Strain Fitness in Sphingobium sp. HT1-2 around GFF1760

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,789,133	-		GFF1759	0.47	-2.2
1,789,139	-		GFF1759	0.47	+1.2
1,789,172	+		GFF1759	0.50	+0.4
1,789,172	+		GFF1759	0.50	+0.5
1,789,180	-		GFF1759	0.50	+1.2
1,789,180	-		GFF1759	0.50	+0.4
1,789,180	-		GFF1759	0.50	+0.5
1,789,180	-		GFF1759	0.50	+1.0
1,789,180	-		GFF1759	0.50	+0.8
1,789,204	-		GFF1759	0.52	+0.8
1,789,246	+		GFF1759	0.55	-0.9
1,789,246	-		GFF1759	0.55	-0.8
1,789,271	+		GFF1759	0.57	-1.6
1,789,276	+		GFF1759	0.57	+0.1
1,789,279	-		GFF1759	0.57	+0.5
1,789,279	-		GFF1759	0.57	+0.9
1,789,291	-		GFF1759	0.58	-1.6
1,789,299	+		GFF1759	0.59	-1.5
1,789,315	-		GFF1759	0.60	-1.7
1,789,315	-		GFF1759	0.60	-0.3
1,789,339	-		GFF1759	0.62	-0.3
1,789,345	-		GFF1759	0.62	-0.5
1,789,423	-		GFF1759	0.68	+0.6
1,789,481	-		GFF1759	0.72	-0.5
1,789,484	-		GFF1759	0.72	+0.6
1,789,486	-		GFF1759	0.73	-0.5
1,789,486	-		GFF1759	0.73	+0.7
1,789,491	-		GFF1759	0.73	+0.5
1,789,492	-		GFF1759	0.73	-0.5
1,789,531	-		GFF1759	0.76	-1.7
1,789,538	+		GFF1759	0.76	-1.3
1,789,553	+		GFF1759	0.78	-1.4
1,789,553	+		GFF1759	0.78	-1.0
1,789,553	+		GFF1759	0.78	-2.0
1,789,554	+		GFF1759	0.78	-1.3
1,789,558	+		GFF1759	0.78	-0.6
1,789,558	+		GFF1759	0.78	-0.8
1,789,561	-		GFF1759	0.78	-0.3
1,789,566	-		GFF1759	0.79	+0.6
1,789,569	+		GFF1759	0.79	-0.8
1,789,574	+		GFF1759	0.79	-0.8
1,789,577	-		GFF1759	0.79	+0.5
1,789,582	-		GFF1759	0.80	-0.6
1,789,592	+		GFF1759	0.80	+0.1
1,789,600	-		GFF1759	0.81	-0.8
1,789,600	-		GFF1759	0.81	+0.6
1,789,616	+		GFF1759	0.82	-0.0
1,789,616	+		GFF1759	0.82	+0.8
1,789,624	-		GFF1759	0.83	-1.4
1,789,631	-		GFF1759	0.83	+0.2
1,789,641	-		GFF1759	0.84	+1.0
1,789,675	+		GFF1759	0.87	-0.7
1,789,698	+		GFF1759	0.88	+0.3
1,789,706	-		GFF1759	0.89	+1.0
1,789,708	+		GFF1759	0.89	-0.0
1,789,716	-		GFF1759	0.90	-1.5
1,789,717	+		GFF1759	0.90	-0.8
1,789,740	+				-0.5
1,789,775	+				+1.2
1,789,775	+				+0.3
1,789,780	+				+0.7
1,789,780	+				-0.3
1,789,780	+				-1.9
1,789,817	-				-1.6
1,789,845	+				-0.6
1,789,903	+				-0.4
1,789,912	+				-0.1
1,789,923	+				+0.5
1,789,931	-				+0.2
1,789,936	+				-0.5
1,789,936	+				-1.2
1,789,944	-				-0.3
1,789,954	-				-0.5
1,789,954	-				+0.5
1,789,980	+				-0.6
1,789,991	+				-0.5
1,790,027	-				+0.7
1,790,033	-				-0.2
1,790,033	-				+0.2
1,790,035	+				-0.2
1,790,040	+				-2.8
1,790,043	-				-0.3
1,790,052	+				+0.2
1,790,068	+				-1.6
1,790,084	-				-0.2
1,790,124	-				-0.9
1,790,126	-				-0.3
1,790,126	-				-1.8
1,790,128	+				-1.4
1,790,128	+				-0.5
1,790,130	+				+0.5
1,790,130	+				+0.6
1,790,130	+				+0.2
1,790,175	-				+1.7
1,790,218	+		GFF1760	0.12	-1.2
1,790,223	-		GFF1760	0.13	+0.0
1,790,226	-		GFF1760	0.13	-1.3
1,790,226	-		GFF1760	0.13	+0.4
1,790,232	+		GFF1760	0.14	+1.1
1,790,328	-		GFF1760	0.27	-1.1
1,790,332	-		GFF1760	0.28	-0.2
1,790,367	+		GFF1760	0.33	+0.2
1,790,367	+		GFF1760	0.33	-0.4
1,790,400	-		GFF1760	0.37	+0.9
1,790,404	+		GFF1760	0.38	-1.2
1,790,404	+		GFF1760	0.38	-1.3
1,790,404	+		GFF1760	0.38	-0.2
1,790,412	-		GFF1760	0.39	+0.2
1,790,419	-		GFF1760	0.40	+0.9
1,790,420	+		GFF1760	0.40	-1.5
1,790,428	-		GFF1760	0.41	-1.2
1,790,446	+		GFF1760	0.43	+0.6
1,790,451	+		GFF1760	0.44	-1.3
1,790,451	+		GFF1760	0.44	-0.4
1,790,451	+		GFF1760	0.44	-1.4
1,790,451	+		GFF1760	0.44	-1.3
1,790,454	-		GFF1760	0.45	-1.3
1,790,454	-		GFF1760	0.45	+0.5
1,790,459	-		GFF1760	0.45	-2.2
1,790,459	-		GFF1760	0.45	+0.6
1,790,459	-		GFF1760	0.45	-0.6
1,790,459	-		GFF1760	0.45	+0.5
1,790,469	-		GFF1760	0.47	+0.1
1,790,496	+		GFF1760	0.50	-0.2
1,790,496	+		GFF1760	0.50	-0.9
1,790,496	+		GFF1760	0.50	+0.0
1,790,496	+		GFF1760	0.50	-1.2
1,790,504	-		GFF1760	0.51	+0.9
1,790,504	-		GFF1760	0.51	-0.3
1,790,506	+		GFF1760	0.52	-0.2
1,790,506	+		GFF1760	0.52	-1.2
1,790,506	+		GFF1760	0.52	+0.1
1,790,506	+		GFF1760	0.52	-0.6
1,790,506	+		GFF1760	0.52	+1.4
1,790,506	+		GFF1760	0.52	-0.5
1,790,506	+		GFF1760	0.52	+0.6
1,790,506	+		GFF1760	0.52	+0.8
1,790,506	+		GFF1760	0.52	+0.6
1,790,506	+		GFF1760	0.52	-0.7
1,790,506	+		GFF1760	0.52	-1.9
1,790,508	-		GFF1760	0.52	+0.5
1,790,514	-		GFF1760	0.53	+0.2
1,790,514	-		GFF1760	0.53	+0.4
1,790,514	-		GFF1760	0.53	-0.2
1,790,514	-		GFF1760	0.53	+0.4
1,790,514	-		GFF1760	0.53	-0.1
1,790,514	-		GFF1760	0.53	+1.0
1,790,514	-		GFF1760	0.53	-0.7
1,790,514	-		GFF1760	0.53	+0.2
1,790,514	-		GFF1760	0.53	-0.2
1,790,526	+		GFF1760	0.54	+0.4
1,790,526	+		GFF1760	0.54	+0.8
1,790,547	+		GFF1760	0.57	-0.5
1,790,562	+		GFF1760	0.59	+1.4
1,790,570	-		GFF1760	0.61	-1.5
1,790,585	-		GFF1760	0.63	-0.1
1,790,598	+		GFF1760	0.64	+1.0
1,790,603	+		GFF1760	0.65	-1.2
1,790,603	+		GFF1760	0.65	+1.6
1,790,603	+		GFF1760	0.65	+0.5
1,790,603	+		GFF1760	0.65	+0.6
1,790,603	+		GFF1760	0.65	+0.1
1,790,603	+		GFF1760	0.65	+0.9
1,790,605	+		GFF1760	0.65	+0.4
1,790,611	-		GFF1760	0.66	-2.0
1,790,611	-		GFF1760	0.66	+0.3
1,790,611	-		GFF1760	0.66	-0.3
1,790,611	-		GFF1760	0.66	-0.5
1,790,643	+		GFF1760	0.71	-0.3
1,790,643	+		GFF1760	0.71	-0.4
1,790,643	+		GFF1760	0.71	+0.4
1,790,643	+		GFF1760	0.71	+0.3
1,790,643	+		GFF1760	0.71	-0.8
1,790,643	+		GFF1760	0.71	-0.6
1,790,643	+		GFF1760	0.71	-0.4
1,790,643	+		GFF1760	0.71	-0.4
1,790,651	-		GFF1760	0.72	-0.0
1,790,651	-		GFF1760	0.72	-1.3
1,790,651	-		GFF1760	0.72	-0.5
1,790,651	-		GFF1760	0.72	+1.2
1,790,653	+		GFF1760	0.72	+0.7
1,790,661	-		GFF1760	0.73	-0.6
1,790,661	-		GFF1760	0.73	-1.2
1,790,661	-		GFF1760	0.73	+0.6
1,790,673	+		GFF1760	0.75	-1.9
1,790,678	+		GFF1760	0.76	-0.4
1,790,720	+		GFF1760	0.81	+0.7
1,790,734	+		GFF1760	0.83	-0.8
1,790,742	-		GFF1760	0.84	+0.5
1,790,756	+		GFF1760	0.86	-0.7
1,790,756	+		GFF1760	0.86	-1.3
1,790,758	+		GFF1760	0.87	+0.5
1,790,758	+		GFF1760	0.87	-1.5
1,790,763	+		GFF1760	0.87	+0.8
1,790,770	+		GFF1760	0.88	-0.7
1,790,773	-		GFF1760	0.89	+0.8
1,790,787	+				+0.2
1,790,795	-				-0.8
1,790,795	-				+0.1
1,790,795	-				-2.1
1,790,805	+				-0.6
1,790,805	+				+0.6
1,790,805	+				-0.8
1,790,814	+				+0.3
1,790,865	+				-1.2
1,790,865	+				+0.6
1,790,879	+				-0.2
1,790,879	+				-1.3
1,790,883	+				-0.2
1,790,891	-				+0.4
1,790,897	+				+0.3
1,790,914	-				+0.4
1,790,915	+				-0.0
1,790,923	-				-1.2
1,790,930	+				-0.2
1,790,931	-				-0.7
1,790,935	+				+0.1
1,790,935	+				-1.2
1,790,938	-				-0.5
1,790,943	-				-0.2
1,790,943	-				-0.1
1,790,943	-				-0.6
1,790,963	+				-1.8
1,790,963	+				+0.5
1,790,971	-				-1.0
1,790,971	-				+1.0
1,790,997	+				+0.5
1,790,997	+				-0.6
1,791,054	-				-2.0
1,791,061	-				-1.0
1,791,063	+				-0.0
1,791,064	-				+0.0
1,791,078	+				+0.2
1,791,086	-		GFF1761	0.13	+0.4
1,791,091	+		GFF1761	0.15	-1.4
1,791,091	+		GFF1761	0.15	-0.2
1,791,091	+		GFF1761	0.15	-0.5
1,791,099	-		GFF1761	0.18	+0.2
1,791,103	+		GFF1761	0.20	-0.4
1,791,111	+		GFF1761	0.24	-1.2
1,791,111	-		GFF1761	0.24	-0.5
1,791,111	-		GFF1761	0.24	-1.8
1,791,111	-		GFF1761	0.24	+0.0
1,791,184	+		GFF1761	0.55	-0.6
1,791,192	-		GFF1761	0.58	-1.5
1,791,192	-		GFF1761	0.58	+1.6
1,791,209	+		GFF1761	0.65	+0.4
1,791,209	+		GFF1761	0.65	-1.5
1,791,234	+		GFF1761	0.76	+0.4
1,791,234	+		GFF1761	0.76	-2.2
1,791,269	+				+0.7
1,791,313	+				+0.2
1,791,314	+				+1.4
1,791,334	+				-0.4
1,791,352	+				+1.2
1,791,360	-				+1.5
1,791,383	-				-0.5
1,791,383	-				+0.2
1,791,388	-				-1.8
1,791,390	+				-0.6
1,791,397	-				-0.1
1,791,476	+				-0.5
1,791,483	-				+1.1
1,791,484	-				+0.6
1,791,496	+				-1.9
1,791,517	+				+0.7
1,791,539	+				+1.3
1,791,539	+				+0.2
1,791,566	+				-1.1
1,791,613	+				-0.8
1,791,621	-				+0.5
1,791,625	-				-0.5
1,791,680	-		GFF1762	0.11	+0.2
1,791,712	-		GFF1762	0.17	-0.7
1,791,712	-		GFF1762	0.17	+0.3
1,791,715	+		GFF1762	0.18	+0.3
1,791,717	-		GFF1762	0.18	-0.9
1,791,730	+		GFF1762	0.20	-1.8
1,791,733	-		GFF1762	0.21	-0.8
1,791,808	-		GFF1762	0.34	-0.7
1,791,839	+		GFF1762	0.40	-0.8