Strain Fitness in Sphingobium sp. HT1-2 around GFF1928

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,951,469	-		GFF1926	0.49	-0.2
1,951,476	+		GFF1926	0.50	-0.1
1,951,479	-		GFF1926	0.50	+0.9
1,951,484	-		GFF1926	0.51	+1.2
1,951,484	-		GFF1926	0.51	+1.1
1,951,484	-		GFF1926	0.51	-0.6
1,951,507	+		GFF1926	0.52	-0.2
1,951,507	+		GFF1926	0.52	-2.0
1,951,510	-		GFF1926	0.52	-1.8
1,951,510	-		GFF1926	0.52	-0.1
1,951,510	-		GFF1926	0.52	-0.8
1,951,515	-		GFF1926	0.53	+0.3
1,951,515	-		GFF1926	0.53	-0.9
1,951,532	+		GFF1926	0.54	-3.2
1,951,532	+		GFF1926	0.54	-2.0
1,951,532	+		GFF1926	0.54	-1.0
1,951,532	-		GFF1926	0.54	+0.2
1,951,540	-		GFF1926	0.55	+0.3
1,951,540	-		GFF1926	0.55	-0.4
1,951,544	-		GFF1926	0.55	-1.9
1,951,582	-		GFF1926	0.58	-1.3
1,951,591	+		GFF1926	0.59	-0.3
1,951,591	+		GFF1926	0.59	-0.8
1,951,591	+		GFF1926	0.59	-0.3
1,951,591	+		GFF1926	0.59	-0.2
1,951,593	-		GFF1926	0.59	-0.8
1,951,599	-		GFF1926	0.59	-0.7
1,951,603	+		GFF1926	0.59	-1.3
1,951,618	+		GFF1926	0.61	+0.2
1,951,618	+		GFF1926	0.61	-0.1
1,951,623	-		GFF1926	0.61	-0.1
1,951,623	-		GFF1926	0.61	-1.5
1,951,631	-		GFF1926	0.61	+0.4
1,951,633	+		GFF1926	0.62	-1.4
1,951,649	-		GFF1926	0.63	-0.4
1,951,651	+		GFF1926	0.63	-2.0
1,951,675	+		GFF1926	0.65	-2.9
1,951,675	+		GFF1926	0.65	-2.1
1,951,693	+		GFF1926	0.66	-0.1
1,951,693	+		GFF1926	0.66	+1.0
1,951,698	+		GFF1926	0.66	-2.1
1,951,698	+		GFF1926	0.66	-1.2
1,951,698	+		GFF1926	0.66	-1.0
1,951,699	+		GFF1926	0.67	-0.7
1,951,701	-		GFF1926	0.67	-0.2
1,951,701	-		GFF1926	0.67	-1.0
1,951,701	-		GFF1926	0.67	-2.2
1,951,706	-		GFF1926	0.67	-0.8
1,951,706	-		GFF1926	0.67	+0.4
1,951,706	-		GFF1926	0.67	-2.0
1,951,706	-		GFF1926	0.67	+0.4
1,951,706	-		GFF1926	0.67	-1.0
1,951,706	-		GFF1926	0.67	-0.4
1,951,706	-		GFF1926	0.67	-0.4
1,951,706	-		GFF1926	0.67	-0.4
1,951,706	-		GFF1926	0.67	-0.2
1,951,706	-		GFF1926	0.67	-0.0
1,951,706	-		GFF1926	0.67	-0.3
1,951,724	-		GFF1926	0.68	-2.7
1,951,726	+		GFF1926	0.69	-0.2
1,951,769	+		GFF1926	0.72	-0.4
1,951,775	+		GFF1926	0.72	+1.2
1,951,783	-		GFF1926	0.73	+0.2
1,951,783	-		GFF1926	0.73	-0.9
1,951,783	-		GFF1926	0.73	-1.0
1,951,783	-		GFF1926	0.73	-0.3
1,951,783	-		GFF1926	0.73	+0.5
1,951,785	+		GFF1926	0.73	+0.9
1,951,787	-		GFF1926	0.73	-0.3
1,951,801	-		GFF1926	0.74	+0.6
1,951,818	+		GFF1926	0.75	-2.2
1,951,821	-		GFF1926	0.76	-2.3
1,951,826	-		GFF1926	0.76	-0.7
1,951,826	-		GFF1926	0.76	-0.9
1,951,826	-		GFF1926	0.76	+0.2
1,951,828	+		GFF1926	0.76	-1.0
1,951,832	+		GFF1926	0.76	-2.0
1,951,832	+		GFF1926	0.76	+0.0
1,951,833	+		GFF1926	0.76	+0.6
1,951,836	-		GFF1926	0.77	+2.0
1,951,836	-		GFF1926	0.77	+0.6
1,951,836	-		GFF1926	0.77	+0.2
1,951,836	-		GFF1926	0.77	-0.9
1,951,840	-		GFF1926	0.77	+1.4
1,951,840	-		GFF1926	0.77	+1.1
1,951,840	-		GFF1926	0.77	-0.9
1,951,840	-		GFF1926	0.77	+1.2
1,951,840	-		GFF1926	0.77	+0.8
1,951,846	-		GFF1926	0.77	+1.5
1,951,862	+		GFF1926	0.79	-0.1
1,951,862	+		GFF1926	0.79	-0.8
1,951,870	-		GFF1926	0.79	-0.8
1,951,870	-		GFF1926	0.79	-0.3
1,951,872	+		GFF1926	0.79	+1.0
1,951,875	-		GFF1926	0.80	+0.1
1,951,882	-		GFF1926	0.80	+0.8
1,951,909	+		GFF1926	0.82	-1.2
1,951,929	-		GFF1926	0.84	-0.5
1,951,930	-		GFF1926	0.84	+0.1
1,951,931	-		GFF1926	0.84	-0.8
1,951,940	+		GFF1926	0.84	+0.8
1,951,943	-		GFF1926	0.85	+1.8
1,951,945	+		GFF1926	0.85	-0.0
1,951,945	+		GFF1926	0.85	-1.7
1,951,953	-		GFF1926	0.85	+0.9
1,951,953	-		GFF1926	0.85	+0.8
1,951,957	+		GFF1926	0.86	-0.6
1,951,963	-		GFF1926	0.86	-1.1
1,951,976	+		GFF1926	0.87	+0.4
1,951,976	+		GFF1926	0.87	+0.8
1,951,976	+		GFF1926	0.87	-1.0
1,951,994	-		GFF1926	0.88	-0.4
1,952,001	+		GFF1926	0.89	+0.2
1,952,038	-				-0.6
1,952,038	-				-0.4
1,952,038	-				-0.8
1,952,040	+				+0.0
1,952,045	-				+0.1
1,952,048	-				-0.3
1,952,048	-				-1.2
1,952,048	-				-0.4
1,952,078	+				-1.4
1,952,086	-				-1.2
1,952,089	-				+0.2
1,952,098	+				+0.6
1,952,152	+				+0.3
1,952,152	+				-1.4
1,952,163	+				-0.3
1,952,167	-				+0.3
1,952,168	+				-0.6
1,952,168	+				-1.5
1,952,176	-				+0.2
1,952,176	-				-1.0
1,952,234	-		GFF1927	0.37	-1.7
1,952,256	+		GFF1927	0.48	+0.1
1,952,293	+		GFF1927	0.65	-3.0
1,952,301	-		GFF1927	0.69	+0.3
1,952,379	+				+0.3
1,952,403	-				+0.6
1,952,406	+				+0.8
1,952,406	+				-1.7
1,952,414	-				-1.9
1,952,421	-				-1.5
1,952,459	-				+0.5
1,952,475	+		GFF1928	0.11	-0.4
1,952,476	+		GFF1928	0.11	-0.3
1,952,476	+		GFF1928	0.11	-1.3
1,952,479	-		GFF1928	0.12	-0.1
1,952,481	+		GFF1928	0.13	-0.0
1,952,484	-		GFF1928	0.14	+1.7
1,952,516	+		GFF1928	0.26	+0.3
1,952,517	+		GFF1928	0.26	+1.4
1,952,517	+		GFF1928	0.26	-0.1
1,952,517	+		GFF1928	0.26	-2.4
1,952,520	-		GFF1928	0.27	+0.7
1,952,523	+		GFF1928	0.29	-0.9
1,952,525	-		GFF1928	0.29	-0.2
1,952,525	-		GFF1928	0.29	-0.2
1,952,525	-		GFF1928	0.29	+0.2
1,952,542	-		GFF1928	0.36	+0.9
1,952,545	+		GFF1928	0.37	-1.4
1,952,567	+		GFF1928	0.45	-1.2
1,952,567	+		GFF1928	0.45	+0.1
1,952,567	+		GFF1928	0.45	-0.3
1,952,567	+		GFF1928	0.45	-0.6
1,952,567	+		GFF1928	0.45	+0.5
1,952,567	+		GFF1928	0.45	-0.8
1,952,572	+		GFF1928	0.47	+0.9
1,952,572	+		GFF1928	0.47	+0.7
1,952,575	-		GFF1928	0.48	+2.2
1,952,575	-		GFF1928	0.48	-0.3
1,952,577	+		GFF1928	0.49	-1.0
1,952,585	-		GFF1928	0.51	+1.1
1,952,585	-		GFF1928	0.51	+1.1
1,952,585	-		GFF1928	0.51	+1.0
1,952,590	-		GFF1928	0.53	+1.4
1,952,604	-		GFF1928	0.59	-1.4
1,952,609	-		GFF1928	0.60	-0.3
1,952,627	+		GFF1928	0.67	-1.2
1,952,642	+		GFF1928	0.73	+1.0
1,952,642	+		GFF1928	0.73	+0.3
1,952,687	+		GFF1928	0.89	+0.2
1,952,687	+		GFF1928	0.89	-1.8
1,952,690	-				-1.3
1,952,692	+				+1.1
1,952,692	+				+1.1
1,952,692	+				-0.2
1,952,692	+				-1.9
1,952,692	+				-0.4
1,952,692	+				-0.7
1,952,695	-				-0.6
1,952,697	+				+1.4
1,952,700	-				-3.0
1,952,700	-				+1.1
1,952,700	-				+1.0
1,952,700	-				-0.2
1,952,700	-				+0.7
1,952,700	-				+0.1
1,952,700	-				+0.7
1,952,700	-				-1.2
1,952,705	-				+0.7
1,952,714	+				-0.3
1,952,714	+				-0.0
1,952,722	-				-0.4
1,952,724	-				+0.6
1,952,756	+				-0.2
1,952,770	-				-0.2
1,952,787	+				+0.3
1,952,787	+				-0.6
1,952,795	-				+0.4
1,952,795	-				-0.7
1,952,795	-				-1.6
1,952,801	+				-1.2
1,952,809	-				+0.1
1,952,817	-				-1.4
1,952,826	+				-1.7
1,952,834	-				-1.5
1,952,836	+				-1.0
1,952,845	+				+0.1
1,952,845	+				-0.2
1,952,853	-				-1.5
1,952,877	-		GFF1929	0.12	-0.5
1,952,882	+		GFF1929	0.12	+0.5
1,952,916	+		GFF1929	0.16	-0.2
1,952,924	-		GFF1929	0.16	+0.1
1,952,935	+		GFF1929	0.17	+0.1
1,952,943	-		GFF1929	0.18	-1.6
1,952,943	-		GFF1929	0.18	-0.2
1,952,943	-		GFF1929	0.18	-1.4
1,952,943	-		GFF1929	0.18	-2.0
1,952,943	-		GFF1929	0.18	+0.4
1,952,949	+		GFF1929	0.19	-0.1
1,952,967	+		GFF1929	0.20	-0.1
1,952,975	+		GFF1929	0.21	+0.1
1,952,977	+		GFF1929	0.21	+1.5
1,952,986	+		GFF1929	0.22	-0.3
1,952,994	-		GFF1929	0.23	-1.2
1,952,994	-		GFF1929	0.23	+0.3
1,952,994	-		GFF1929	0.23	+0.9
1,953,006	+		GFF1929	0.24	+1.1
1,953,014	+		GFF1929	0.24	+1.0
1,953,014	-		GFF1929	0.24	+0.1
1,953,014	-		GFF1929	0.24	+1.0
1,953,031	+		GFF1929	0.26	+0.8
1,953,052	+		GFF1929	0.28	+0.6
1,953,057	+		GFF1929	0.28	-1.6
1,953,060	-		GFF1929	0.29	+0.1
1,953,062	+		GFF1929	0.29	-1.0
1,953,065	-		GFF1929	0.29	-1.2
1,953,067	+		GFF1929	0.29	+0.3
1,953,067	+		GFF1929	0.29	-0.9
1,953,067	+		GFF1929	0.29	+0.3
1,953,067	+		GFF1929	0.29	-0.2
1,953,070	-		GFF1929	0.30	-0.7
1,953,075	-		GFF1929	0.30	+0.0
1,953,075	-		GFF1929	0.30	-1.4
1,953,083	+		GFF1929	0.31	+1.3
1,953,091	-		GFF1929	0.31	-0.8
1,953,096	-		GFF1929	0.32	-0.2
1,953,104	+		GFF1929	0.33	-0.0
1,953,119	+		GFF1929	0.34	+0.2
1,953,136	+		GFF1929	0.36	+0.3
1,953,136	+		GFF1929	0.36	-1.4
1,953,173	+		GFF1929	0.39	-1.4
1,953,192	-		GFF1929	0.41	+0.4
1,953,192	-		GFF1929	0.41	-1.6
1,953,195	+		GFF1929	0.41	-0.9
1,953,198	-		GFF1929	0.41	+1.0
1,953,198	-		GFF1929	0.41	+0.2
1,953,213	+		GFF1929	0.42	-0.4
1,953,213	+		GFF1929	0.42	+0.1
1,953,225	+		GFF1929	0.44	-0.5
1,953,233	+		GFF1929	0.44	-2.1
1,953,241	-		GFF1929	0.45	-0.7
1,953,273	+		GFF1929	0.48	-0.5
1,953,297	-		GFF1929	0.50	-0.3
1,953,302	+		GFF1929	0.51	-2.2
1,953,302	+		GFF1929	0.51	-1.3
1,953,302	+		GFF1929	0.51	-0.5
1,953,310	-		GFF1929	0.51	+0.1
1,953,310	-		GFF1929	0.51	+0.5
1,953,326	+		GFF1929	0.53	-0.5
1,953,340	+		GFF1929	0.54	-2.5
1,953,353	-		GFF1929	0.55	-0.0
1,953,355	-		GFF1929	0.55	-1.5
1,953,391	+		GFF1929	0.59	+0.6
1,953,399	-		GFF1929	0.59	-1.7
1,953,414	-		GFF1929	0.61	-1.3
1,953,425	-		GFF1929	0.62	+0.0
1,953,426	+		GFF1929	0.62	+0.1
1,953,426	+		GFF1929	0.62	+0.3
1,953,428	+		GFF1929	0.62	-0.0
1,953,436	-		GFF1929	0.63	-0.7
1,953,441	-		GFF1929	0.63	-0.5
1,953,445	+		GFF1929	0.63	-1.0
1,953,445	+		GFF1929	0.63	-1.2
1,953,450	+		GFF1929	0.64	+0.7
1,953,450	+		GFF1929	0.64	-0.0
1,953,453	-		GFF1929	0.64	-0.3
1,953,453	-		GFF1929	0.64	-1.5
1,953,453	-		GFF1929	0.64	-0.3
1,953,464	+		GFF1929	0.65	-0.0
1,953,490	-		GFF1929	0.68	-0.3
1,953,506	-		GFF1929	0.69	+0.4
1,953,544	+		GFF1929	0.72	-0.1
1,953,567	+		GFF1929	0.75	-0.0
1,953,579	+		GFF1929	0.76	-0.2
1,953,582	+		GFF1929	0.76	+0.0
1,953,589	+		GFF1929	0.77	-0.7
1,953,597	-		GFF1929	0.77	+0.3
1,953,608	-		GFF1929	0.78	+0.7
1,953,614	+		GFF1929	0.79	+0.6
1,953,614	+		GFF1929	0.79	-0.5
1,953,614	+		GFF1929	0.79	+0.1
1,953,622	-		GFF1929	0.80	-1.0
1,953,648	+		GFF1929	0.82	-1.0
1,953,658	-		GFF1929	0.83	-0.1
1,953,670	-		GFF1929	0.84	-1.2
1,953,709	+		GFF1929	0.87	-1.9
1,953,715	-		GFF1929	0.88	-0.3