Strain Fitness in Sphingobium sp. HT1-2 around GFF1825

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,844,416	+		GFF1823	0.80	-0.3
1,844,442	-		GFF1823	0.82	+1.0
1,844,452	+		GFF1823	0.83	-0.1
1,844,452	+		GFF1823	0.83	+1.4
1,844,458	-		GFF1823	0.83	-0.8
1,844,460	-		GFF1823	0.84	-1.0
1,844,467	-		GFF1823	0.84	-0.5
1,844,471	-		GFF1823	0.85	+0.6
1,844,485	+		GFF1823	0.86	-0.8
1,844,511	-		GFF1823	0.88	-1.3
1,844,511	-		GFF1823	0.88	-1.3
1,844,519	+		GFF1823	0.89	-1.1
1,844,522	+		GFF1823	0.89	-0.7
1,844,530	-				+0.4
1,844,550	+				-1.4
1,844,550	+				-0.9
1,844,550	+				+0.6
1,844,550	+				+0.1
1,844,550	+				-2.4
1,844,550	+				-1.3
1,844,558	-				-0.2
1,844,558	-				+1.2
1,844,558	-				-0.5
1,844,558	-				+1.2
1,844,558	-				-0.6
1,844,558	-				-1.2
1,844,558	-				+0.8
1,844,558	-				+0.1
1,844,572	+				-0.7
1,844,584	+				-0.4
1,844,590	-				-2.3
1,844,626	+				-0.6
1,844,659	+				-0.9
1,844,673	+				+0.3
1,844,673	-				+0.2
1,844,684	-				-1.0
1,844,684	-				-2.1
1,844,688	-				+1.0
1,844,703	+				-1.7
1,844,733	+				-1.1
1,844,769	-				-1.4
1,844,774	-				+0.8
1,844,774	-				+1.4
1,844,785	+				+0.8
1,844,785	+				+0.6
1,844,785	+				+0.2
1,844,785	-				+1.1
1,844,793	-				-1.2
1,844,795	+				-1.7
1,844,795	-				-2.0
1,844,818	-				+0.1
1,844,822	+				+0.5
1,844,826	-				-1.2
1,844,858	-				+0.3
1,844,860	+				-0.0
1,844,887	+				-1.0
1,844,934	-		GFF1824	0.18	-2.0
1,844,936	+		GFF1824	0.18	-1.4
1,844,964	-		GFF1824	0.23	-0.8
1,844,977	+		GFF1824	0.25	+0.7
1,844,977	+		GFF1824	0.25	-0.7
1,844,987	+		GFF1824	0.27	-0.3
1,844,987	+		GFF1824	0.27	-1.0
1,844,987	+		GFF1824	0.27	+0.1
1,844,987	+		GFF1824	0.27	-1.1
1,844,987	+		GFF1824	0.27	-0.4
1,844,987	+		GFF1824	0.27	-0.5
1,844,987	+		GFF1824	0.27	-1.0
1,844,987	+		GFF1824	0.27	-2.7
1,844,987	+		GFF1824	0.27	+0.8
1,844,987	+		GFF1824	0.27	-0.8
1,844,995	-		GFF1824	0.28	+0.1
1,844,995	-		GFF1824	0.28	-0.6
1,844,995	-		GFF1824	0.28	-0.6
1,844,995	-		GFF1824	0.28	-0.6
1,844,998	+		GFF1824	0.29	+0.8
1,845,018	+		GFF1824	0.32	-1.4
1,845,029	-		GFF1824	0.34	-0.0
1,845,045	+		GFF1824	0.37	+0.1
1,845,051	+		GFF1824	0.38	+0.5
1,845,055	+		GFF1824	0.38	-1.7
1,845,116	-		GFF1824	0.49	+0.2
1,845,173	+		GFF1824	0.58	+0.3
1,845,188	-		GFF1824	0.61	+0.7
1,845,199	+		GFF1824	0.63	-1.0
1,845,207	-		GFF1824	0.64	+0.1
1,845,207	-		GFF1824	0.64	-0.8
1,845,264	+		GFF1824	0.74	+1.0
1,845,304	+		GFF1824	0.80	+0.5
1,845,310	+		GFF1824	0.81	+0.8
1,845,324	+		GFF1824	0.84	-1.2
1,845,333	+		GFF1824	0.85	-0.3
1,845,338	+		GFF1824	0.86	-0.0
1,845,338	+		GFF1824	0.86	-1.4
1,845,338	+		GFF1824	0.86	-1.3
1,845,341	-		GFF1824	0.87	+0.2
1,845,341	-		GFF1824	0.87	+1.0
1,845,346	+		GFF1824	0.87	-1.2
1,845,346	-		GFF1824	0.87	-0.5
1,845,347	-		GFF1824	0.88	-0.7
1,845,354	-		GFF1824	0.89	-1.7
1,845,354	-		GFF1824	0.89	-1.5
1,845,356	+		GFF1824	0.89	-0.3
1,845,362	-				-1.2
1,845,364	-				+0.3
1,845,377	+				-0.5
1,845,437	+				-0.2
1,845,437	+				+1.1
1,845,445	-				-0.2
1,845,447	-				+0.7
1,845,455	-				+0.5
1,845,458	-				-1.0
1,845,460	+				-0.7
1,845,468	-				+0.8
1,845,470	+				-2.2
1,845,470	+				+1.1
1,845,470	+				+0.2
1,845,478	-				-0.7
1,845,479	+				-0.3
1,845,480	+				-0.9
1,845,485	+				-0.7
1,845,488	-		GFF1825	0.10	-0.4
1,845,488	-		GFF1825	0.10	-0.6
1,845,513	-		GFF1825	0.14	-1.8
1,845,513	-		GFF1825	0.14	+0.3
1,845,524	-		GFF1825	0.15	-2.4
1,845,524	-		GFF1825	0.15	-0.5
1,845,543	+		GFF1825	0.18	-0.3
1,845,543	+		GFF1825	0.18	-0.2
1,845,543	+		GFF1825	0.18	+0.4
1,845,551	-		GFF1825	0.19	-0.3
1,845,551	-		GFF1825	0.19	-1.5
1,845,551	-		GFF1825	0.19	-1.1
1,845,556	+		GFF1825	0.20	+1.0
1,845,556	+		GFF1825	0.20	-1.7
1,845,556	+		GFF1825	0.20	+0.2
1,845,556	+		GFF1825	0.20	-0.3
1,845,556	+		GFF1825	0.20	+1.3
1,845,556	+		GFF1825	0.20	-0.5
1,845,556	+		GFF1825	0.20	-1.5
1,845,556	+		GFF1825	0.20	-0.5
1,845,559	-		GFF1825	0.20	-2.0
1,845,564	-		GFF1825	0.21	-0.4
1,845,564	-		GFF1825	0.21	-0.9
1,845,564	-		GFF1825	0.21	+0.1
1,845,564	-		GFF1825	0.21	-1.0
1,845,564	-		GFF1825	0.21	-1.4
1,845,635	+		GFF1825	0.31	-0.9
1,845,643	-		GFF1825	0.32	+0.5
1,845,658	-		GFF1825	0.34	-0.3
1,845,668	+		GFF1825	0.35	+0.2
1,845,677	+		GFF1825	0.36	-1.9
1,845,677	+		GFF1825	0.36	-1.2
1,845,679	+		GFF1825	0.37	+0.8
1,845,743	+		GFF1825	0.46	-0.8
1,845,773	+		GFF1825	0.50	-0.6
1,845,781	-		GFF1825	0.51	-0.4
1,845,781	-		GFF1825	0.51	-1.2
1,845,794	+		GFF1825	0.53	-1.1
1,845,823	+		GFF1825	0.57	-0.0
1,845,823	+		GFF1825	0.57	-0.5
1,845,828	+		GFF1825	0.57	-1.1
1,845,828	+		GFF1825	0.57	-2.1
1,845,828	+		GFF1825	0.57	+0.0
1,845,828	+		GFF1825	0.57	+0.3
1,845,831	-		GFF1825	0.58	+1.0
1,845,831	-		GFF1825	0.58	-1.7
1,845,836	-		GFF1825	0.59	-0.7
1,845,867	-		GFF1825	0.63	-0.4
1,845,877	+		GFF1825	0.64	-0.8
1,845,926	-		GFF1825	0.71	+0.1
1,845,930	-		GFF1825	0.72	+0.4
1,845,934	-		GFF1825	0.72	+0.3
1,845,972	-		GFF1825	0.78	-1.5
1,845,972	-		GFF1825	0.78	-0.0
1,845,998	-		GFF1825	0.81	-0.9
1,846,030	-		GFF1825	0.86	-0.5
1,846,034	+		GFF1825	0.86	-1.6
1,846,034	+		GFF1825	0.86	-0.2
1,846,042	-		GFF1825	0.87	-0.1
1,846,042	-		GFF1825	0.87	-0.4
1,846,047	-		GFF1825	0.88	-0.7
1,846,048	-		GFF1825	0.88	+0.0
1,846,067	-				+0.1
1,846,087	-				-0.3
1,846,087	-				+0.8
1,846,087	-				+2.2
1,846,106	-				+0.3
1,846,126	+				-1.2
1,846,129	-				-0.6
1,846,147	+				-2.5
1,846,161	-				-0.3
1,846,187	-				+0.2
1,846,193	-				-0.7
1,846,197	-				+0.1
1,846,222	-				-1.7
1,846,229	+				+1.1
1,846,229	+				+0.0
1,846,229	+				-0.9
1,846,229	+				-1.4
1,846,229	+				-0.6
1,846,237	-				-0.0
1,846,237	-				-1.0
1,846,237	-				+0.4
1,846,237	-				-0.4
1,846,309	+				-2.0
1,846,309	+				-1.0
1,846,309	+				+0.5
1,846,309	+				+0.1
1,846,309	+				-0.5
1,846,309	+				+0.5
1,846,309	+				-0.4
1,846,309	+				-1.4
1,846,309	+				-0.1
1,846,309	+				-0.9
1,846,309	+				-0.7
1,846,309	+				-0.0
1,846,309	+				+0.0
1,846,309	+				+0.9
1,846,309	+				+1.3
1,846,309	+				-0.6
1,846,309	+				+0.4
1,846,309	+				-1.1
1,846,309	+				+1.4
1,846,309	+				-2.0
1,846,317	-				-1.2
1,846,317	-				-1.2
1,846,317	-				-1.4
1,846,317	-				-0.6
1,846,317	-				+0.1
1,846,317	-				-1.2
1,846,317	-				+1.1
1,846,317	-				-1.0
1,846,317	-				+0.7
1,846,317	-				+0.0
1,846,317	-				-0.2
1,846,319	+				-1.1
1,846,319	+				-0.6
1,846,327	-				-0.4
1,846,329	-				-0.5
1,846,329	-				+0.3
1,846,329	-				+1.0
1,846,329	-				-0.7
1,846,329	-				+0.5
1,846,329	-				+1.3
1,846,330	+				-2.2
1,846,330	+				+0.2
1,846,338	+				-0.9
1,846,338	-				+0.7
1,846,338	-				-0.2
1,846,340	+				+0.6
1,846,345	+				+0.2
1,846,345	+				-2.3
1,846,346	-				-1.5
1,846,353	-				-0.5
1,846,353	-				+0.0
1,846,373	+				+0.6
1,846,373	+				+0.6
1,846,381	-				+0.1
1,846,439	-		GFF1826	0.12	-0.0
1,846,475	+		GFF1826	0.17	+0.6
1,846,483	+		GFF1826	0.18	+1.1
1,846,483	-		GFF1826	0.18	-1.3
1,846,496	+		GFF1826	0.20	-0.7
1,846,504	-		GFF1826	0.21	+1.0
1,846,504	-		GFF1826	0.21	-2.5
1,846,509	-		GFF1826	0.22	-1.3
1,846,509	-		GFF1826	0.22	+0.7
1,846,514	-		GFF1826	0.23	-0.3
1,846,532	-		GFF1826	0.26	-0.1
1,846,543	+		GFF1826	0.27	+0.3
1,846,543	+		GFF1826	0.27	-1.2
1,846,543	+		GFF1826	0.27	+0.3
1,846,543	+		GFF1826	0.27	-1.0
1,846,543	+		GFF1826	0.27	-0.5
1,846,543	+		GFF1826	0.27	-0.0
1,846,551	-		GFF1826	0.28	-1.1
1,846,551	-		GFF1826	0.28	-1.2
1,846,551	-		GFF1826	0.28	+1.1
1,846,551	-		GFF1826	0.28	-0.2
1,846,551	-		GFF1826	0.28	-1.0
1,846,566	-		GFF1826	0.31	+0.5
1,846,615	-		GFF1826	0.38	-0.8
1,846,625	-		GFF1826	0.40	-1.4
1,846,638	+		GFF1826	0.42	+0.7
1,846,646	+		GFF1826	0.43	-0.0
1,846,646	+		GFF1826	0.43	-0.0
1,846,647	-		GFF1826	0.43	+0.5
1,846,652	-		GFF1826	0.44	+0.4
1,846,654	-		GFF1826	0.44	-0.6
1,846,654	-		GFF1826	0.44	+0.5
1,846,654	-		GFF1826	0.44	-0.9
1,846,654	-		GFF1826	0.44	+0.1
1,846,663	-		GFF1826	0.45	+0.8
1,846,672	+		GFF1826	0.47	-1.4
1,846,688	+		GFF1826	0.49	-1.5
1,846,693	+		GFF1826	0.50	-1.7
1,846,695	-		GFF1826	0.50	+1.0
1,846,714	+		GFF1826	0.53	+1.0
1,846,714	-		GFF1826	0.53	+0.7
1,846,722	-		GFF1826	0.54	-0.5
1,846,722	-		GFF1826	0.54	+0.5
1,846,722	-		GFF1826	0.54	+1.4
1,846,726	-		GFF1826	0.55	-0.6
1,846,733	-		GFF1826	0.56	-1.4
1,846,736	-		GFF1826	0.57	-0.7
1,846,767	-		GFF1826	0.61	-0.8
1,846,774	+		GFF1826	0.62	-0.0
1,846,774	-		GFF1826	0.62	-1.8
1,846,786	+		GFF1826	0.64	-0.4
1,846,798	+		GFF1826	0.66	-1.2
1,846,808	-		GFF1826	0.67	-0.4
1,846,816	+		GFF1826	0.69	+1.0
1,846,816	+		GFF1826	0.69	-1.2
1,846,826	+		GFF1826	0.70	-1.7
1,846,839	-		GFF1826	0.72	+0.9
1,846,839	-		GFF1826	0.72	+0.4
1,846,843	+		GFF1826	0.73	-0.6
1,846,846	-		GFF1826	0.73	+0.7
1,846,846	-		GFF1826	0.73	-1.3
1,846,848	+		GFF1826	0.73	-0.3
1,846,851	-		GFF1826	0.74	+0.7
1,846,853	+		GFF1826	0.74	-1.0
1,846,853	+		GFF1826	0.74	-0.9
1,846,877	+		GFF1826	0.78	+0.6
1,846,924	-		GFF1826	0.85	-0.9
1,846,926	+		GFF1826	0.85	+0.5
1,846,927	-		GFF1826	0.85	-0.5
1,846,934	-		GFF1826	0.87	-2.8
1,846,934	-		GFF1826	0.87	-1.2
1,846,956	-		GFF1826	0.90	-0.4
1,846,989	+				+0.4
1,846,997	-				-0.1
1,847,004	+				-0.2
1,847,016	+				-1.4
1,847,016	+				+0.0
1,847,016	+				-0.8
1,847,016	+				-0.1
1,847,016	+				+0.9
1,847,016	+				-0.2
1,847,021	+				-0.5
1,847,024	-				+0.7
1,847,024	-				+0.6
1,847,024	-				-1.5
1,847,024	-				-0.7
1,847,024	-				+0.3
1,847,024	-				+0.6
1,847,024	-				+0.2
1,847,026	+				-2.5
1,847,026	+				-0.0
1,847,052	-				-1.0
1,847,054	-				+1.0
1,847,065	+				-1.3
1,847,065	+				-0.0
1,847,065	+				-1.5
1,847,065	+				+0.2
1,847,065	-				-0.2
1,847,073	+				-0.7
1,847,073	+				+0.4
1,847,073	-				-0.4
1,847,073	-				-0.7
1,847,075	+				+0.0
1,847,081	-				-1.9
1,847,087	+				-0.6
1,847,090	+				-1.8
1,847,090	+				-1.1