Strain Fitness in Sphingobium sp. HT1-2 around GFF1882

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,908,385	-		GFF1881	0.74	-0.2
1,908,745	+				+0.2
1,908,745	+				+1.1
1,908,745	+				+1.2
1,908,745	+				-0.7
1,908,753	-				+0.2
1,908,790	-				-1.4
1,908,829	+				-1.8
1,908,829	+				+0.1
1,908,837	-				-0.5
1,908,851	-				+0.8
1,908,886	-				-0.7
1,908,902	+				-0.5
1,908,912	-				+0.6
1,908,916	+				-1.4
1,908,923	+				-1.4
1,908,934	+				-0.2
1,908,937	-				+0.9
1,908,944	+				-1.3
1,908,965	-				+0.7
1,908,965	-				-0.1
1,908,965	-				-0.6
1,908,974	+				+0.3
1,908,977	-				-0.2
1,908,977	-				-0.7
1,908,977	-				+0.5
1,908,983	-				-1.0
1,908,990	-				-0.7
1,909,007	+				-0.7
1,909,015	-				-2.3
1,909,015	-				-0.1
1,909,075	+		GFF1882	0.10	+0.4
1,909,075	+		GFF1882	0.10	+0.6
1,909,077	+		GFF1882	0.10	+1.1
1,909,083	+		GFF1882	0.11	-0.1
1,909,083	-		GFF1882	0.11	-0.2
1,909,084	+		GFF1882	0.11	+0.7
1,909,085	-		GFF1882	0.11	+0.8
1,909,091	-		GFF1882	0.11	+1.3
1,909,098	+		GFF1882	0.12	-0.2
1,909,106	-		GFF1882	0.12	-1.4
1,909,115	+		GFF1882	0.13	-0.9
1,909,119	+		GFF1882	0.13	+0.5
1,909,119	+		GFF1882	0.13	-0.7
1,909,126	-		GFF1882	0.13	+0.2
1,909,140	+		GFF1882	0.14	+1.2
1,909,161	+		GFF1882	0.16	+0.2
1,909,177	-		GFF1882	0.17	-0.2
1,909,177	-		GFF1882	0.17	+0.3
1,909,178	+		GFF1882	0.17	+1.6
1,909,195	+		GFF1882	0.18	-0.4
1,909,195	+		GFF1882	0.18	-0.6
1,909,195	+		GFF1882	0.18	-0.8
1,909,195	+		GFF1882	0.18	-0.2
1,909,203	-		GFF1882	0.18	-0.7
1,909,204	-		GFF1882	0.18	+0.6
1,909,205	+		GFF1882	0.18	-1.2
1,909,213	-		GFF1882	0.19	-0.9
1,909,224	-		GFF1882	0.19	-0.5
1,909,224	-		GFF1882	0.19	-0.4
1,909,230	+		GFF1882	0.20	+0.3
1,909,234	-		GFF1882	0.20	+0.2
1,909,235	+		GFF1882	0.20	+1.2
1,909,249	+		GFF1882	0.21	+1.4
1,909,278	-		GFF1882	0.23	-1.0
1,909,280	+		GFF1882	0.23	-0.1
1,909,288	-		GFF1882	0.23	-0.1
1,909,288	-		GFF1882	0.23	+1.0
1,909,288	-		GFF1882	0.23	+0.1
1,909,293	-		GFF1882	0.24	-0.6
1,909,293	-		GFF1882	0.24	-0.2
1,909,301	+		GFF1882	0.24	+0.4
1,909,330	+		GFF1882	0.26	+0.5
1,909,330	+		GFF1882	0.26	-1.3
1,909,330	+		GFF1882	0.26	+1.4
1,909,338	-		GFF1882	0.26	+0.5
1,909,338	-		GFF1882	0.26	+0.1
1,909,341	+		GFF1882	0.27	+0.2
1,909,377	-		GFF1882	0.29	-2.6
1,909,378	+		GFF1882	0.29	+0.1
1,909,427	+		GFF1882	0.32	-0.3
1,909,435	-		GFF1882	0.32	-1.6
1,909,435	-		GFF1882	0.32	+0.7
1,909,463	+		GFF1882	0.34	+1.1
1,909,463	+		GFF1882	0.34	-0.6
1,909,471	-		GFF1882	0.35	-0.3
1,909,476	-		GFF1882	0.35	+1.1
1,909,479	+		GFF1882	0.35	+0.4
1,909,489	-		GFF1882	0.36	+0.0
1,909,535	-		GFF1882	0.38	+0.4
1,909,535	-		GFF1882	0.38	+0.8
1,909,550	+		GFF1882	0.39	-2.0
1,909,550	+		GFF1882	0.39	-0.2
1,909,558	-		GFF1882	0.40	-1.6
1,909,602	+		GFF1882	0.43	-0.5
1,909,602	+		GFF1882	0.43	+0.9
1,909,610	-		GFF1882	0.43	+0.6
1,909,610	-		GFF1882	0.43	-0.6
1,909,610	-		GFF1882	0.43	-1.8
1,909,620	-		GFF1882	0.44	+0.1
1,909,659	-		GFF1882	0.46	+0.4
1,909,659	-		GFF1882	0.46	-0.7
1,909,678	+		GFF1882	0.47	-0.2
1,909,680	+		GFF1882	0.47	-0.8
1,909,680	+		GFF1882	0.47	+0.4
1,909,680	+		GFF1882	0.47	-0.2
1,909,693	-		GFF1882	0.48	-1.2
1,909,696	-		GFF1882	0.48	+0.2
1,909,706	+		GFF1882	0.49	-1.9
1,909,727	+		GFF1882	0.50	-0.4
1,909,735	-		GFF1882	0.51	-0.4
1,909,742	-		GFF1882	0.51	-0.6
1,909,754	+		GFF1882	0.52	+0.3
1,909,754	+		GFF1882	0.52	+0.3
1,909,781	+		GFF1882	0.54	+1.0
1,909,781	+		GFF1882	0.54	-0.5
1,909,781	+		GFF1882	0.54	-1.2
1,909,781	+		GFF1882	0.54	+0.9
1,909,789	-		GFF1882	0.54	-1.2
1,909,793	+		GFF1882	0.54	-1.1
1,909,801	-		GFF1882	0.55	-0.7
1,909,802	-		GFF1882	0.55	+0.7
1,909,827	-		GFF1882	0.56	-0.2
1,909,834	+		GFF1882	0.57	-1.4
1,909,849	+		GFF1882	0.58	-0.1
1,909,857	-		GFF1882	0.58	-0.6
1,909,857	-		GFF1882	0.58	+0.1
1,909,865	-		GFF1882	0.59	-2.2
1,909,872	+		GFF1882	0.59	-0.7
1,909,872	+		GFF1882	0.59	+0.7
1,909,872	+		GFF1882	0.59	-0.5
1,909,872	+		GFF1882	0.59	+1.0
1,909,872	+		GFF1882	0.59	-1.4
1,909,875	+		GFF1882	0.59	-0.8
1,909,875	+		GFF1882	0.59	+0.2
1,909,877	+		GFF1882	0.59	-1.4
1,909,877	+		GFF1882	0.59	+0.6
1,909,877	+		GFF1882	0.59	-0.8
1,909,880	-		GFF1882	0.60	+0.6
1,909,880	-		GFF1882	0.60	+1.2
1,909,880	-		GFF1882	0.60	-1.1
1,909,882	+		GFF1882	0.60	-0.7
1,909,882	+		GFF1882	0.60	+0.0
1,909,882	+		GFF1882	0.60	-0.8
1,909,882	+		GFF1882	0.60	+0.6
1,909,882	+		GFF1882	0.60	-0.3
1,909,882	+		GFF1882	0.60	-1.6
1,909,882	+		GFF1882	0.60	-0.5
1,909,882	+		GFF1882	0.60	-0.8
1,909,882	+		GFF1882	0.60	+0.5
1,909,882	+		GFF1882	0.60	+0.7
1,909,882	+		GFF1882	0.60	-0.7
1,909,882	+		GFF1882	0.60	+0.1
1,909,882	+		GFF1882	0.60	-0.7
1,909,885	-		GFF1882	0.60	-2.3
1,909,885	-		GFF1882	0.60	-0.4
1,909,885	-		GFF1882	0.60	-0.0
1,909,885	-		GFF1882	0.60	-1.8
1,909,885	-		GFF1882	0.60	+0.5
1,909,885	-		GFF1882	0.60	+0.0
1,909,885	-		GFF1882	0.60	-2.3
1,909,887	+		GFF1882	0.60	+0.9
1,909,887	+		GFF1882	0.60	-0.4
1,909,887	+		GFF1882	0.60	-2.1
1,909,887	+		GFF1882	0.60	-1.5
1,909,887	+		GFF1882	0.60	-0.1
1,909,887	+		GFF1882	0.60	-0.2
1,909,887	+		GFF1882	0.60	+0.9
1,909,887	+		GFF1882	0.60	-0.6
1,909,890	-		GFF1882	0.60	-1.0
1,909,890	-		GFF1882	0.60	-0.5
1,909,890	-		GFF1882	0.60	-0.3
1,909,890	-		GFF1882	0.60	-0.6
1,909,895	-		GFF1882	0.60	+1.0
1,909,895	-		GFF1882	0.60	-0.4
1,909,895	-		GFF1882	0.60	+0.0
1,909,895	-		GFF1882	0.60	+0.8
1,909,901	+		GFF1882	0.61	+0.8
1,909,937	-		GFF1882	0.63	+0.5
1,909,941	+		GFF1882	0.63	-1.5
1,909,941	+		GFF1882	0.63	-0.9
1,909,941	+		GFF1882	0.63	+0.2
1,909,949	-		GFF1882	0.64	-0.1
1,909,956	-		GFF1882	0.64	-0.9
1,909,956	-		GFF1882	0.64	-0.2
1,909,960	+		GFF1882	0.64	+1.1
1,909,960	+		GFF1882	0.64	+0.4
1,909,960	+		GFF1882	0.64	+0.1
1,909,968	-		GFF1882	0.65	+0.7
1,909,968	-		GFF1882	0.65	+0.7
1,909,968	-		GFF1882	0.65	-1.8
1,909,968	-		GFF1882	0.65	-0.6
1,909,968	-		GFF1882	0.65	-0.0
1,909,973	-		GFF1882	0.65	-0.7
1,910,008	+		GFF1882	0.67	+1.1
1,910,011	-		GFF1882	0.68	-1.4
1,910,020	+		GFF1882	0.68	-1.1
1,910,020	+		GFF1882	0.68	-0.4
1,910,050	+		GFF1882	0.70	-0.8
1,910,058	-		GFF1882	0.70	+0.1
1,910,079	+		GFF1882	0.72	-1.8
1,910,118	-		GFF1882	0.74	-0.1
1,910,120	+		GFF1882	0.74	+0.1
1,910,120	+		GFF1882	0.74	-0.9
1,910,120	+		GFF1882	0.74	-0.3
1,910,120	+		GFF1882	0.74	-1.0
1,910,120	+		GFF1882	0.74	+0.7
1,910,128	-		GFF1882	0.75	-0.2
1,910,128	-		GFF1882	0.75	-1.0
1,910,145	+		GFF1882	0.76	-1.2
1,910,153	-		GFF1882	0.76	+0.1
1,910,153	-		GFF1882	0.76	-2.0
1,910,208	+		GFF1882	0.80	-0.4
1,910,220	+		GFF1882	0.80	+0.0
1,910,220	+		GFF1882	0.80	+0.4
1,910,228	-		GFF1882	0.81	-0.0
1,910,228	-		GFF1882	0.81	-1.8
1,910,228	-		GFF1882	0.81	-0.3
1,910,228	-		GFF1882	0.81	-0.6
1,910,230	+		GFF1882	0.81	-1.7
1,910,230	+		GFF1882	0.81	-1.9
1,910,230	+		GFF1882	0.81	-0.4
1,910,233	-		GFF1882	0.81	+1.0
1,910,233	-		GFF1882	0.81	-1.2
1,910,250	-		GFF1882	0.82	-0.9
1,910,256	+		GFF1882	0.83	-0.7
1,910,256	-		GFF1882	0.83	+0.6
1,910,256	-		GFF1882	0.83	-0.3
1,910,269	-		GFF1882	0.83	-0.1
1,910,278	+		GFF1882	0.84	+1.1
1,910,373	-		GFF1882	0.90	-0.5
1,910,408	-				+0.9
1,910,437	-				-2.2
1,910,481	+				-2.0
1,910,487	+				-0.2
1,910,524	+				+0.4
1,910,564	+				-1.3
1,910,572	-				-2.2
1,910,578	-				+0.6
1,910,578	-				-0.4
1,910,578	-				-1.3
1,910,617	+				-1.6
1,910,623	-		GFF1883	0.14	-0.2
1,910,623	-		GFF1883	0.14	-0.5
1,910,630	+		GFF1883	0.19	-0.9
1,910,638	-		GFF1883	0.26	+0.4
1,910,653	+		GFF1883	0.37	+0.7
1,910,671	-		GFF1883	0.51	-0.9
1,910,675	+		GFF1883	0.54	+0.1
1,910,683	-		GFF1883	0.60	-0.3
1,910,698	+		GFF1883	0.72	-0.7
1,910,736	+				-0.7
1,910,758	-				+0.9
1,910,815	+				-0.3
1,910,834	+		GFF1884	0.12	-0.4
1,910,834	+		GFF1884	0.12	-0.9
1,910,856	+		GFF1884	0.18	+0.9
1,910,856	-		GFF1884	0.18	-0.7
1,910,897	+		GFF1884	0.29	-0.2
1,910,923	+		GFF1884	0.35	+0.9
1,910,928	+		GFF1884	0.37	-1.3
1,910,928	+		GFF1884	0.37	+0.4
1,910,928	+		GFF1884	0.37	-1.6
1,910,928	+		GFF1884	0.37	-0.2
1,910,928	+		GFF1884	0.37	+1.0
1,910,933	+		GFF1884	0.38	-1.6
1,910,933	+		GFF1884	0.38	+0.8
1,910,936	-		GFF1884	0.39	+0.0
1,910,936	-		GFF1884	0.39	-1.8
1,910,936	-		GFF1884	0.39	+0.4
1,910,936	-		GFF1884	0.39	-0.3
1,910,936	-		GFF1884	0.39	+0.3
1,910,945	+		GFF1884	0.41	+0.1
1,910,951	-		GFF1884	0.43	-0.1
1,910,967	+		GFF1884	0.47	-1.2
1,910,967	+		GFF1884	0.47	-0.2
1,910,967	+		GFF1884	0.47	-1.4
1,910,967	+		GFF1884	0.47	-0.9
1,910,972	+		GFF1884	0.48	+0.0
1,910,975	-		GFF1884	0.49	+0.3
1,910,975	-		GFF1884	0.49	-0.3
1,910,975	-		GFF1884	0.49	-1.4
1,911,002	+		GFF1884	0.56	-1.6
1,911,003	-		GFF1884	0.56	-2.0
1,911,003	-		GFF1884	0.56	+1.2
1,911,010	-		GFF1884	0.58	+1.5
1,911,025	-		GFF1884	0.62	-1.7
1,911,027	-		GFF1884	0.62	-1.4
1,911,030	+		GFF1884	0.63	+0.8
1,911,037	+		GFF1884	0.65	+0.1
1,911,045	-		GFF1884	0.67	-1.3
1,911,073	+		GFF1884	0.74	+0.2
1,911,103	+		GFF1884	0.82	-2.4
1,911,111	-		GFF1884	0.84	+0.9
1,911,111	-		GFF1884	0.84	-0.3
1,911,111	-		GFF1884	0.84	+0.2
1,911,127	+		GFF1884	0.89	-0.9
1,911,131	-		GFF1884	0.90	+0.0
1,911,132	+				+0.0
1,911,135	-				+0.3
1,911,142	+				-0.1
1,911,168	+				-0.6