16	+0.9
1,991,143	-		GFF1967	0.18	-0.0
1,991,162	+		GFF1967	0.19	+1.4
1,991,170	-		GFF1967	0.20	+0.9
1,991,170	-		GFF1967	0.20	-1.3
1,991,208	-		GFF1967	0.24	+0.5
1,991,216	-		GFF1967	0.25	+0.9
1,991,238	-		GFF1967	0.27	-1.4
1,991,242	+		GFF1967	0.27	+0.9
1,991,286	+		GFF1967	0.32	-0.5
1,991,294	-		GFF1967	0.32	+0.1
1,991,311	+		GFF1967	0.34	-0.8
1,991,321	+		GFF1967	0.35	-1.2
1,991,321	+		GFF1967	0.35	-0.1
1,991,321	+		GFF1967	0.35	-2.4
1,991,321	+		GFF1967	0.35	-1.5
1,991,321	+		GFF1967	0.35	-0.5
1,991,321	+		GFF1967	0.35	-0.9
1,991,321	+		GFF1967	0.35	-0.2
1,991,321	+		GFF1967	0.35	-0.7
1,991,321	+		GFF1967	0.35	+0.6
1,991,321	+		GFF1967	0.35	-0.3
1,991,321	+		GFF1967	0.35	-1.0
1,991,329	-		GFF1967	0.36	+0.3
1,991,329	-		GFF1967	0.36	+0.1
1,991,329	-		GFF1967	0.36	-2.6
1,991,329	-		GFF1967	0.36	-1.5
1,991,329	-		GFF1967	0.36	+1.1
1,991,329	-		GFF1967	0.36	-0.4
1,991,329	-		GFF1967	0.36	-1.0
1,991,329	-		GFF1967	0.36	-1.5
1,991,331	-		GFF1967	0.36	+0.3
1,991,331	-		GFF1967	0.36	-0.1
1,991,347	-		GFF1967	0.38	-0.9
1,991,362	-		GFF1967	0.39	+0.1
1,991,364	-		GFF1967	0.39	+1.1
1,991,379	-		GFF1967	0.41	-2.1
1,991,395	-		GFF1967	0.42	-1.1
1,991,432	-		GFF1967	0.46	-0.9
1,991,432	-		GFF1967	0.46	-0.1
1,991,435	+		GFF1967	0.46	+0.9
1,991,462	+		GFF1967	0.49	-0.3
1,991,462	+		GFF1967	0.49	-0.5
1,991,462	+		GFF1967	0.49	-1.3
1,991,462	+		GFF1967	0.49	-0.3
1,991,468	+		GFF1967	0.50	+0.1
1,991,479	+		GFF1967	0.51	-1.6
1,991,487	-		GFF1967	0.52	-0.2
1,991,492	+		GFF1967	0.52	+0.2
1,991,497	+		GFF1967	0.53	-0.7
1,991,615	+		GFF1967	0.64	+1.5
1,991,627	+		GFF1967	0.65	-2.5
1,991,627	+		GFF1967	0.65	-0.5
1,991,659	-		GFF1967	0.69	-0.7
1,991,676	-		GFF1967	0.70	+0.8
1,991,687	+		GFF1967	0.71	-1.8
1,991,692	+		GFF1967	0.72	-0.9
1,991,692	+		GFF1967	0.72	-0.8
1,991,697	+		GFF1967	0.72	+0.8
1,991,716	+		GFF1967	0.74	-1.4
1,991,724	-		GFF1967	0.75	-1.9
1,991,724	-		GFF1967	0.75	+0.6
1,991,739	+		GFF1967	0.76	+0.2
1,991,752	-		GFF1967	0.78	-2.2
1,991,790	-		GFF1967	0.82	-0.5
1,991,792	+		GFF1967	0.82	-0.6
1,991,792	-		GFF1967	0.82	-0.7
1,991,809	+		GFF1967	0.83	+0.0
1,991,813	+		GFF1967	0.84	-0.8
1,991,815	+		GFF1967	0.84	-1.9
1,991,840	-		GFF1967	0.86	-0.6
1,991,846	+		GFF1967	0.87	-2.1
1,991,854	-		GFF1967	0.88	-0.1
1,991,854	-		GFF1967	0.88	-0.3
1,991,854	-		GFF1967	0.88	-1.4
1,991,854	-		GFF1967	0.88	-1.6
1,991,854	-		GFF1967	0.88	-0.3
1,991,894	-				+0.5
1,991,894	-				-0.3
1,991,894	-				-1.6
1,991,936	-				-0.4
1,991,958	-				-2.5
1,991,987	-				+1.1
1,991,998	+				+0.1
1,991,998	+				-1.0
1,992,008	+				-0.2
1,992,008	+				+0.7
1,992,008	+				+1.7
1,992,016	-				-0.2
1,992,016	-				-2.6
1,992,023	-				-0.8
1,992,025	+				-1.5
1,992,031	-				-2.4
1,992,033	-				-0.6
1,992,033	-				+0.3
1,992,110	-		GFF1968	0.11	-1.3
1,992,208	-		GFF1968	0.24	+0.3
1,992,277	+		GFF1968	0.34	+0.4
1,992,294	+		GFF1968	0.36	-1.2
1,992,297	-		GFF1968	0.37	+1.3
1,992,302	-		GFF1968	0.38	-0.6
1,992,302	-		GFF1968	0.38	-0.1
1,992,302	-		GFF1968	0.38	-1.8
1,992,314	-		GFF1968	0.39	+0.4
1,992,695	-				-0.8
1,992,706	-				-0.5
1,992,741	+				+0.4
1,992,743	-				+0.5
1,992,762	+				-0.3
1,992,769	+				+0.9
1,992,770	-				-1.7
1,992,770	-				+0.3