Strain Fitness in Sphingobium sp. HT1-2 around GFF1778

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,803,071	+		GFF1775	0.64	-0.6
1,803,079	-		GFF1775	0.65	-1.5
1,803,082	+		GFF1775	0.66	+0.4
1,803,082	+		GFF1775	0.66	-0.7
1,803,082	+		GFF1775	0.66	+0.4
1,803,082	+		GFF1775	0.66	+1.3
1,803,085	-		GFF1775	0.67	+0.6
1,803,090	-		GFF1775	0.68	+1.7
1,803,121	-		GFF1775	0.76	+0.2
1,803,129	+		GFF1775	0.78	-0.7
1,803,129	+		GFF1775	0.78	+1.3
1,803,137	-		GFF1775	0.80	-0.4
1,803,137	-		GFF1775	0.80	-0.2
1,803,137	-		GFF1775	0.80	-2.0
1,803,160	-		GFF1775	0.85	+0.5
1,803,205	-				+0.4
1,803,205	-				-1.0
1,803,216	+				-0.8
1,803,216	+				+1.1
1,803,216	+				-2.1
1,803,216	+				+1.0
1,803,216	+				-2.7
1,803,216	+				+0.2
1,803,216	-				+0.2
1,803,221	+				+0.1
1,803,221	+				+1.4
1,803,221	+				-0.5
1,803,224	-				-1.2
1,803,229	-				-0.6
1,803,229	-				+0.1
1,803,234	-				+0.3
1,803,246	+		GFF1776	0.14	-0.2
1,803,254	-		GFF1776	0.18	-1.1
1,803,263	-		GFF1776	0.22	-2.5
1,803,277	-		GFF1776	0.29	-0.6
1,803,289	+		GFF1776	0.35	-0.5
1,803,305	+		GFF1776	0.43	-0.6
1,803,320	+		GFF1776	0.50	-0.2
1,803,328	+		GFF1776	0.54	+1.4
1,803,334	+		GFF1776	0.57	-0.3
1,803,336	-		GFF1776	0.57	+0.2
1,803,346	+		GFF1776	0.62	-2.4
1,803,346	+		GFF1776	0.62	-0.2
1,803,396	+		GFF1776	0.86	-0.7
1,803,404	-				-0.3
1,803,404	-				+0.9
1,803,404	-				+0.8
1,803,413	-				+1.0
1,803,416	+				-0.6
1,803,462	+				-0.7
1,803,462	+				-0.1
1,803,462	+				-0.7
1,803,470	-				+0.3
1,803,470	-				+0.3
1,803,470	-				-1.2
1,803,472	-				+0.2
1,803,484	-		GFF1777	0.12	+0.1
1,803,485	+		GFF1777	0.12	+1.1
1,803,485	+		GFF1777	0.12	+0.2
1,803,491	-		GFF1777	0.13	+0.2
1,803,553	+		GFF1777	0.25	-0.8
1,803,556	+		GFF1777	0.25	-3.1
1,803,556	+		GFF1777	0.25	+1.4
1,803,556	+		GFF1777	0.25	-1.3
1,803,564	-		GFF1777	0.27	-1.9
1,803,574	-		GFF1777	0.29	-0.0
1,803,580	+		GFF1777	0.30	-2.2
1,803,632	-		GFF1777	0.40	+0.0
1,803,661	-		GFF1777	0.45	-0.1
1,803,663	+		GFF1777	0.46	+0.8
1,803,663	+		GFF1777	0.46	-2.8
1,803,663	+		GFF1777	0.46	+0.1
1,803,666	-		GFF1777	0.46	-0.4
1,803,671	-		GFF1777	0.47	+0.6
1,803,671	-		GFF1777	0.47	-0.8
1,803,697	-		GFF1777	0.52	-0.6
1,803,710	+		GFF1777	0.54	-2.3
1,803,718	-		GFF1777	0.56	-0.0
1,803,740	+		GFF1777	0.60	-0.3
1,803,740	+		GFF1777	0.60	+0.6
1,803,740	+		GFF1777	0.60	+1.1
1,803,740	+		GFF1777	0.60	+0.5
1,803,748	-		GFF1777	0.61	-0.2
1,803,750	+		GFF1777	0.62	+0.8
1,803,754	-		GFF1777	0.63	+0.3
1,803,773	-		GFF1777	0.66	+0.9
1,803,794	+		GFF1777	0.70	-0.2
1,803,843	+		GFF1777	0.79	-0.1
1,803,852	+		GFF1777	0.81	+0.2
1,803,895	+		GFF1777	0.89	-0.3
1,803,895	+		GFF1777	0.89	-0.2
1,803,895	+		GFF1777	0.89	-1.4
1,803,895	+		GFF1777	0.89	-1.4
1,803,895	+		GFF1777	0.89	+1.0
1,803,903	-				-1.3
1,803,903	-				-0.1
1,803,903	-				-0.1
1,803,918	+				-0.8
1,803,923	+				-0.3
1,803,923	+				-0.5
1,803,931	-				-0.9
1,803,959	-				-0.4
1,804,002	+				-0.2
1,804,007	+				+0.8
1,804,009	+				+0.4
1,804,009	-				-0.2
1,804,010	-				-0.5
1,804,010	-				-1.1
1,804,013	+				-2.5
1,804,016	+				-1.0
1,804,026	-				+0.4
1,804,106	+				-0.2
1,804,106	+				+0.8
1,804,106	+				-0.6
1,804,106	-				-0.2
1,804,114	-				-1.7
1,804,119	-				-0.7
1,804,122	-				-1.3
1,804,127	-				-0.6
1,804,135	-				-1.9
1,804,135	-				-1.1
1,804,163	+				-0.2
1,804,171	-				-1.7
1,804,188	-		GFF1778	0.11	-0.4
1,804,244	-		GFF1778	0.16	+0.5
1,804,255	-		GFF1778	0.17	+0.1
1,804,265	+		GFF1778	0.18	-1.0
1,804,266	+		GFF1778	0.18	-0.6
1,804,266	+		GFF1778	0.18	-0.9
1,804,274	-		GFF1778	0.18	+0.8
1,804,286	-		GFF1778	0.20	+0.8
1,804,326	+		GFF1778	0.23	-1.7
1,804,366	-		GFF1778	0.27	+0.5
1,804,392	+		GFF1778	0.29	+0.0
1,804,402	-		GFF1778	0.30	-2.1
1,804,414	+		GFF1778	0.31	+0.9
1,804,437	+		GFF1778	0.33	-0.2
1,804,437	+		GFF1778	0.33	+0.3
1,804,441	+		GFF1778	0.33	-0.7
1,804,441	+		GFF1778	0.33	-0.4
1,804,444	-		GFF1778	0.34	-0.5
1,804,445	-		GFF1778	0.34	+0.7
1,804,445	-		GFF1778	0.34	-0.7
1,804,445	-		GFF1778	0.34	-0.4
1,804,445	-		GFF1778	0.34	+0.1
1,804,445	-		GFF1778	0.34	-0.4
1,804,445	-		GFF1778	0.34	+0.1
1,804,455	+		GFF1778	0.35	-0.3
1,804,460	+		GFF1778	0.35	-0.3
1,804,460	+		GFF1778	0.35	+1.3
1,804,463	-		GFF1778	0.35	+0.8
1,804,463	-		GFF1778	0.35	-2.5
1,804,468	-		GFF1778	0.36	+1.0
1,804,468	-		GFF1778	0.36	-0.4
1,804,468	-		GFF1778	0.36	-0.2
1,804,468	-		GFF1778	0.36	-1.0
1,804,468	-		GFF1778	0.36	-1.7
1,804,468	-		GFF1778	0.36	-1.1
1,804,468	-		GFF1778	0.36	-0.0
1,804,483	-		GFF1778	0.37	-0.2
1,804,484	+		GFF1778	0.37	+0.0
1,804,492	-		GFF1778	0.38	+0.4
1,804,492	-		GFF1778	0.38	+0.3
1,804,508	+		GFF1778	0.39	-0.4
1,804,527	-		GFF1778	0.41	-0.8
1,804,528	+		GFF1778	0.41	+0.4
1,804,528	+		GFF1778	0.41	+0.3
1,804,536	-		GFF1778	0.42	+0.4
1,804,546	-		GFF1778	0.43	-0.5
1,804,565	-		GFF1778	0.45	+0.0
1,804,571	+		GFF1778	0.45	+0.5
1,804,571	-		GFF1778	0.45	+1.6
1,804,572	+		GFF1778	0.45	-1.6
1,804,572	+		GFF1778	0.45	-1.1
1,804,577	+		GFF1778	0.46	-1.2
1,804,580	-		GFF1778	0.46	+0.1
1,804,580	-		GFF1778	0.46	-0.5
1,804,580	-		GFF1778	0.46	-0.4
1,804,580	-		GFF1778	0.46	-0.2
1,804,581	-		GFF1778	0.46	-0.4
1,804,598	-		GFF1778	0.47	-2.1
1,804,609	-		GFF1778	0.48	+1.0
1,804,614	+		GFF1778	0.49	+1.3
1,804,622	-		GFF1778	0.50	+0.6
1,804,622	-		GFF1778	0.50	+0.8
1,804,658	+		GFF1778	0.53	+1.7
1,804,658	+		GFF1778	0.53	+0.7
1,804,666	-		GFF1778	0.54	+0.4
1,804,666	-		GFF1778	0.54	-1.1
1,804,670	+		GFF1778	0.54	-1.4
1,804,682	+		GFF1778	0.55	+0.9
1,804,682	+		GFF1778	0.55	-0.5
1,804,713	+		GFF1778	0.58	+0.7
1,804,720	-		GFF1778	0.58	+0.0
1,804,721	-		GFF1778	0.58	+0.1
1,804,721	-		GFF1778	0.58	+1.2
1,804,725	+		GFF1778	0.59	-2.5
1,804,733	-		GFF1778	0.60	-0.7
1,804,744	+		GFF1778	0.61	-2.8
1,804,790	+		GFF1778	0.65	-0.1
1,804,792	-		GFF1778	0.65	+0.6
1,804,796	+		GFF1778	0.65	+0.3
1,804,804	-		GFF1778	0.66	+1.6
1,804,815	+		GFF1778	0.67	+0.2
1,804,815	+		GFF1778	0.67	-1.2
1,804,833	-		GFF1778	0.68	-3.1
1,804,857	+		GFF1778	0.71	+0.3
1,804,894	+		GFF1778	0.74	-1.1
1,804,902	-		GFF1778	0.75	-1.6
1,804,912	+		GFF1778	0.76	-0.4
1,804,935	-		GFF1778	0.78	-0.4
1,804,938	-		GFF1778	0.78	+0.5
1,804,938	-		GFF1778	0.78	+0.2
1,804,987	+		GFF1778	0.82	+0.1
1,804,995	-		GFF1778	0.83	-0.8
1,804,995	-		GFF1778	0.83	-1.8
1,805,005	-		GFF1778	0.84	-1.2
1,805,017	-		GFF1778	0.85	-0.0
1,805,049	+		GFF1778	0.88	-2.0
1,805,056	-		GFF1778	0.88	-0.4
1,805,057	-		GFF1778	0.88	-1.2
1,805,057	-		GFF1778	0.88	+0.1
1,805,060	+		GFF1778	0.89	-0.6
1,805,060	+		GFF1778	0.89	-0.3
1,805,094	+				-1.1
1,805,094	+				+0.7
1,805,094	+				-0.4
1,805,102	-				-0.6
1,805,102	-				+0.2
1,805,102	-				+0.4
1,805,102	-				-1.4
1,805,102	-				-0.0
1,805,132	+				+1.8
1,805,132	-				-2.0
1,805,138	-				-2.6
1,805,155	+				-0.6
1,805,155	+				+1.4
1,805,166	+				+0.5
1,805,182	-				-1.2
1,805,189	+				-0.9
1,805,220	+				-0.8
1,805,249	+				-0.5
1,805,267	+				-1.4
1,805,310	+				+0.3
1,805,310	+				-0.3
1,805,317	+				-0.7
1,805,317	+				+1.0
1,805,317	+				+0.4
1,805,317	+				+0.3
1,805,317	+				+0.8
1,805,318	-				-1.1
1,805,318	-				+1.2
1,805,324	-				-0.3
1,805,325	-				-0.5
1,805,325	-				-0.3
1,805,330	-				-0.0
1,805,358	+				-0.4
1,805,358	+				-0.6
1,805,358	-				+1.4
1,805,359	+				+0.0
1,805,365	+				-2.1
1,805,366	-				-0.3
1,805,366	-				+0.2
1,805,367	-				-0.9
1,805,380	+				-0.7
1,805,385	+				-1.4
1,805,385	+				-0.8
1,805,387	+				+0.6
1,805,387	+				-1.8
1,805,387	+				-0.4
1,805,387	+				+0.1
1,805,388	-				-0.5
1,805,395	+				+0.2
1,805,395	-				-0.5
1,805,398	-				+1.0
1,805,400	+				+0.8
1,805,400	+				-1.3
1,805,400	+				+0.3
1,805,400	+				+0.7
1,805,400	+				+0.1
1,805,400	+				-0.7
1,805,400	+				+0.8
1,805,403	-				-0.0
1,805,405	+				-2.2
1,805,405	+				-0.3
1,805,405	+				-0.7
1,805,405	+				-0.5
1,805,408	-				-0.6
1,805,408	-				-1.4
1,805,408	-				-0.6
1,805,413	-				-0.8
1,805,413	-				-1.2
1,805,413	-				-0.6
1,805,413	-				+1.1
1,805,426	+		GFF1779	0.11	-0.0
1,805,431	+		GFF1779	0.11	+0.1
1,805,434	-		GFF1779	0.12	+0.3
1,805,444	-		GFF1779	0.13	+1.1
1,805,461	+		GFF1779	0.16	-0.8
1,805,461	+		GFF1779	0.16	-2.5
1,805,466	+		GFF1779	0.17	-0.1
1,805,469	-		GFF1779	0.17	-1.2
1,805,469	-		GFF1779	0.17	-1.4
1,805,474	-		GFF1779	0.18	-0.2
1,805,476	+		GFF1779	0.18	+0.2
1,805,476	+		GFF1779	0.18	-1.4
1,805,476	+		GFF1779	0.18	+0.6
1,805,480	-		GFF1779	0.19	-1.3
1,805,484	-		GFF1779	0.19	+0.7
1,805,486	+		GFF1779	0.20	-0.9
1,805,486	+		GFF1779	0.20	+0.3
1,805,491	+		GFF1779	0.20	-0.1
1,805,499	+		GFF1779	0.22	+0.9
1,805,544	+		GFF1779	0.28	-1.5
1,805,560	+		GFF1779	0.31	-1.6
1,805,572	+		GFF1779	0.32	+0.1
1,805,580	-		GFF1779	0.34	+0.2
1,805,580	-		GFF1779	0.34	+0.1
1,805,580	-		GFF1779	0.34	-0.7
1,805,606	-		GFF1779	0.38	-1.6
1,805,610	+		GFF1779	0.38	-0.2
1,805,615	+		GFF1779	0.39	-2.4
1,805,615	+		GFF1779	0.39	-0.4
1,805,615	+		GFF1779	0.39	-1.3
1,805,617	+		GFF1779	0.39	-0.3
1,805,620	+		GFF1779	0.40	+0.1
1,805,620	+		GFF1779	0.40	-0.6
1,805,628	-		GFF1779	0.41	+0.7
1,805,631	-		GFF1779	0.41	-1.3
1,805,633	+		GFF1779	0.42	-1.8
1,805,668	+		GFF1779	0.47	-2.0
1,805,668	+		GFF1779	0.47	-0.3
1,805,668	+		GFF1779	0.47	+0.2
1,805,668	+		GFF1779	0.47	-0.4
1,805,668	+		GFF1779	0.47	-1.4
1,805,668	+		GFF1779	0.47	+1.1
1,805,668	+		GFF1779	0.47	-0.2
1,805,676	-		GFF1779	0.48	-0.2
1,805,676	-		GFF1779	0.48	+0.8
1,805,676	-		GFF1779	0.48	-0.4
1,805,676	-		GFF1779	0.48	+0.8
1,805,726	+		GFF1779	0.55	-0.6
1,805,743	+		GFF1779	0.58	-0.5
1,805,747	-		GFF1779	0.59	+1.1
1,805,758	-		GFF1779	0.60	-0.0
1,805,764	-		GFF1779	0.61	-0.0
1,805,780	-		GFF1779	0.64	-2.3
1,805,803	+		GFF1779	0.67	-0.6
1,805,811	-		GFF1779	0.68	+1.0
1,805,819	-		GFF1779	0.69	-0.6
1,805,865	+		GFF1779	0.76	+1.0
1,805,873	-		GFF1779	0.77	-1.3
1,805,873	-		GFF1779	0.77	-0.8
1,805,873	-		GFF1779	0.77	-0.1
1,805,873	-		GFF1779	0.77	-0.7
1,805,875	+		GFF1779	0.78	+0.4
1,805,878	-		GFF1779	0.78	-2.1
1,805,900	+		GFF1779	0.81	-0.2
1,805,902	-		GFF1779	0.82	-0.3
1,805,902	-		GFF1779	0.82	+0.5
1,805,908	-		GFF1779	0.83	-1.3
1,805,913	-		GFF1779	0.83	+1.0
1,805,919	+		GFF1779	0.84	-1.3
1,805,926	+		GFF1779	0.85	+0.1
1,805,946	-		GFF1779	0.88	-0.8
1,805,959	-				+0.0
1,805,964	+				+0.5
1,805,975	+				+0.3
1,805,983	-				-2.1
1,805,993	+				+1.2
1,806,008	-				-2.2
1,806,008	-				+0.5
1,806,010	+				+0.3
1,806,016	+				+0.1
1,806,018	-				+2.1
1,806,024	-				-0.5
1,806,024	-				-2.2
1,806,024	-				+1.8
1,806,036	+				-0.3
1,806,041	+				-0.5
1,806,041	+				-0.1
1,806,041	+				-0.3
1,806,041	+				+0.4
1,806,041	-				+0.5
1,806,044	-				-0.3
1,806,049	-				-1.3
1,806,049	-				-1.0
1,806,049	-				+1.3
1,806,049	-				+1.3
1,806,049	-				+0.4
1,806,049	-				+1.9
1,806,049	-				+0.3
1,806,049	-				-1.4
1,806,054	-				+1.7
1,806,059	-		GFF1780	0.10	-0.1
1,806,061	-		GFF1780	0.11	+0.8
1,806,103	-		GFF1780	0.24	+0.5
1,806,152	+		GFF1780	0.38	+0.6
1,806,152	+		GFF1780	0.38	+1.2
1,806,152	+		GFF1780	0.38	-1.2
1,806,152	+		GFF1780	0.38	+0.5
1,806,152	+		GFF1780	0.38	+0.9
1,806,152	+		GFF1780	0.38	+1.2
1,806,152	+		GFF1780	0.38	+0.2
1,806,154	+		GFF1780	0.39	-2.6
1,806,160	-		GFF1780	0.41	-0.7
1,806,160	-		GFF1780	0.41	-0.2
1,806,160	-		GFF1780	0.41	-0.9
1,806,169	+		GFF1780	0.44	-1.1
1,806,176	+		GFF1780	0.46	+0.9
1,806,177	-		GFF1780	0.46	+0.4