Strain Fitness in Sphingobium sp. HT1-2 around GFF1823

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,842,551	-		GFF1821	0.44	+0.4
1,842,551	-		GFF1821	0.44	-1.1
1,842,551	-		GFF1821	0.44	+0.4
1,842,555	+		GFF1821	0.45	-1.0
1,842,579	-		GFF1821	0.52	+1.4
1,842,594	-		GFF1821	0.55	+0.4
1,842,614	-		GFF1821	0.61	-0.4
1,842,632	-		GFF1821	0.65	-1.7
1,842,632	-		GFF1821	0.65	-2.2
1,842,642	+		GFF1821	0.68	+0.8
1,842,642	+		GFF1821	0.68	-0.2
1,842,644	+		GFF1821	0.68	-0.2
1,842,644	+		GFF1821	0.68	+0.3
1,842,644	+		GFF1821	0.68	+0.3
1,842,650	-		GFF1821	0.70	-0.1
1,842,650	-		GFF1821	0.70	-0.3
1,842,692	+		GFF1821	0.81	-0.2
1,842,700	-		GFF1821	0.83	+0.4
1,842,721	-		GFF1821	0.89	-0.7
1,842,731	+				+0.1
1,842,740	+				-0.1
1,842,740	-				+0.4
1,842,763	-				-0.5
1,842,777	+				+0.8
1,842,814	-				-0.8
1,842,822	+				+1.6
1,842,849	+		GFF1822	0.12	-0.3
1,842,899	+		GFF1822	0.18	-0.1
1,842,899	+		GFF1822	0.18	+0.2
1,842,907	-		GFF1822	0.19	-2.3
1,842,917	-		GFF1822	0.20	-0.9
1,842,927	+		GFF1822	0.22	+0.1
1,842,928	+		GFF1822	0.22	+0.8
1,842,955	+		GFF1822	0.25	+1.0
1,842,955	+		GFF1822	0.25	-2.0
1,842,958	-		GFF1822	0.26	-0.6
1,842,967	-		GFF1822	0.27	+0.6
1,842,989	+		GFF1822	0.30	-2.1
1,842,990	-		GFF1822	0.30	-1.7
1,842,994	+		GFF1822	0.30	-0.5
1,843,025	+		GFF1822	0.34	-0.8
1,843,030	+		GFF1822	0.35	+1.2
1,843,030	+		GFF1822	0.35	-1.5
1,843,033	-		GFF1822	0.35	-0.3
1,843,033	-		GFF1822	0.35	-0.2
1,843,033	-		GFF1822	0.35	+0.2
1,843,049	+		GFF1822	0.37	-1.3
1,843,049	+		GFF1822	0.37	+0.6
1,843,049	+		GFF1822	0.37	-1.0
1,843,057	-		GFF1822	0.38	+1.0
1,843,057	-		GFF1822	0.38	-1.1
1,843,057	-		GFF1822	0.38	-0.6
1,843,089	+		GFF1822	0.42	-1.1
1,843,120	+		GFF1822	0.46	+0.4
1,843,122	-		GFF1822	0.47	-0.2
1,843,124	+		GFF1822	0.47	+0.3
1,843,124	+		GFF1822	0.47	-1.6
1,843,147	+		GFF1822	0.50	-3.2
1,843,161	-		GFF1822	0.52	-0.1
1,843,164	-		GFF1822	0.52	-0.6
1,843,199	-		GFF1822	0.56	-0.9
1,843,201	+		GFF1822	0.57	+0.1
1,843,209	+		GFF1822	0.58	-1.6
1,843,218	+		GFF1822	0.59	+0.8
1,843,226	-		GFF1822	0.60	-1.3
1,843,231	+		GFF1822	0.61	-0.3
1,843,231	-		GFF1822	0.61	-0.0
1,843,250	+		GFF1822	0.63	-0.3
1,843,250	+		GFF1822	0.63	+0.2
1,843,250	+		GFF1822	0.63	-0.3
1,843,253	-		GFF1822	0.63	+0.5
1,843,255	+		GFF1822	0.64	-1.4
1,843,258	-		GFF1822	0.64	-0.2
1,843,263	-		GFF1822	0.65	-1.4
1,843,289	-		GFF1822	0.68	+1.8
1,843,295	+		GFF1822	0.69	-0.3
1,843,295	+		GFF1822	0.69	+1.4
1,843,303	-		GFF1822	0.70	-1.7
1,843,316	-		GFF1822	0.71	-0.6
1,843,318	+		GFF1822	0.72	-1.2
1,843,318	+		GFF1822	0.72	+0.1
1,843,318	+		GFF1822	0.72	+1.1
1,843,325	+		GFF1822	0.73	+0.3
1,843,326	-		GFF1822	0.73	-0.3
1,843,326	-		GFF1822	0.73	-0.1
1,843,331	-		GFF1822	0.73	-1.2
1,843,331	-		GFF1822	0.73	+0.1
1,843,331	-		GFF1822	0.73	-0.5
1,843,333	-		GFF1822	0.74	-0.3
1,843,333	-		GFF1822	0.74	+0.3
1,843,348	-		GFF1822	0.75	+0.7
1,843,366	+		GFF1822	0.78	-0.7
1,843,366	+		GFF1822	0.78	+0.3
1,843,366	+		GFF1822	0.78	+1.4
1,843,374	-		GFF1822	0.79	-0.2
1,843,374	-		GFF1822	0.79	+0.6
1,843,374	-		GFF1822	0.79	-0.3
1,843,374	-		GFF1822	0.79	+0.3
1,843,374	-		GFF1822	0.79	-1.2
1,843,402	+		GFF1822	0.82	+0.9
1,843,407	+		GFF1822	0.83	-0.6
1,843,410	-		GFF1822	0.83	-0.7
1,843,423	-		GFF1822	0.85	+0.2
1,843,443	+		GFF1822	0.88	+0.6
1,843,443	+		GFF1822	0.88	-0.9
1,843,443	+		GFF1822	0.88	+1.5
1,843,443	+		GFF1822	0.88	-0.2
1,843,443	+		GFF1822	0.88	+0.6
1,843,443	+		GFF1822	0.88	+0.3
1,843,443	+		GFF1822	0.88	-0.2
1,843,443	+		GFF1822	0.88	-1.4
1,843,443	+		GFF1822	0.88	+0.6
1,843,443	+		GFF1822	0.88	-0.4
1,843,443	+		GFF1822	0.88	-0.6
1,843,443	+		GFF1822	0.88	+0.2
1,843,443	+		GFF1822	0.88	+0.0
1,843,443	+		GFF1822	0.88	-0.5
1,843,443	+		GFF1822	0.88	+1.3
1,843,451	-		GFF1822	0.89	-0.3
1,843,451	-		GFF1822	0.89	+0.8
1,843,451	-		GFF1822	0.89	-1.3
1,843,451	-		GFF1822	0.89	-0.7
1,843,451	-		GFF1822	0.89	+0.8
1,843,451	-		GFF1822	0.89	-0.4
1,843,451	-		GFF1822	0.89	-0.7
1,843,451	-		GFF1822	0.89	-1.5
1,843,451	-		GFF1822	0.89	+1.1
1,843,451	-		GFF1822	0.89	+0.8
1,843,451	-		GFF1822	0.89	-0.5
1,843,451	-		GFF1822	0.89	-0.9
1,843,451	-		GFF1822	0.89	-0.4
1,843,451	-		GFF1822	0.89	-1.9
1,843,451	-		GFF1822	0.89	-0.4
1,843,486	-				-2.9
1,843,516	+				-1.6
1,843,516	+				+1.4
1,843,519	-				-1.4
1,843,524	-				-1.2
1,843,534	+				-0.6
1,843,534	+				-1.7
1,843,535	-				+0.9
1,843,549	+				-0.5
1,843,573	+				+0.6
1,843,628	-				-0.2
1,843,628	-				+0.8
1,843,688	-		GFF1823	0.13	+1.0
1,843,689	-		GFF1823	0.13	+0.9
1,843,701	+		GFF1823	0.14	-0.1
1,843,715	+		GFF1823	0.16	+0.0
1,843,736	+		GFF1823	0.18	-0.1
1,843,743	+		GFF1823	0.18	+0.4
1,843,743	+		GFF1823	0.18	-0.1
1,843,751	-		GFF1823	0.19	+0.9
1,843,761	+		GFF1823	0.20	+0.5
1,843,761	+		GFF1823	0.20	-0.1
1,843,761	+		GFF1823	0.20	-0.3
1,843,769	-		GFF1823	0.21	+0.3
1,843,780	-		GFF1823	0.22	-0.8
1,843,782	+		GFF1823	0.22	-0.3
1,843,782	+		GFF1823	0.22	-1.7
1,843,783	+		GFF1823	0.22	-1.2
1,843,784	+		GFF1823	0.22	-0.7
1,843,791	-		GFF1823	0.23	-2.2
1,843,792	-		GFF1823	0.23	+0.0
1,843,803	+		GFF1823	0.24	+0.6
1,843,811	-		GFF1823	0.24	+0.3
1,843,825	+		GFF1823	0.26	-0.3
1,843,843	+		GFF1823	0.27	-0.1
1,843,843	+		GFF1823	0.27	-1.6
1,843,846	-		GFF1823	0.28	-1.4
1,843,851	+		GFF1823	0.28	-1.5
1,843,851	-		GFF1823	0.28	-1.2
1,843,851	-		GFF1823	0.28	-1.4
1,843,851	-		GFF1823	0.28	-1.0
1,843,852	-		GFF1823	0.28	-0.5
1,843,866	+		GFF1823	0.29	-1.4
1,843,888	-		GFF1823	0.31	+0.2
1,843,889	-		GFF1823	0.32	-0.8
1,843,889	-		GFF1823	0.32	-1.6
1,843,914	+		GFF1823	0.34	-0.5
1,843,924	+		GFF1823	0.35	-0.3
1,843,962	+		GFF1823	0.38	-0.8
1,843,968	-		GFF1823	0.39	-0.3
1,843,968	-		GFF1823	0.39	-0.2
1,843,970	+		GFF1823	0.39	+0.9
1,843,970	-		GFF1823	0.39	+0.3
1,843,970	-		GFF1823	0.39	-0.0
1,844,026	+		GFF1823	0.44	+0.5
1,844,027	-		GFF1823	0.44	-0.4
1,844,033	+		GFF1823	0.45	-1.0
1,844,033	-		GFF1823	0.45	+0.0
1,844,058	+		GFF1823	0.47	-1.2
1,844,058	+		GFF1823	0.47	-0.6
1,844,062	+		GFF1823	0.47	+0.5
1,844,076	-		GFF1823	0.49	-1.5
1,844,095	+		GFF1823	0.50	+0.4
1,844,100	+		GFF1823	0.51	-3.1
1,844,100	+		GFF1823	0.51	-2.5
1,844,108	-		GFF1823	0.52	-1.2
1,844,120	+		GFF1823	0.53	-0.5
1,844,120	+		GFF1823	0.53	+0.3
1,844,120	+		GFF1823	0.53	-0.2
1,844,120	+		GFF1823	0.53	-1.4
1,844,120	+		GFF1823	0.53	+1.4
1,844,128	-		GFF1823	0.53	-1.3
1,844,128	-		GFF1823	0.53	+0.1
1,844,128	-		GFF1823	0.53	-0.6
1,844,128	-		GFF1823	0.53	+0.3
1,844,147	+		GFF1823	0.55	+0.1
1,844,154	+		GFF1823	0.56	+0.7
1,844,162	-		GFF1823	0.56	-1.3
1,844,164	+		GFF1823	0.57	+0.1
1,844,164	+		GFF1823	0.57	+0.0
1,844,171	+		GFF1823	0.57	-0.3
1,844,171	+		GFF1823	0.57	-0.4
1,844,172	-		GFF1823	0.57	-1.6
1,844,172	-		GFF1823	0.57	-0.7
1,844,179	-		GFF1823	0.58	+0.6
1,844,228	+		GFF1823	0.62	-0.7
1,844,241	-		GFF1823	0.64	-0.2
1,844,246	+		GFF1823	0.64	-0.7
1,844,246	+		GFF1823	0.64	+0.5
1,844,246	+		GFF1823	0.64	-0.2
1,844,246	+		GFF1823	0.64	-0.1
1,844,246	+		GFF1823	0.64	+0.6
1,844,246	+		GFF1823	0.64	+1.1
1,844,246	+		GFF1823	0.64	-0.1
1,844,254	-		GFF1823	0.65	-0.2
1,844,254	-		GFF1823	0.65	-0.3
1,844,254	-		GFF1823	0.65	+0.5
1,844,254	-		GFF1823	0.65	-0.6
1,844,254	-		GFF1823	0.65	+0.7
1,844,263	+		GFF1823	0.66	-0.8
1,844,271	-		GFF1823	0.66	+1.1
1,844,271	-		GFF1823	0.66	+0.6
1,844,271	-		GFF1823	0.66	+0.3
1,844,272	-		GFF1823	0.66	-1.0
1,844,316	+		GFF1823	0.71	+0.1
1,844,324	-		GFF1823	0.71	+0.5
1,844,324	-		GFF1823	0.71	-1.3
1,844,342	-		GFF1823	0.73	-0.5
1,844,369	+		GFF1823	0.75	-0.2
1,844,410	+		GFF1823	0.79	-0.0
1,844,410	+		GFF1823	0.79	-1.7
1,844,416	+		GFF1823	0.80	-0.3
1,844,442	-		GFF1823	0.82	+1.0
1,844,452	+		GFF1823	0.83	-0.1
1,844,452	+		GFF1823	0.83	+1.4
1,844,458	-		GFF1823	0.83	-0.8
1,844,460	-		GFF1823	0.84	-1.0
1,844,467	-		GFF1823	0.84	-0.5
1,844,471	-		GFF1823	0.85	+0.6
1,844,485	+		GFF1823	0.86	-0.8
1,844,511	-		GFF1823	0.88	-1.3
1,844,511	-		GFF1823	0.88	-1.3
1,844,519	+		GFF1823	0.89	-1.1
1,844,522	+		GFF1823	0.89	-0.7
1,844,530	-				+0.4
1,844,550	+				-1.4
1,844,550	+				-0.9
1,844,550	+				+0.6
1,844,550	+				+0.1
1,844,550	+				-2.4
1,844,550	+				-1.3
1,844,558	-				-0.2
1,844,558	-				+1.2
1,844,558	-				-0.5
1,844,558	-				+1.2
1,844,558	-				-0.6
1,844,558	-				-1.2
1,844,558	-				+0.8
1,844,558	-				+0.1
1,844,572	+				-0.7
1,844,584	+				-0.4
1,844,590	-				-2.3
1,844,626	+				-0.6
1,844,659	+				-0.9
1,844,673	+				+0.3
1,844,673	-				+0.2
1,844,684	-				-1.0
1,844,684	-				-2.1
1,844,688	-				+1.0
1,844,703	+				-1.7
1,844,733	+				-1.1
1,844,769	-				-1.4
1,844,774	-				+0.8
1,844,774	-				+1.4
1,844,785	+				+0.8
1,844,785	+				+0.6
1,844,785	+				+0.2
1,844,785	-				+1.1
1,844,793	-				-1.2
1,844,795	+				-1.7
1,844,795	-				-2.0
1,844,818	-				+0.1
1,844,822	+				+0.5
1,844,826	-				-1.2
1,844,858	-				+0.3
1,844,860	+				-0.0
1,844,887	+				-1.0
1,844,934	-		GFF1824	0.18	-2.0
1,844,936	+		GFF1824	0.18	-1.4
1,844,964	-		GFF1824	0.23	-0.8
1,844,977	+		GFF1824	0.25	+0.7
1,844,977	+		GFF1824	0.25	-0.7
1,844,987	+		GFF1824	0.27	-0.3
1,844,987	+		GFF1824	0.27	-1.0
1,844,987	+		GFF1824	0.27	+0.1
1,844,987	+		GFF1824	0.27	-1.1
1,844,987	+		GFF1824	0.27	-0.4
1,844,987	+		GFF1824	0.27	-0.5
1,844,987	+		GFF1824	0.27	-1.0
1,844,987	+		GFF1824	0.27	-2.7
1,844,987	+		GFF1824	0.27	+0.8
1,844,987	+		GFF1824	0.27	-0.8
1,844,995	-		GFF1824	0.28	+0.1
1,844,995	-		GFF1824	0.28	-0.6
1,844,995	-		GFF1824	0.28	-0.6
1,844,995	-		GFF1824	0.28	-0.6
1,844,998	+		GFF1824	0.29	+0.8
1,845,018	+		GFF1824	0.32	-1.4
1,845,029	-		GFF1824	0.34	-0.0
1,845,045	+		GFF1824	0.37	+0.1
1,845,051	+		GFF1824	0.38	+0.5
1,845,055	+		GFF1824	0.38	-1.7
1,845,116	-		GFF1824	0.49	+0.2
1,845,173	+		GFF1824	0.58	+0.3
1,845,188	-		GFF1824	0.61	+0.7
1,845,199	+		GFF1824	0.63	-1.0
1,845,207	-		GFF1824	0.64	+0.1
1,845,207	-		GFF1824	0.64	-0.8
1,845,264	+		GFF1824	0.74	+1.0
1,845,304	+		GFF1824	0.80	+0.5
1,845,310	+		GFF1824	0.81	+0.8
1,845,324	+		GFF1824	0.84	-1.2
1,845,333	+		GFF1824	0.85	-0.3
1,845,338	+		GFF1824	0.86	-0.0
1,845,338	+		GFF1824	0.86	-1.4
1,845,338	+		GFF1824	0.86	-1.3
1,845,341	-		GFF1824	0.87	+0.2
1,845,341	-		GFF1824	0.87	+1.0
1,845,346	+		GFF1824	0.87	-1.2
1,845,346	-		GFF1824	0.87	-0.5
1,845,347	-		GFF1824	0.88	-0.7
1,845,354	-		GFF1824	0.89	-1.7
1,845,354	-		GFF1824	0.89	-1.5
1,845,356	+		GFF1824	0.89	-0.3
1,845,362	-				-1.2
1,845,364	-				+0.3
1,845,377	+				-0.5
1,845,437	+				-0.2
1,845,437	+				+1.1
1,845,445	-				-0.2
1,845,447	-				+0.7
1,845,455	-				+0.5
1,845,458	-				-1.0
1,845,460	+				-0.7
1,845,468	-				+0.8
1,845,470	+				-2.2
1,845,470	+				+1.1
1,845,470	+				+0.2
1,845,478	-				-0.7
1,845,479	+				-0.3
1,845,480	+				-0.9
1,845,485	+				-0.7
1,845,488	-		GFF1825	0.10	-0.4
1,845,488	-		GFF1825	0.10	-0.6
1,845,513	-		GFF1825	0.14	-1.8
1,845,513	-		GFF1825	0.14	+0.3
1,845,524	-		GFF1825	0.15	-2.4
1,845,524	-		GFF1825	0.15	-0.5
1,845,543	+		GFF1825	0.18	-0.3
1,845,543	+		GFF1825	0.18	-0.2
1,845,543	+		GFF1825	0.18	+0.4
1,845,551	-		GFF1825	0.19	-0.3
1,845,551	-		GFF1825	0.19	-1.5
1,845,551	-		GFF1825	0.19	-1.1
1,845,556	+		GFF1825	0.20	+1.0
1,845,556	+		GFF1825	0.20	-1.7
1,845,556	+		GFF1825	0.20	+0.2
1,845,556	+		GFF1825	0.20	-0.3
1,845,556	+		GFF1825	0.20	+1.3
1,845,556	+		GFF1825	0.20	-0.5
1,845,556	+		GFF1825	0.20	-1.5
1,845,556	+		GFF1825	0.20	-0.5
1,845,559	-		GFF1825	0.20	-2.0
1,845,564	-		GFF1825	0.21	-0.4
1,845,564	-		GFF1825	0.21	-0.9
1,845,564	-		GFF1825	0.21	+0.1
1,845,564	-		GFF1825	0.21	-1.0
1,845,564	-		GFF1825	0.21	-1.4
1,845,635	+		GFF1825	0.31	-0.9