Strain Fitness in Sphingobium sp. HT1-2 around GFF1868

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,894,249	-		GFF1866	0.87	-1.6
1,894,283	+				+0.1
1,894,293	+				-0.1
1,894,296	-				+1.0
1,894,301	-				+0.3
1,894,303	+				+0.1
1,894,303	+				+1.3
1,894,305	+				+0.4
1,894,306	-				-2.5
1,894,311	-				+0.8
1,894,313	-				+0.1
1,894,316	-				-0.9
1,894,331	-				+0.8
1,894,336	-				+0.1
1,894,343	+				+0.4
1,894,353	+				+0.5
1,894,359	+				-2.7
1,894,359	+				-0.4
1,894,359	+				-0.3
1,894,359	+				+1.1
1,894,362	-				+2.2
1,894,362	-				-0.3
1,894,367	-				+0.7
1,894,367	-				-2.5
1,894,367	-				+1.0
1,894,367	-				-0.2
1,894,369	-				-0.9
1,894,388	+				+0.4
1,894,388	+				+0.2
1,894,388	+				+0.1
1,894,388	+				-1.1
1,894,396	-				-0.2
1,894,396	-				-0.9
1,894,399	+				-0.1
1,894,405	-				+1.2
1,894,405	-				-0.3
1,894,405	-				+0.5
1,894,407	-				-0.2
1,894,429	+				+0.7
1,894,429	+				+1.4
1,894,449	+				-1.1
1,894,454	+				-2.5
1,894,454	+				+1.0
1,894,459	+				+0.6
1,894,459	+				+0.5
1,894,459	+				-0.3
1,894,462	-				-0.3
1,894,467	-		GFF1867	0.10	-0.6
1,894,467	-		GFF1867	0.10	-0.5
1,894,467	-		GFF1867	0.10	-0.6
1,894,469	+		GFF1867	0.10	-1.7
1,894,469	+		GFF1867	0.10	-1.0
1,894,474	-		GFF1867	0.11	+0.4
1,894,517	+		GFF1867	0.17	-0.3
1,894,525	-		GFF1867	0.18	-0.2
1,894,531	-		GFF1867	0.19	+0.3
1,894,541	+		GFF1867	0.20	-0.4
1,894,583	+		GFF1867	0.25	-0.9
1,894,593	+		GFF1867	0.27	+1.8
1,894,593	+		GFF1867	0.27	-1.3
1,894,598	+		GFF1867	0.27	-1.5
1,894,598	+		GFF1867	0.27	-1.4
1,894,598	+		GFF1867	0.27	-0.2
1,894,598	+		GFF1867	0.27	-0.5
1,894,608	+		GFF1867	0.29	-0.0
1,894,616	-		GFF1867	0.30	-1.6
1,894,627	-		GFF1867	0.31	-1.0
1,894,647	+		GFF1867	0.34	-0.6
1,894,679	+		GFF1867	0.38	+0.2
1,894,684	-		GFF1867	0.39	-0.7
1,894,697	+		GFF1867	0.40	-0.1
1,894,705	-		GFF1867	0.42	-0.2
1,894,705	-		GFF1867	0.42	+0.8
1,894,708	+		GFF1867	0.42	+0.2
1,894,710	-		GFF1867	0.42	+0.2
1,894,716	-		GFF1867	0.43	+0.2
1,894,716	-		GFF1867	0.43	-0.9
1,894,729	-		GFF1867	0.45	-0.8
1,894,731	+		GFF1867	0.45	-0.2
1,894,731	+		GFF1867	0.45	-0.1
1,894,731	+		GFF1867	0.45	-1.7
1,894,731	+		GFF1867	0.45	-0.5
1,894,731	+		GFF1867	0.45	+0.5
1,894,731	+		GFF1867	0.45	+0.4
1,894,739	-		GFF1867	0.46	-1.7
1,894,739	-		GFF1867	0.46	-0.5
1,894,739	-		GFF1867	0.46	+0.7
1,894,739	-		GFF1867	0.46	+0.7
1,894,739	-		GFF1867	0.46	-0.1
1,894,739	-		GFF1867	0.46	-0.5
1,894,739	-		GFF1867	0.46	+0.3
1,894,762	-		GFF1867	0.49	+0.1
1,894,771	+		GFF1867	0.50	+0.6
1,894,771	+		GFF1867	0.50	-1.1
1,894,771	+		GFF1867	0.50	+0.2
1,894,771	+		GFF1867	0.50	-0.6
1,894,771	+		GFF1867	0.50	+0.2
1,894,771	+		GFF1867	0.50	+1.1
1,894,771	+		GFF1867	0.50	-1.0
1,894,773	-		GFF1867	0.50	-0.2
1,894,779	-		GFF1867	0.51	+0.6
1,894,779	-		GFF1867	0.51	+0.4
1,894,799	+		GFF1867	0.54	+0.4
1,894,799	+		GFF1867	0.54	-1.3
1,894,799	+		GFF1867	0.54	+0.2
1,894,799	+		GFF1867	0.54	+0.6
1,894,799	+		GFF1867	0.54	-1.3
1,894,799	+		GFF1867	0.54	-2.9
1,894,799	+		GFF1867	0.54	-1.0
1,894,799	+		GFF1867	0.54	-0.0
1,894,799	+		GFF1867	0.54	+0.1
1,894,799	+		GFF1867	0.54	-0.4
1,894,799	+		GFF1867	0.54	-0.2
1,894,799	+		GFF1867	0.54	+0.5
1,894,799	+		GFF1867	0.54	-0.0
1,894,807	-		GFF1867	0.55	-0.8
1,894,807	-		GFF1867	0.55	+0.0
1,894,807	-		GFF1867	0.55	-0.1
1,894,807	-		GFF1867	0.55	-0.2
1,894,807	-		GFF1867	0.55	-0.9
1,894,807	-		GFF1867	0.55	-1.8
1,894,807	-		GFF1867	0.55	-1.6
1,894,807	-		GFF1867	0.55	+0.1
1,894,807	-		GFF1867	0.55	+1.6
1,894,807	-		GFF1867	0.55	+1.1
1,894,807	-		GFF1867	0.55	+0.6
1,894,807	-		GFF1867	0.55	-0.1
1,894,807	-		GFF1867	0.55	+0.8
1,894,807	-		GFF1867	0.55	-1.4
1,894,807	-		GFF1867	0.55	-0.9
1,894,807	-		GFF1867	0.55	-0.4
1,894,807	-		GFF1867	0.55	-0.5
1,894,807	-		GFF1867	0.55	-1.5
1,894,807	-		GFF1867	0.55	+0.9
1,894,807	-		GFF1867	0.55	+1.0
1,894,807	-		GFF1867	0.55	+0.7
1,894,807	-		GFF1867	0.55	+0.0
1,894,807	-		GFF1867	0.55	-1.0
1,894,807	-		GFF1867	0.55	+0.0
1,894,807	-		GFF1867	0.55	+0.9
1,894,814	+		GFF1867	0.56	-0.3
1,894,814	+		GFF1867	0.56	+0.3
1,894,822	-		GFF1867	0.57	-1.0
1,894,827	-		GFF1867	0.58	-2.0
1,894,837	-		GFF1867	0.59	-0.7
1,894,845	+		GFF1867	0.60	+0.1
1,894,845	+		GFF1867	0.60	+0.9
1,894,845	+		GFF1867	0.60	+0.1
1,894,852	+		GFF1867	0.61	+0.0
1,894,852	+		GFF1867	0.61	-0.8
1,894,852	+		GFF1867	0.61	+1.1
1,894,853	-		GFF1867	0.61	-0.8
1,894,853	-		GFF1867	0.61	-1.4
1,894,853	-		GFF1867	0.61	-1.2
1,894,853	-		GFF1867	0.61	-0.3
1,894,860	-		GFF1867	0.62	-0.9
1,894,860	-		GFF1867	0.62	-1.7
1,894,860	-		GFF1867	0.62	+1.2
1,894,860	-		GFF1867	0.62	-0.8
1,894,860	-		GFF1867	0.62	+0.0
1,894,860	-		GFF1867	0.62	-0.1
1,894,860	-		GFF1867	0.62	+0.6
1,894,860	-		GFF1867	0.62	+1.2
1,894,860	-		GFF1867	0.62	+0.8
1,894,863	-		GFF1867	0.62	-0.6
1,894,913	-		GFF1867	0.69	-0.1
1,894,919	+		GFF1867	0.70	-0.3
1,894,919	+		GFF1867	0.70	-0.6
1,894,927	-		GFF1867	0.71	-0.9
1,894,927	-		GFF1867	0.71	-1.2
1,894,934	-		GFF1867	0.72	+1.7
1,894,937	+		GFF1867	0.72	-0.8
1,894,937	+		GFF1867	0.72	+0.1
1,894,937	+		GFF1867	0.72	+0.1
1,894,937	+		GFF1867	0.72	-0.8
1,894,937	+		GFF1867	0.72	+0.5
1,894,945	-		GFF1867	0.73	+0.8
1,894,945	-		GFF1867	0.73	-0.4
1,894,945	-		GFF1867	0.73	-0.0
1,894,945	-		GFF1867	0.73	-0.9
1,894,945	-		GFF1867	0.73	+0.0
1,894,964	+		GFF1867	0.76	-0.2
1,894,978	+		GFF1867	0.77	-1.4
1,894,990	+		GFF1867	0.79	+1.0
1,894,996	-		GFF1867	0.80	+1.3
1,894,998	-		GFF1867	0.80	+0.3
1,895,003	-		GFF1867	0.81	+0.1
1,895,053	+		GFF1867	0.87	-0.8
1,895,063	-		GFF1867	0.89	-0.3
1,895,063	-		GFF1867	0.89	-0.4
1,895,064	-		GFF1867	0.89	-0.2
1,895,064	-		GFF1867	0.89	+0.4
1,895,068	-		GFF1867	0.89	-0.8
1,895,073	-				-0.7
1,895,166	+				-0.5
1,895,174	-				+0.3
1,895,175	-				+0.7
1,895,186	+				-0.7
1,895,186	+				-0.3
1,895,193	+				-0.9
1,895,193	+				-1.0
1,895,194	-				-1.1
1,895,201	-				+0.7
1,895,204	+				-1.5
1,895,211	-				-1.1
1,895,211	-				-0.4
1,895,212	-				-0.3
1,895,212	-				+1.4
1,895,212	-				-2.2
1,895,230	-				+0.4
1,895,230	-				-0.4
1,895,230	-				-2.1
1,895,243	+				+0.6
1,895,251	-				+0.3
1,895,251	-				-0.7
1,895,251	-				-0.9
1,895,251	-				+0.8
1,895,251	-				+0.4
1,895,254	+				+0.7
1,895,286	-				+0.2
1,895,291	+				-0.7
1,895,291	+				-1.7
1,895,291	+				-0.2
1,895,291	+				-1.5
1,895,291	+				-0.5
1,895,291	+				+0.3
1,895,291	+				-0.6
1,895,291	+				-1.6
1,895,294	-				-0.3
1,895,299	-				+0.2
1,895,299	-				-0.3
1,895,299	-				-0.8
1,895,299	-				+0.3
1,895,299	-				-1.6
1,895,304	+				-0.4
1,895,311	+				-1.3
1,895,311	+				-0.0
1,895,315	+				+0.8
1,895,316	+				-0.9
1,895,319	-				-0.1
1,895,323	-				-0.6
1,895,324	-				-1.2
1,895,332	+				-0.9
1,895,366	+		GFF1868	0.12	-1.6
1,895,398	+		GFF1868	0.15	+0.0
1,895,398	+		GFF1868	0.15	-0.7
1,895,421	+		GFF1868	0.18	-1.2
1,895,426	-		GFF1868	0.18	+0.9
1,895,440	-		GFF1868	0.19	-0.6
1,895,440	-		GFF1868	0.19	+0.3
1,895,472	+		GFF1868	0.23	+0.1
1,895,472	+		GFF1868	0.23	-0.1
1,895,472	+		GFF1868	0.23	+0.5
1,895,473	-		GFF1868	0.23	+0.7
1,895,500	-		GFF1868	0.25	+1.2
1,895,500	-		GFF1868	0.25	+0.7
1,895,513	+		GFF1868	0.27	-1.8
1,895,513	+		GFF1868	0.27	+0.4
1,895,521	-		GFF1868	0.28	-1.2
1,895,531	-		GFF1868	0.29	-1.4
1,895,544	+		GFF1868	0.30	-1.6
1,895,544	+		GFF1868	0.30	-2.0
1,895,544	+		GFF1868	0.30	-0.9
1,895,544	+		GFF1868	0.30	+0.9
1,895,551	-		GFF1868	0.31	-0.2
1,895,552	+		GFF1868	0.31	+0.8
1,895,552	+		GFF1868	0.31	+0.5
1,895,552	-		GFF1868	0.31	-0.4
1,895,552	-		GFF1868	0.31	+0.4
1,895,552	-		GFF1868	0.31	+1.7
1,895,552	-		GFF1868	0.31	+0.5
1,895,572	-		GFF1868	0.33	-0.1
1,895,577	+		GFF1868	0.33	-0.2
1,895,612	+		GFF1868	0.37	+0.7
1,895,612	+		GFF1868	0.37	-0.3
1,895,633	+		GFF1868	0.39	-0.4
1,895,633	+		GFF1868	0.39	+0.1
1,895,636	-		GFF1868	0.39	-0.7
1,895,636	-		GFF1868	0.39	-1.4
1,895,636	-		GFF1868	0.39	-1.5
1,895,641	-		GFF1868	0.40	+0.3
1,895,641	-		GFF1868	0.40	-0.2
1,895,641	-		GFF1868	0.40	+1.2
1,895,655	-		GFF1868	0.41	-1.0
1,895,655	-		GFF1868	0.41	+0.6
1,895,657	+		GFF1868	0.41	+0.6
1,895,665	-		GFF1868	0.42	+0.8
1,895,681	+		GFF1868	0.44	-1.8
1,895,767	+		GFF1868	0.52	-0.6
1,895,768	-		GFF1868	0.52	+0.4
1,895,775	-		GFF1868	0.53	+0.8
1,895,775	-		GFF1868	0.53	-1.7
1,895,827	-		GFF1868	0.58	+1.2
1,895,867	+		GFF1868	0.62	+0.2
1,895,868	-		GFF1868	0.63	-1.0
1,895,875	-		GFF1868	0.63	-1.1
1,895,879	+		GFF1868	0.64	+0.9
1,895,880	-		GFF1868	0.64	-0.0
1,895,884	+		GFF1868	0.64	+0.2
1,895,894	+		GFF1868	0.65	-1.8
1,895,902	+		GFF1868	0.66	-0.1
1,895,902	+		GFF1868	0.66	+0.4
1,895,909	+		GFF1868	0.67	-0.1
1,895,909	-		GFF1868	0.67	-0.7
1,895,909	-		GFF1868	0.67	-0.7
1,895,910	+		GFF1868	0.67	-0.2
1,895,910	-		GFF1868	0.67	-1.7
1,895,936	-		GFF1868	0.69	+0.2
1,895,939	+		GFF1868	0.70	+0.5
1,895,939	+		GFF1868	0.70	-1.1
1,895,948	+		GFF1868	0.71	+1.6
1,895,948	+		GFF1868	0.71	-1.7
1,895,948	+		GFF1868	0.71	-2.1
1,895,948	+		GFF1868	0.71	+0.1
1,895,948	+		GFF1868	0.71	+0.1
1,895,948	+		GFF1868	0.71	-1.6
1,895,948	+		GFF1868	0.71	-1.0
1,895,948	+		GFF1868	0.71	+0.2
1,895,948	+		GFF1868	0.71	+0.1
1,895,948	+		GFF1868	0.71	+0.3
1,895,948	+		GFF1868	0.71	-0.5
1,895,956	-		GFF1868	0.71	-0.6
1,895,956	-		GFF1868	0.71	+0.1
1,895,956	-		GFF1868	0.71	-2.0
1,895,956	-		GFF1868	0.71	-1.7
1,895,956	-		GFF1868	0.71	-0.6
1,895,956	-		GFF1868	0.71	-0.0
1,895,956	-		GFF1868	0.71	-1.8
1,895,956	-		GFF1868	0.71	+1.2
1,895,959	-		GFF1868	0.72	-0.7
1,895,961	-		GFF1868	0.72	-1.6
1,895,963	+		GFF1868	0.72	+1.0
1,895,970	+		GFF1868	0.73	-0.6
1,895,973	+		GFF1868	0.73	+0.4
1,895,978	+		GFF1868	0.74	-0.7
1,895,978	+		GFF1868	0.74	-0.2
1,895,978	+		GFF1868	0.74	-0.6
1,895,986	+		GFF1868	0.74	+1.2
1,895,986	+		GFF1868	0.74	+1.2
1,895,986	+		GFF1868	0.74	-0.2
1,895,986	+		GFF1868	0.74	-0.5
1,895,986	-		GFF1868	0.74	-0.1
1,895,991	-		GFF1868	0.75	+0.6
1,895,994	-		GFF1868	0.75	-1.0
1,896,000	-		GFF1868	0.76	+0.8
1,896,054	+		GFF1868	0.81	-0.9
1,896,054	+		GFF1868	0.81	-0.5
1,896,057	-		GFF1868	0.82	-0.1
1,896,064	-		GFF1868	0.82	-1.4
1,896,065	+		GFF1868	0.82	-0.0
1,896,072	+		GFF1868	0.83	-0.2
1,896,077	+		GFF1868	0.84	-0.8
1,896,088	+		GFF1868	0.85	-0.0
1,896,090	+		GFF1868	0.85	+0.8
1,896,090	+		GFF1868	0.85	-1.5
1,896,090	+		GFF1868	0.85	-0.0
1,896,092	+		GFF1868	0.85	-0.1
1,896,095	+		GFF1868	0.85	+0.5
1,896,098	-		GFF1868	0.86	+0.8
1,896,156	-				+0.4
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1,896,182	+				-1.0
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1,896,182	+				-0.8
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1,896,190	-				-0.5
1,896,190	-				-0.1
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1,896,190	-				+1.1
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1,896,190	-				-0.9
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