Strain Fitness in Sphingobium sp. HT1-2 around GFF1905

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,926,843	-				+1.3
1,926,845	+				+1.4
1,926,845	+				-0.4
1,926,853	-				-1.0
1,926,863	+				-1.0
1,926,869	+				-1.6
1,926,881	+				+0.9
1,926,886	+				+0.1
1,927,522	+				+0.4
1,927,536	+				-0.5
1,927,543	-				-0.4
1,927,560	+				-0.8
1,927,568	-				-0.7
1,927,569	-				+0.8
1,927,599	-				-0.2
1,927,617	+				+0.6
1,927,617	-				-0.4
1,927,645	+				-0.5
1,927,653	-				+0.3
1,927,669	+				+0.1
1,927,672	-				-0.1
1,927,677	-				-1.2
1,927,680	-				-0.0
1,927,685	-				-1.0
1,927,689	+				-1.0
1,927,701	+				-1.2
1,927,701	+				+0.6
1,927,703	+				-1.4
1,927,704	-				+0.6
1,927,704	-				-1.1
1,927,704	-				+0.7
1,927,719	-				+0.7
1,927,729	+		GFF1905	0.10	+0.0
1,927,733	+		GFF1905	0.11	+0.2
1,927,800	-		GFF1905	0.17	-0.3
1,927,805	+		GFF1905	0.17	+0.6
1,927,805	-		GFF1905	0.17	+0.4
1,927,810	+		GFF1905	0.18	-0.1
1,927,840	+		GFF1905	0.21	-0.7
1,927,845	+		GFF1905	0.21	+0.6
1,927,863	+		GFF1905	0.23	-1.4
1,927,864	+		GFF1905	0.23	+0.1
1,927,864	+		GFF1905	0.23	-2.1
1,927,864	+		GFF1905	0.23	-1.7
1,927,869	+		GFF1905	0.24	+0.3
1,927,874	+		GFF1905	0.24	-1.0
1,927,874	+		GFF1905	0.24	-0.8
1,927,874	+		GFF1905	0.24	-0.4
1,927,874	+		GFF1905	0.24	-0.8
1,927,874	+		GFF1905	0.24	-0.1
1,927,874	+		GFF1905	0.24	+0.2
1,927,881	+		GFF1905	0.25	+1.3
1,927,882	-		GFF1905	0.25	-0.1
1,927,882	-		GFF1905	0.25	-0.1
1,927,882	-		GFF1905	0.25	-0.7
1,927,882	-		GFF1905	0.25	+0.4
1,927,889	-		GFF1905	0.26	-0.1
1,927,915	+		GFF1905	0.28	-1.3
1,927,918	-		GFF1905	0.28	-1.0
1,927,918	-		GFF1905	0.28	-1.5
1,927,923	-		GFF1905	0.29	+0.1
1,927,935	+		GFF1905	0.30	+0.8
1,927,952	+		GFF1905	0.32	-0.7
1,927,958	+		GFF1905	0.32	-0.9
1,927,958	+		GFF1905	0.32	+0.2
1,927,972	+		GFF1905	0.34	-1.4
1,927,980	-		GFF1905	0.34	-0.5
1,927,985	-		GFF1905	0.35	-3.1
1,927,985	-		GFF1905	0.35	-0.9
1,927,985	-		GFF1905	0.35	+0.5
1,927,989	+		GFF1905	0.35	-1.3
1,928,009	+		GFF1905	0.37	-1.3
1,928,017	-		GFF1905	0.38	+0.6
1,928,024	+		GFF1905	0.39	-0.0
1,928,032	-		GFF1905	0.39	+0.6
1,928,032	-		GFF1905	0.39	+1.1
1,928,082	+		GFF1905	0.44	-0.8
1,928,082	+		GFF1905	0.44	+1.6
1,928,089	+		GFF1905	0.45	-0.2
1,928,090	-		GFF1905	0.45	-1.9
1,928,110	+		GFF1905	0.47	-0.4
1,928,110	+		GFF1905	0.47	-1.5
1,928,110	+		GFF1905	0.47	-0.3
1,928,110	+		GFF1905	0.47	+0.0
1,928,110	+		GFF1905	0.47	+0.3
1,928,118	-		GFF1905	0.48	-2.8
1,928,118	-		GFF1905	0.48	+0.3
1,928,118	-		GFF1905	0.48	-0.4
1,928,118	-		GFF1905	0.48	-0.0
1,928,124	+		GFF1905	0.48	+0.1
1,928,139	+		GFF1905	0.50	+0.8
1,928,144	+		GFF1905	0.50	-0.1
1,928,144	+		GFF1905	0.50	+1.0
1,928,144	+		GFF1905	0.50	+0.2
1,928,147	-		GFF1905	0.51	-0.5
1,928,152	-		GFF1905	0.51	-1.2
1,928,152	-		GFF1905	0.51	-0.7
1,928,152	-		GFF1905	0.51	-1.2
1,928,152	-		GFF1905	0.51	-1.1
1,928,152	-		GFF1905	0.51	+0.1
1,928,152	-		GFF1905	0.51	+0.1
1,928,168	+		GFF1905	0.53	-1.2
1,928,173	-		GFF1905	0.53	-0.7
1,928,175	+		GFF1905	0.53	-1.2
1,928,202	-		GFF1905	0.56	-0.5
1,928,202	-		GFF1905	0.56	+0.4
1,928,202	-		GFF1905	0.56	-0.2
1,928,206	+		GFF1905	0.56	-0.1
1,928,214	-		GFF1905	0.57	+0.1
1,928,231	+		GFF1905	0.59	+0.6
1,928,240	+		GFF1905	0.60	-0.0
1,928,248	-		GFF1905	0.60	+0.2
1,928,248	-		GFF1905	0.60	+0.4
1,928,254	+		GFF1905	0.61	-1.5
1,928,281	-		GFF1905	0.63	-1.0
1,928,282	+		GFF1905	0.64	-0.4
1,928,282	+		GFF1905	0.64	+1.8
1,928,282	+		GFF1905	0.64	-0.7
1,928,282	+		GFF1905	0.64	-0.0
1,928,287	+		GFF1905	0.64	+0.7
1,928,287	+		GFF1905	0.64	-1.6
1,928,290	-		GFF1905	0.64	+1.5
1,928,290	-		GFF1905	0.64	+1.0
1,928,292	+		GFF1905	0.65	-0.9
1,928,295	-		GFF1905	0.65	-0.3
1,928,303	+		GFF1905	0.66	+0.1
1,928,309	-		GFF1905	0.66	-0.0
1,928,318	+		GFF1905	0.67	+0.1
1,928,318	+		GFF1905	0.67	-1.0
1,928,318	+		GFF1905	0.67	-0.0
1,928,318	+		GFF1905	0.67	-2.1
1,928,318	+		GFF1905	0.67	+0.3
1,928,320	+		GFF1905	0.67	-0.7
1,928,325	+		GFF1905	0.68	-0.8
1,928,325	+		GFF1905	0.68	-1.9
1,928,325	+		GFF1905	0.68	-0.3
1,928,325	+		GFF1905	0.68	-0.9
1,928,325	+		GFF1905	0.68	-1.2
1,928,325	+		GFF1905	0.68	-0.7
1,928,325	+		GFF1905	0.68	+0.2
1,928,325	+		GFF1905	0.68	-0.7
1,928,325	+		GFF1905	0.68	+1.1
1,928,325	+		GFF1905	0.68	+0.1
1,928,326	-		GFF1905	0.68	+0.4
1,928,326	-		GFF1905	0.68	+1.1
1,928,326	-		GFF1905	0.68	-0.2
1,928,333	-		GFF1905	0.69	-0.6
1,928,333	-		GFF1905	0.69	-0.4
1,928,333	-		GFF1905	0.69	-1.7
1,928,333	-		GFF1905	0.69	+1.8
1,928,333	-		GFF1905	0.69	-1.2
1,928,333	-		GFF1905	0.69	-0.2
1,928,333	-		GFF1905	0.69	+0.2
1,928,333	-		GFF1905	0.69	-0.4
1,928,333	-		GFF1905	0.69	-0.3
1,928,333	-		GFF1905	0.69	+0.9
1,928,333	-		GFF1905	0.69	-0.2
1,928,385	+		GFF1905	0.74	+1.4
1,928,435	+		GFF1905	0.78	-1.1
1,928,437	-		GFF1905	0.79	+0.6
1,928,446	+		GFF1905	0.79	-0.7
1,928,454	-		GFF1905	0.80	-0.7
1,928,463	+		GFF1905	0.81	+0.5
1,928,475	+		GFF1905	0.82	+1.0
1,928,513	+		GFF1905	0.86	-1.6
1,928,521	-		GFF1905	0.87	-1.7
1,928,528	-		GFF1905	0.87	-0.0
1,928,547	-		GFF1905	0.89	-1.0
1,928,559	+				-0.1
1,928,636	-				-0.1
1,928,649	-				+0.7
1,928,649	-				+0.5
1,928,652	+				-1.8
1,928,653	+				+0.5
1,928,659	+				-0.7
1,928,659	+				-1.0
1,928,660	-				+0.5
1,928,660	-				+0.8
1,928,660	-				-2.0
1,928,718	-				-1.6
1,928,719	+				-0.8
1,928,729	+				+0.8
1,928,729	-				-1.4
1,928,734	+				-1.5
1,928,737	-				-2.5
1,928,781	+				-1.0
1,928,789	+				-0.4
1,928,789	-				-1.0
1,928,807	+		GFF1906	0.11	-0.6
1,928,855	+		GFF1906	0.14	+0.6
1,928,868	-		GFF1906	0.15	+0.5
1,928,874	+		GFF1906	0.15	-0.8
1,928,881	+		GFF1906	0.16	-0.7
1,928,885	+		GFF1906	0.16	-0.8
1,928,903	+		GFF1906	0.17	-0.0
1,928,929	-		GFF1906	0.19	-0.3
1,928,935	+		GFF1906	0.19	+0.8
1,928,966	+		GFF1906	0.22	-1.3
1,928,966	-		GFF1906	0.22	+0.5
1,928,974	-		GFF1906	0.22	+1.1
1,928,979	-		GFF1906	0.22	-2.5
1,928,981	+		GFF1906	0.23	-1.2
1,929,005	-		GFF1906	0.24	+0.3
1,929,007	+		GFF1906	0.24	-1.1
1,929,036	-		GFF1906	0.26	-0.1
1,929,036	-		GFF1906	0.26	+0.5
1,929,036	-		GFF1906	0.26	-0.5
1,929,044	+		GFF1906	0.27	-0.0
1,929,049	+		GFF1906	0.27	-0.4
1,929,049	+		GFF1906	0.27	-2.4
1,929,057	-		GFF1906	0.28	-1.2
1,929,082	+		GFF1906	0.30	-0.4
1,929,118	-		GFF1906	0.32	-0.6
1,929,120	+		GFF1906	0.32	+0.3
1,929,128	-		GFF1906	0.33	+0.8
1,929,130	+		GFF1906	0.33	+0.3
1,929,130	+		GFF1906	0.33	+0.4
1,929,133	-		GFF1906	0.33	+1.4
1,929,138	-		GFF1906	0.33	+0.8
1,929,138	-		GFF1906	0.33	-0.0
1,929,138	-		GFF1906	0.33	-1.4
1,929,138	-		GFF1906	0.33	-0.8
1,929,161	+		GFF1906	0.35	-0.7
1,929,169	-		GFF1906	0.35	-0.7
1,929,179	+		GFF1906	0.36	-1.5
1,929,201	+		GFF1906	0.38	+0.7
1,929,201	+		GFF1906	0.38	-0.7
1,929,201	+		GFF1906	0.38	+1.6
1,929,209	-		GFF1906	0.38	-1.9
1,929,209	-		GFF1906	0.38	-1.8
1,929,213	-		GFF1906	0.38	-0.2
1,929,214	-		GFF1906	0.39	+0.9
1,929,214	-		GFF1906	0.39	-0.6
1,929,239	+		GFF1906	0.40	-0.3
1,929,239	+		GFF1906	0.40	+0.8
1,929,239	+		GFF1906	0.40	-0.4
1,929,239	+		GFF1906	0.40	-1.7
1,929,247	-		GFF1906	0.41	-1.2
1,929,247	-		GFF1906	0.41	-0.3
1,929,247	-		GFF1906	0.41	-0.3
1,929,291	+		GFF1906	0.44	-0.8
1,929,296	+		GFF1906	0.44	-0.6
1,929,296	+		GFF1906	0.44	+0.2
1,929,304	-		GFF1906	0.45	+0.2
1,929,305	-		GFF1906	0.45	+0.6
1,929,305	-		GFF1906	0.45	-1.9
1,929,305	-		GFF1906	0.45	+0.4
1,929,312	+		GFF1906	0.45	+1.6
1,929,322	+		GFF1906	0.46	-0.9
1,929,325	-		GFF1906	0.46	-0.5
1,929,330	-		GFF1906	0.46	+0.9
1,929,338	-		GFF1906	0.47	-0.3
1,929,358	+		GFF1906	0.48	-1.4
1,929,374	-		GFF1906	0.49	+0.2
1,929,374	-		GFF1906	0.49	-0.7
1,929,374	-		GFF1906	0.49	-0.6
1,929,374	-		GFF1906	0.49	-1.2
1,929,393	-		GFF1906	0.51	+0.1
1,929,393	-		GFF1906	0.51	-0.1
1,929,456	+		GFF1906	0.55	-0.3
1,929,457	-		GFF1906	0.55	+1.0
1,929,464	-		GFF1906	0.56	+0.2
1,929,474	+		GFF1906	0.56	-1.1
1,929,480	+		GFF1906	0.57	-0.5
1,929,482	-		GFF1906	0.57	+1.6
1,929,484	+		GFF1906	0.57	-0.1
1,929,484	+		GFF1906	0.57	+0.1
1,929,484	-		GFF1906	0.57	+0.3
1,929,492	-		GFF1906	0.58	+1.4
1,929,492	-		GFF1906	0.58	-1.9
1,929,511	+		GFF1906	0.59	-0.5
1,929,519	-		GFF1906	0.59	+0.0
1,929,525	-		GFF1906	0.60	-0.4
1,929,527	-		GFF1906	0.60	-0.9
1,929,529	-		GFF1906	0.60	+0.2
1,929,531	+		GFF1906	0.60	-0.0
1,929,531	+		GFF1906	0.60	+0.0
1,929,531	+		GFF1906	0.60	-0.3
1,929,531	+		GFF1906	0.60	+0.5
1,929,531	+		GFF1906	0.60	+1.1
1,929,539	-		GFF1906	0.61	+0.2
1,929,539	-		GFF1906	0.61	+0.4
1,929,539	-		GFF1906	0.61	-1.4
1,929,539	-		GFF1906	0.61	-1.4
1,929,539	-		GFF1906	0.61	-0.1
1,929,539	-		GFF1906	0.61	-1.0
1,929,539	-		GFF1906	0.61	-0.3
1,929,539	-		GFF1906	0.61	+0.9
1,929,543	+		GFF1906	0.61	-1.6
1,929,545	-		GFF1906	0.61	+0.4
1,929,554	+		GFF1906	0.62	+1.1
1,929,573	-		GFF1906	0.63	+0.8
1,929,573	-		GFF1906	0.63	+1.1
1,929,577	+		GFF1906	0.63	-0.5
1,929,593	+		GFF1906	0.64	-2.5
1,929,595	+		GFF1906	0.65	-1.3
1,929,597	+		GFF1906	0.65	+0.8
1,929,597	+		GFF1906	0.65	-1.9
1,929,597	+		GFF1906	0.65	+0.4
1,929,597	+		GFF1906	0.65	-0.6
1,929,597	+		GFF1906	0.65	-1.4
1,929,597	+		GFF1906	0.65	+0.7
1,929,597	+		GFF1906	0.65	-1.7
1,929,597	+		GFF1906	0.65	-0.0
1,929,605	-		GFF1906	0.65	-0.0
1,929,605	-		GFF1906	0.65	-1.8
1,929,605	-		GFF1906	0.65	-0.3
1,929,605	-		GFF1906	0.65	-0.7
1,929,605	-		GFF1906	0.65	-2.0
1,929,605	-		GFF1906	0.65	-0.2
1,929,605	-		GFF1906	0.65	-0.7
1,929,605	-		GFF1906	0.65	-0.0
1,929,607	+		GFF1906	0.65	-0.8
1,929,607	+		GFF1906	0.65	-0.9
1,929,607	+		GFF1906	0.65	+0.3
1,929,611	+		GFF1906	0.66	-0.3
1,929,611	+		GFF1906	0.66	-0.4
1,929,615	-		GFF1906	0.66	-0.2
1,929,615	-		GFF1906	0.66	+0.7
1,929,615	-		GFF1906	0.66	+1.0
1,929,620	-		GFF1906	0.66	-2.5
1,929,624	+		GFF1906	0.67	-1.3
1,929,624	+		GFF1906	0.67	+0.6
1,929,624	+		GFF1906	0.67	+0.9
1,929,632	-		GFF1906	0.67	-0.3
1,929,632	-		GFF1906	0.67	+1.2
1,929,632	-		GFF1906	0.67	-0.5
1,929,632	-		GFF1906	0.67	+0.1
1,929,632	-		GFF1906	0.67	+0.1