Strain Fitness in Sphingobium sp. HT1-2 around GFF1933

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,957,022	+		GFF1932	0.57	+0.4
1,957,023	-		GFF1932	0.57	+0.3
1,957,030	-		GFF1932	0.58	+0.1
1,957,049	+		GFF1932	0.58	-0.6
1,957,079	+		GFF1932	0.60	+0.0
1,957,084	-		GFF1932	0.60	-0.8
1,957,098	+		GFF1932	0.60	-0.9
1,957,106	-		GFF1932	0.61	+0.3
1,957,106	-		GFF1932	0.61	+0.3
1,957,106	-		GFF1932	0.61	-0.1
1,957,110	+		GFF1932	0.61	+0.2
1,957,113	-		GFF1932	0.61	-0.2
1,957,118	+		GFF1932	0.61	+0.9
1,957,118	-		GFF1932	0.61	-0.5
1,957,171	+		GFF1932	0.64	+0.8
1,957,171	+		GFF1932	0.64	-0.8
1,957,212	+		GFF1932	0.65	+0.8
1,957,218	-		GFF1932	0.66	-0.7
1,957,220	+		GFF1932	0.66	-1.1
1,957,220	+		GFF1932	0.66	+0.3
1,957,228	-		GFF1932	0.66	+1.1
1,957,228	-		GFF1932	0.66	-1.2
1,957,228	-		GFF1932	0.66	+0.4
1,957,273	+		GFF1932	0.68	+0.6
1,957,285	-		GFF1932	0.69	-0.8
1,957,285	-		GFF1932	0.69	-1.0
1,957,306	-		GFF1932	0.69	-0.1
1,957,320	+		GFF1932	0.70	-0.6
1,957,320	+		GFF1932	0.70	+0.8
1,957,320	+		GFF1932	0.70	+1.4
1,957,328	-		GFF1932	0.70	+0.3
1,957,328	-		GFF1932	0.70	+0.1
1,957,328	-		GFF1932	0.70	-0.5
1,957,353	+		GFF1932	0.71	-0.0
1,957,356	+		GFF1932	0.72	-0.4
1,957,356	+		GFF1932	0.72	-0.3
1,957,356	+		GFF1932	0.72	+0.5
1,957,361	-		GFF1932	0.72	-1.5
1,957,361	-		GFF1932	0.72	-1.5
1,957,361	-		GFF1932	0.72	-2.3
1,957,363	+		GFF1932	0.72	-0.6
1,957,371	-		GFF1932	0.72	+0.1
1,957,371	-		GFF1932	0.72	+0.2
1,957,371	-		GFF1932	0.72	+0.3
1,957,386	+		GFF1932	0.73	-0.5
1,957,386	+		GFF1932	0.73	-0.2
1,957,413	-		GFF1932	0.74	-0.3
1,957,413	-		GFF1932	0.74	-0.7
1,957,431	-		GFF1932	0.75	+0.6
1,957,520	-		GFF1932	0.79	-2.2
1,957,544	+		GFF1932	0.80	+0.6
1,957,550	-		GFF1932	0.80	-2.8
1,957,552	-		GFF1932	0.80	+1.1
1,957,571	+		GFF1932	0.81	-0.3
1,957,571	+		GFF1932	0.81	+0.7
1,957,571	+		GFF1932	0.81	+1.5
1,957,571	+		GFF1932	0.81	+0.3
1,957,579	-		GFF1932	0.81	+0.4
1,957,579	-		GFF1932	0.81	+1.2
1,957,581	+		GFF1932	0.81	-2.0
1,957,581	+		GFF1932	0.81	+1.0
1,957,581	+		GFF1932	0.81	-1.4
1,957,581	-		GFF1932	0.81	+0.1
1,957,586	+		GFF1932	0.81	-0.0
1,957,586	+		GFF1932	0.81	-1.1
1,957,589	-		GFF1932	0.82	-0.2
1,957,589	-		GFF1932	0.82	-0.2
1,957,591	+		GFF1932	0.82	-0.9
1,957,599	-		GFF1932	0.82	-0.2
1,957,599	-		GFF1932	0.82	-2.0
1,957,610	-		GFF1932	0.82	-1.2
1,957,610	-		GFF1932	0.82	+0.2
1,957,610	-		GFF1932	0.82	-0.5
1,957,611	+		GFF1932	0.83	+1.1
1,957,611	+		GFF1932	0.83	+0.1
1,957,615	+		GFF1932	0.83	+1.4
1,957,636	+		GFF1932	0.84	+0.5
1,957,636	+		GFF1932	0.84	+0.4
1,957,636	+		GFF1932	0.84	+0.3
1,957,636	+		GFF1932	0.84	+0.9
1,957,636	+		GFF1932	0.84	+0.6
1,957,636	+		GFF1932	0.84	-1.9
1,957,636	+		GFF1932	0.84	+0.8
1,957,636	+		GFF1932	0.84	+1.4
1,957,636	+		GFF1932	0.84	+0.1
1,957,636	+		GFF1932	0.84	+0.7
1,957,636	+		GFF1932	0.84	-0.1
1,957,636	+		GFF1932	0.84	-0.2
1,957,636	+		GFF1932	0.84	+0.1
1,957,636	+		GFF1932	0.84	-0.2
1,957,636	+		GFF1932	0.84	+0.1
1,957,636	+		GFF1932	0.84	-0.8
1,957,636	+		GFF1932	0.84	+0.7
1,957,636	+		GFF1932	0.84	+0.1
1,957,636	+		GFF1932	0.84	-0.2
1,957,642	+		GFF1932	0.84	-0.8
1,957,644	-		GFF1932	0.84	-0.7
1,957,644	-		GFF1932	0.84	-2.5
1,957,644	-		GFF1932	0.84	+0.4
1,957,644	-		GFF1932	0.84	+0.2
1,957,644	-		GFF1932	0.84	+0.9
1,957,644	-		GFF1932	0.84	+1.0
1,957,644	-		GFF1932	0.84	+1.1
1,957,644	-		GFF1932	0.84	+0.9
1,957,644	-		GFF1932	0.84	-0.7
1,957,644	-		GFF1932	0.84	+0.7
1,957,644	-		GFF1932	0.84	-1.3
1,957,644	-		GFF1932	0.84	+0.2
1,957,644	-		GFF1932	0.84	+0.2
1,957,644	-		GFF1932	0.84	-0.3
1,957,644	-		GFF1932	0.84	+0.4
1,957,644	-		GFF1932	0.84	-0.5
1,957,644	-		GFF1932	0.84	+0.7
1,957,644	-		GFF1932	0.84	-1.4
1,957,644	-		GFF1932	0.84	-0.7
1,957,644	-		GFF1932	0.84	+0.4
1,957,644	-		GFF1932	0.84	+0.7
1,957,644	-		GFF1932	0.84	-1.5
1,957,647	+		GFF1932	0.84	+1.4
1,957,650	-		GFF1932	0.84	-0.8
1,957,685	+		GFF1932	0.86	+0.5
1,957,708	-		GFF1932	0.87	-0.6
1,957,717	-		GFF1932	0.87	-0.6
1,957,717	-		GFF1932	0.87	+0.1
1,957,717	-		GFF1932	0.87	+0.2
1,957,725	-		GFF1932	0.87	-2.5
1,957,725	-		GFF1932	0.87	-1.8
1,957,738	-		GFF1932	0.88	-0.3
1,957,748	-		GFF1932	0.88	+0.4
1,957,748	-		GFF1932	0.88	-1.2
1,957,764	+		GFF1932	0.89	-1.9
1,957,764	+		GFF1932	0.89	-1.2
1,957,772	-		GFF1932	0.89	+0.5
1,957,774	-		GFF1932	0.90	+0.8
1,957,775	+		GFF1932	0.90	+0.4
1,957,781	+		GFF1932	0.90	-1.4
1,957,781	+		GFF1932	0.90	-1.2
1,957,787	+				-1.0
1,957,789	-				+0.0
1,957,789	-				+0.2
1,957,789	-				-1.2
1,957,795	-				-1.4
1,957,826	+				+0.1
1,957,826	+				+0.4
1,957,831	+				-0.7
1,957,834	-				-1.0
1,957,839	-				-0.5
1,957,843	+				-1.0
1,957,857	+				-0.2
1,957,857	+				+1.0
1,957,862	+				-0.2
1,957,893	+				-1.7
1,957,930	+				-1.7
1,957,938	-				-0.7
1,957,938	-				+0.2
1,957,938	-				-0.7
1,957,938	-				-1.0
1,957,938	-				+0.3
1,957,940	+				-1.2
1,957,940	+				-0.2
1,957,943	-				-2.0
1,957,945	+				-0.4
1,957,945	+				+0.3
1,957,953	-				+1.2
1,957,960	+				+0.1
1,957,967	-				+0.1
1,957,967	-				-0.3
1,957,974	+				-1.4
1,957,974	+				-0.1
1,957,974	+				+0.4
1,957,981	+				-0.4
1,957,982	-				+0.9
1,957,982	-				+0.3
1,958,001	-				+1.5
1,958,046	-		GFF1933	0.25	+0.4
1,958,064	+		GFF1933	0.40	+0.7
1,958,064	+		GFF1933	0.40	-1.7
1,958,085	+		GFF1933	0.56	-1.2
1,958,093	-		GFF1933	0.63	+1.2
1,958,135	-				-0.1
1,958,155	+				-1.2
1,958,158	-				-0.2
1,958,163	-				-0.1
1,958,165	+				-1.3
1,958,165	+				-1.6
1,958,165	+				-0.7
1,958,165	-				-0.6
1,958,170	+				-0.0
1,958,173	-				-0.6
1,958,173	-				+0.4
1,958,173	-				+0.6
1,958,173	-				-0.5
1,958,173	-				-0.8
1,958,173	-				-1.0
1,958,173	-				-0.1
1,958,175	+				-0.4
1,958,184	-				-1.0
1,958,220	-				-0.6
1,958,222	+				-0.1
1,958,240	+				-0.2
1,958,245	+				-1.7
1,958,252	+				-2.2
1,958,289	-				-1.5
1,958,291	+				-0.7
1,958,292	+				-2.5
1,958,299	-				+0.3
1,958,309	-				+0.4
1,958,311	+				+0.8
1,958,311	+				+0.4
1,958,319	-				-0.2
1,958,319	-				+0.4
1,958,321	-				+0.1
1,958,323	-				+0.6
1,958,336	-				+0.2
1,958,339	-				+0.2
1,958,340	-				+0.1
1,958,340	-				-0.5
1,958,340	-				-0.4
1,958,351	+				+0.1
1,958,351	+				-0.2
1,958,359	-				-1.5
1,958,359	-				-0.3
1,958,366	+				-1.1
1,958,366	+				-0.3
1,958,366	+				-0.4
1,958,366	+				+1.0
1,958,371	+				+0.3
1,958,371	+				-2.1
1,958,371	+				-1.8
1,958,374	-				-1.4
1,958,374	-				-1.1
1,958,374	-				+0.0
1,958,374	-				-1.7
1,958,374	-				-0.0
1,958,374	-				-0.1
1,958,376	+				+0.1
1,958,376	+				-1.6
1,958,385	+				+0.6
1,958,431	-				+1.0
1,958,437	-				+1.9
1,958,440	+				+1.2
1,958,441	+				+0.1
1,958,475	-		GFF1934	0.11	-1.2
1,958,478	-		GFF1934	0.11	+0.2
1,958,540	+		GFF1934	0.16	-0.5
1,958,548	-		GFF1934	0.17	+0.5
1,958,548	-		GFF1934	0.17	+0.4
1,958,559	+		GFF1934	0.18	+0.8
1,958,559	+		GFF1934	0.18	-1.7
1,958,572	+		GFF1934	0.19	-0.6
1,958,575	-		GFF1934	0.19	+0.2
1,958,575	-		GFF1934	0.19	+0.1
1,958,576	+		GFF1934	0.19	-0.4
1,958,642	-		GFF1934	0.25	-0.5
1,958,647	-		GFF1934	0.25	-0.4
1,958,649	+		GFF1934	0.25	+1.0
1,958,669	+		GFF1934	0.27	+0.1
1,958,669	+		GFF1934	0.27	-0.9
1,958,679	+		GFF1934	0.28	-2.8
1,958,684	+		GFF1934	0.28	-3.2
1,958,694	+		GFF1934	0.29	+0.3
1,958,729	-		GFF1934	0.32	-1.4
1,958,731	-		GFF1934	0.32	-0.2
1,958,739	+		GFF1934	0.32	+0.5
1,958,741	+		GFF1934	0.33	+0.1
1,958,749	-		GFF1934	0.33	-0.9
1,958,758	+		GFF1934	0.34	+1.3
1,958,777	+		GFF1934	0.35	-0.0
1,958,785	-		GFF1934	0.36	+0.4
1,958,785	-		GFF1934	0.36	-0.1
1,958,793	+		GFF1934	0.37	+0.4
1,958,820	-		GFF1934	0.39	+1.1
1,958,863	-		GFF1934	0.42	+1.4
1,958,918	-		GFF1934	0.47	-0.4
1,958,918	-		GFF1934	0.47	-1.6
1,958,918	-		GFF1934	0.47	-0.3
1,958,918	-		GFF1934	0.47	-0.4
1,958,918	-		GFF1934	0.47	-1.5
1,958,918	-		GFF1934	0.47	-0.5
1,958,923	-		GFF1934	0.47	+0.1
1,958,923	-		GFF1934	0.47	+0.8
1,958,923	-		GFF1934	0.47	-1.2
1,958,942	-		GFF1934	0.49	+0.5
1,958,953	-		GFF1934	0.50	-0.1
1,958,963	-		GFF1934	0.50	+0.6
1,958,980	+		GFF1934	0.52	+0.6
1,958,980	+		GFF1934	0.52	+0.2
1,958,980	+		GFF1934	0.52	-1.1
1,958,988	-		GFF1934	0.52	-0.9
1,958,988	-		GFF1934	0.52	-0.3
1,958,988	-		GFF1934	0.52	-1.2
1,958,998	-		GFF1934	0.53	+0.4
1,959,000	+		GFF1934	0.53	-1.0
1,959,022	-		GFF1934	0.55	-0.3
1,959,034	+		GFF1934	0.56	-0.1
1,959,042	+		GFF1934	0.57	-3.0
1,959,042	+		GFF1934	0.57	-0.4
1,959,042	+		GFF1934	0.57	+0.7
1,959,060	+		GFF1934	0.58	-0.4
1,959,068	-		GFF1934	0.59	-1.9
1,959,072	+		GFF1934	0.59	+0.0
1,959,072	+		GFF1934	0.59	-0.9
1,959,080	-		GFF1934	0.60	-0.6
1,959,080	-		GFF1934	0.60	-0.9
1,959,086	+		GFF1934	0.60	-0.4
1,959,099	-		GFF1934	0.61	-1.0
1,959,099	-		GFF1934	0.61	-1.0
1,959,116	+		GFF1934	0.63	-0.2
1,959,124	-		GFF1934	0.63	-0.0