Strain Fitness in Sphingobium sp. HT1-2 around GFF1772

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,800,708	+				-0.6
1,800,754	-				+0.7
1,800,760	-				-1.0
1,800,776	+				-0.1
1,800,841	-		GFF1770	0.14	+0.1
1,800,845	+		GFF1770	0.15	+1.1
1,800,845	+		GFF1770	0.15	-0.3
1,800,845	+		GFF1770	0.15	-0.0
1,800,845	+		GFF1770	0.15	-1.7
1,800,845	+		GFF1770	0.15	-0.8
1,800,845	+		GFF1770	0.15	-1.9
1,800,845	+		GFF1770	0.15	-1.0
1,800,853	-		GFF1770	0.16	-0.8
1,800,853	-		GFF1770	0.16	+0.3
1,800,853	-		GFF1770	0.16	+0.5
1,800,853	-		GFF1770	0.16	+0.5
1,800,853	-		GFF1770	0.16	+0.2
1,800,853	-		GFF1770	0.16	+0.5
1,800,853	-		GFF1770	0.16	-0.1
1,800,853	-		GFF1770	0.16	-1.2
1,800,853	-		GFF1770	0.16	-1.2
1,800,853	-		GFF1770	0.16	+0.5
1,800,879	-		GFF1770	0.21	-0.3
1,800,879	-		GFF1770	0.21	-1.5
1,800,880	+		GFF1770	0.21	-0.2
1,800,928	+		GFF1770	0.30	-0.3
1,800,936	-		GFF1770	0.31	+0.3
1,800,936	-		GFF1770	0.31	-1.0
1,800,936	-		GFF1770	0.31	-0.5
1,800,936	-		GFF1770	0.31	+0.5
1,800,949	+		GFF1770	0.33	-0.0
1,800,949	+		GFF1770	0.33	-1.3
1,800,949	+		GFF1770	0.33	-0.4
1,800,951	+		GFF1770	0.34	+1.2
1,800,951	+		GFF1770	0.34	-1.5
1,800,951	+		GFF1770	0.34	-1.2
1,800,951	+		GFF1770	0.34	-1.3
1,800,957	-		GFF1770	0.35	-1.7
1,800,957	-		GFF1770	0.35	+0.4
1,800,957	-		GFF1770	0.35	-0.6
1,800,957	-		GFF1770	0.35	-0.7
1,800,959	-		GFF1770	0.35	-0.0
1,800,959	-		GFF1770	0.35	-1.2
1,800,959	-		GFF1770	0.35	-1.5
1,800,959	-		GFF1770	0.35	-0.1
1,800,959	-		GFF1770	0.35	-1.8
1,800,970	+		GFF1770	0.37	-0.8
1,801,004	-		GFF1770	0.43	-0.5
1,801,006	+		GFF1770	0.44	-0.1
1,801,013	+		GFF1770	0.45	-0.6
1,801,013	+		GFF1770	0.45	-0.9
1,801,013	+		GFF1770	0.45	+0.5
1,801,013	+		GFF1770	0.45	-0.6
1,801,013	+		GFF1770	0.45	-0.9
1,801,013	+		GFF1770	0.45	+0.2
1,801,013	+		GFF1770	0.45	-0.9
1,801,014	-		GFF1770	0.45	+0.2
1,801,021	-		GFF1770	0.46	+2.5
1,801,021	-		GFF1770	0.46	+0.0
1,801,021	-		GFF1770	0.46	+0.5
1,801,021	-		GFF1770	0.46	+0.2
1,801,021	-		GFF1770	0.46	+0.1
1,801,021	-		GFF1770	0.46	-1.1
1,801,031	+		GFF1770	0.48	+1.0
1,801,039	-		GFF1770	0.50	+1.0
1,801,048	-		GFF1770	0.51	-0.9
1,801,067	+		GFF1770	0.55	-0.5
1,801,072	+		GFF1770	0.55	+0.6
1,801,072	+		GFF1770	0.55	+0.8
1,801,074	+		GFF1770	0.56	+0.3
1,801,075	-		GFF1770	0.56	+0.9
1,801,075	-		GFF1770	0.56	-1.2
1,801,098	+		GFF1770	0.60	+2.1
1,801,098	+		GFF1770	0.60	+1.5
1,801,127	+		GFF1770	0.65	-0.2
1,801,140	+		GFF1770	0.68	-1.2
1,801,148	-		GFF1770	0.69	+0.4
1,801,172	-		GFF1770	0.74	+0.4
1,801,172	-		GFF1770	0.74	-0.3
1,801,200	-		GFF1770	0.79	-1.0
1,801,202	+		GFF1770	0.79	-0.5
1,801,221	+		GFF1770	0.82	+0.3
1,801,234	-		GFF1770	0.85	-2.4
1,801,254	-		GFF1770	0.88	-0.2
1,801,254	-		GFF1770	0.88	-0.4
1,801,254	-		GFF1770	0.88	-0.8
1,801,278	+				+0.5
1,801,286	-				-0.5
1,801,291	+				-0.4
1,801,291	+				+0.8
1,801,312	+				+0.4
1,801,328	-				+1.0
1,801,335	-				-1.5
1,801,342	-				-0.5
1,801,342	-				-1.4
1,801,353	+				+0.5
1,801,353	+				+1.4
1,801,353	+				+1.1
1,801,361	-				+1.4
1,801,361	-				+0.9
1,801,364	+				+0.6
1,801,365	+				+0.1
1,801,365	+				-2.6
1,801,365	+				-0.3
1,801,366	-				-1.6
1,801,366	-				-0.6
1,801,373	-				-0.7
1,801,373	-				-0.1
1,801,373	-				-0.2
1,801,373	-				-1.0
1,801,373	-				-0.3
1,801,380	-				+0.8
1,801,391	+				-2.3
1,801,392	+				+0.1
1,801,399	-				-1.0
1,801,399	-				-1.2
1,801,403	+				+0.6
1,801,413	+				-0.2
1,801,413	+				-1.6
1,801,413	+				-0.1
1,801,421	-				+0.4
1,801,421	-				+0.6
1,801,421	-				-1.2
1,801,421	-				-0.0
1,801,421	-				-1.2
1,801,471	+				+0.0
1,801,481	+				+0.1
1,801,481	+				-0.6
1,801,481	+				+0.4
1,801,489	-				-1.5
1,801,507	+				-0.5
1,801,507	+				+0.6
1,801,512	+				+1.1
1,801,517	+				-1.0
1,801,517	+				-0.6
1,801,525	-				-0.0
1,801,535	-		GFF1771	0.11	+0.8
1,801,535	-		GFF1771	0.11	-0.2
1,801,536	+		GFF1771	0.11	-0.6
1,801,563	-		GFF1771	0.25	-2.6
1,801,565	+		GFF1771	0.26	-0.2
1,801,594	-		GFF1771	0.40	-1.9
1,801,620	-		GFF1771	0.54	-0.2
1,801,662	-		GFF1771	0.75	+0.2
1,801,679	-		GFF1771	0.83	-2.0
1,801,739	+				-0.3
1,801,751	+		GFF1772	0.14	+0.2
1,801,754	-		GFF1772	0.15	-0.1
1,801,764	-		GFF1772	0.18	-2.2
1,801,797	-		GFF1772	0.28	-1.4
1,801,797	-		GFF1772	0.28	-0.3
1,801,804	+		GFF1772	0.30	-0.7
1,801,804	+		GFF1772	0.30	-1.0
1,801,805	-		GFF1772	0.31	+0.9
1,801,812	+		GFF1772	0.33	-3.2
1,801,817	-		GFF1772	0.35	+0.5
1,801,820	-		GFF1772	0.36	-1.6
1,801,825	-		GFF1772	0.37	-0.9
1,801,829	-		GFF1772	0.38	+0.3
1,801,832	+		GFF1772	0.39	+0.1
1,801,832	+		GFF1772	0.39	-0.7
1,801,832	+		GFF1772	0.39	-0.9
1,801,832	+		GFF1772	0.39	-0.4
1,801,832	+		GFF1772	0.39	-1.0
1,801,832	+		GFF1772	0.39	-0.7
1,801,832	+		GFF1772	0.39	+0.8
1,801,832	+		GFF1772	0.39	-1.1
1,801,835	-		GFF1772	0.40	-0.0
1,801,840	-		GFF1772	0.42	-2.1
1,801,840	-		GFF1772	0.42	+0.7
1,801,840	-		GFF1772	0.42	+0.4
1,801,840	-		GFF1772	0.42	-0.3
1,801,840	-		GFF1772	0.42	-0.4
1,801,840	-		GFF1772	0.42	-1.5
1,801,840	-		GFF1772	0.42	-1.0
1,801,849	-		GFF1772	0.45	-0.0
1,801,849	-		GFF1772	0.45	+0.4
1,801,849	-		GFF1772	0.45	+0.2
1,801,850	+		GFF1772	0.45	-1.6
1,801,883	+		GFF1772	0.56	-0.8
1,801,883	+		GFF1772	0.56	-0.2
1,801,883	+		GFF1772	0.56	-1.4
1,801,891	-		GFF1772	0.58	-1.2
1,801,891	-		GFF1772	0.58	+0.9
1,801,891	-		GFF1772	0.58	+0.9
1,801,891	-		GFF1772	0.58	-1.8
1,801,891	-		GFF1772	0.58	+0.6
1,801,891	-		GFF1772	0.58	+0.2
1,801,891	-		GFF1772	0.58	-1.4
1,801,892	+		GFF1772	0.58	-0.5
1,801,926	+		GFF1772	0.69	+0.8
1,801,975	+		GFF1772	0.85	+0.4
1,801,983	-		GFF1772	0.87	+0.4
1,801,983	-		GFF1772	0.87	-2.2
1,801,983	-		GFF1772	0.87	+0.1
1,801,983	-		GFF1772	0.87	-0.3
1,801,999	-				-0.1
1,802,000	+				-0.7
1,802,000	+				-1.3
1,802,008	-				-0.8
1,802,008	-				-0.7
1,802,008	-				-1.9
1,802,010	-				-0.3
1,802,020	+				+1.0
1,802,030	+				-0.1
1,802,030	+				-0.4
1,802,038	-				-0.9
1,802,043	+				+0.5
1,802,043	-				+0.5
1,802,049	-				+0.4
1,802,057	+				-0.1
1,802,057	+				+0.2
1,802,062	+		GFF1773	0.11	+1.5
1,802,062	+		GFF1773	0.11	-0.9
1,802,065	-		GFF1773	0.11	-1.4
1,802,072	+		GFF1773	0.13	-0.4
1,802,074	+		GFF1773	0.13	-1.7
1,802,082	-		GFF1773	0.15	+1.6
1,802,082	-		GFF1773	0.15	+0.1
1,802,082	-		GFF1773	0.15	+0.1
1,802,082	-		GFF1773	0.15	-2.1
1,802,082	-		GFF1773	0.15	+0.4
1,802,138	+		GFF1773	0.29	-0.2
1,802,150	+		GFF1773	0.32	-0.1
1,802,157	+		GFF1773	0.34	-0.2
1,802,158	-		GFF1773	0.34	+0.0
1,802,159	+		GFF1773	0.34	+0.1
1,802,167	+		GFF1773	0.36	-0.2
1,802,172	+		GFF1773	0.38	-0.2
1,802,185	-		GFF1773	0.41	-0.5
1,802,185	-		GFF1773	0.41	-2.4
1,802,185	-		GFF1773	0.41	-0.0
1,802,185	-		GFF1773	0.41	-0.5
1,802,200	-		GFF1773	0.44	-0.8
1,802,204	-		GFF1773	0.45	-0.6
1,802,221	+		GFF1773	0.50	+0.7
1,802,239	-		GFF1773	0.54	+0.0
1,802,260	+		GFF1773	0.59	+0.3
1,802,260	+		GFF1773	0.59	-0.5
1,802,268	-		GFF1773	0.61	+0.3
1,802,268	-		GFF1773	0.61	+1.8
1,802,270	+		GFF1773	0.62	+0.0
1,802,283	+		GFF1773	0.65	-0.6
1,802,283	+		GFF1773	0.65	-0.3
1,802,284	+		GFF1773	0.65	+0.4
1,802,284	+		GFF1773	0.65	+0.8
1,802,304	-		GFF1773	0.70	-0.5
1,802,317	-		GFF1773	0.73	+0.5
1,802,328	+		GFF1773	0.76	-0.3
1,802,330	+		GFF1773	0.76	-0.4
1,802,330	+		GFF1773	0.76	-0.4
1,802,336	-		GFF1773	0.78	-0.2
1,802,338	-		GFF1773	0.78	-1.9
1,802,338	-		GFF1773	0.78	-1.3
1,802,365	-		GFF1773	0.85	-1.5
1,802,365	-		GFF1773	0.85	-0.4
1,802,451	-				-1.8
1,802,465	+				-1.4
1,802,473	-				+0.3
1,802,473	-				+0.6
1,802,473	-				+2.0
1,802,473	-				-1.9
1,802,477	+				-1.2
1,802,477	+				-1.2
1,802,477	+				-0.6
1,802,477	+				+0.5
1,802,477	+				+0.9
1,802,477	+				+0.5
1,802,477	+				-2.3
1,802,477	+				+0.3
1,802,477	+				-1.0
1,802,477	+				-0.2
1,802,485	-				-1.8
1,802,485	-				-0.1
1,802,485	-				-0.3
1,802,485	-				-0.5
1,802,485	-				-0.7
1,802,485	-				+0.2
1,802,485	-				-0.9
1,802,485	-				-0.5
1,802,485	-				-1.2
1,802,490	+				-0.4
1,802,501	-				-0.2
1,802,520	-		GFF1774	0.11	+1.3
1,802,547	-		GFF1774	0.20	-0.4
1,802,549	+		GFF1774	0.20	-0.8
1,802,566	-		GFF1774	0.25	-0.4
1,802,566	-		GFF1774	0.25	-0.5
1,802,569	-		GFF1774	0.26	+0.3
1,802,574	+		GFF1774	0.28	+0.2
1,802,579	+		GFF1774	0.29	-0.5
1,802,579	+		GFF1774	0.29	+0.7
1,802,584	+		GFF1774	0.31	-0.8
1,802,584	+		GFF1774	0.31	-0.4
1,802,584	+		GFF1774	0.31	-0.9
1,802,584	+		GFF1774	0.31	+0.6
1,802,584	+		GFF1774	0.31	-1.3
1,802,584	+		GFF1774	0.31	-1.5
1,802,584	+		GFF1774	0.31	+0.3
1,802,584	+		GFF1774	0.31	-0.4
1,802,584	+		GFF1774	0.31	-0.0
1,802,585	+		GFF1774	0.31	-1.8
1,802,585	+		GFF1774	0.31	-0.4
1,802,587	-		GFF1774	0.32	-0.2
1,802,587	-		GFF1774	0.32	-1.2
1,802,590	+		GFF1774	0.33	-0.7
1,802,592	-		GFF1774	0.33	-0.7
1,802,592	-		GFF1774	0.33	+0.3
1,802,592	-		GFF1774	0.33	+0.1
1,802,599	+		GFF1774	0.35	+0.9
1,802,613	-		GFF1774	0.40	-0.6
1,802,635	+		GFF1774	0.46	-0.2
1,802,643	-		GFF1774	0.49	-1.2
1,802,643	-		GFF1774	0.49	+0.7
1,802,666	+		GFF1774	0.56	-0.4
1,802,692	+		GFF1774	0.64	-0.6
1,802,692	+		GFF1774	0.64	-1.5
1,802,692	+		GFF1774	0.64	-0.0
1,802,692	+		GFF1774	0.64	-0.0
1,802,692	+		GFF1774	0.64	-1.7
1,802,692	+		GFF1774	0.64	+0.7
1,802,692	+		GFF1774	0.64	+1.5
1,802,692	+		GFF1774	0.64	-0.9
1,802,692	+		GFF1774	0.64	-1.5
1,802,692	+		GFF1774	0.64	-0.6
1,802,692	+		GFF1774	0.64	-0.7
1,802,692	+		GFF1774	0.64	+1.7
1,802,692	+		GFF1774	0.64	-1.3
1,802,692	+		GFF1774	0.64	-0.3
1,802,692	+		GFF1774	0.64	-1.5
1,802,692	+		GFF1774	0.64	+0.2
1,802,692	+		GFF1774	0.64	-1.4
1,802,692	+		GFF1774	0.64	-2.4
1,802,692	+		GFF1774	0.64	+0.8
1,802,692	+		GFF1774	0.64	+0.1
1,802,692	+		GFF1774	0.64	-2.4
1,802,692	+		GFF1774	0.64	+1.3
1,802,692	+		GFF1774	0.64	-0.9
1,802,692	+		GFF1774	0.64	-0.3
1,802,692	+		GFF1774	0.64	+0.6
1,802,692	+		GFF1774	0.64	+0.4
1,802,692	+		GFF1774	0.64	-1.2
1,802,692	+		GFF1774	0.64	-1.0
1,802,692	+		GFF1774	0.64	-0.1
1,802,700	-		GFF1774	0.66	-1.5
1,802,700	-		GFF1774	0.66	-0.3
1,802,700	-		GFF1774	0.66	-0.1
1,802,700	-		GFF1774	0.66	-1.3
1,802,700	-		GFF1774	0.66	+0.6
1,802,700	-		GFF1774	0.66	-0.4
1,802,700	-		GFF1774	0.66	-0.4
1,802,700	-		GFF1774	0.66	-0.7
1,802,700	-		GFF1774	0.66	-0.2
1,802,700	-		GFF1774	0.66	+0.5
1,802,700	-		GFF1774	0.66	-0.6
1,802,700	-		GFF1774	0.66	+0.8
1,802,700	-		GFF1774	0.66	-0.3
1,802,700	-		GFF1774	0.66	+0.6
1,802,700	-		GFF1774	0.66	-0.0
1,802,700	-		GFF1774	0.66	-0.1
1,802,700	-		GFF1774	0.66	+0.2
1,802,700	-		GFF1774	0.66	+1.1
1,802,700	-		GFF1774	0.66	-0.1
1,802,700	-		GFF1774	0.66	-0.3
1,802,700	-		GFF1774	0.66	+0.1
1,802,700	-		GFF1774	0.66	+0.7
1,802,700	-		GFF1774	0.66	+0.9
1,802,700	-		GFF1774	0.66	+0.2
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1,802,823	+				+0.2
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