Strain Fitness in Sphingobium sp. HT1-2 around GFF1741

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,766,785	-		GFF1740	0.57	-0.0
1,766,810	+		GFF1740	0.59	+0.2
1,766,810	+		GFF1740	0.59	+1.3
1,766,810	+		GFF1740	0.59	+1.0
1,766,810	+		GFF1740	0.59	-0.4
1,766,818	-		GFF1740	0.59	-0.9
1,766,818	-		GFF1740	0.59	+1.3
1,766,818	-		GFF1740	0.59	+1.4
1,766,818	-		GFF1740	0.59	-2.0
1,766,818	-		GFF1740	0.59	-1.9
1,766,818	-		GFF1740	0.59	-1.5
1,766,825	+		GFF1740	0.60	+0.1
1,766,846	+		GFF1740	0.61	-1.6
1,766,854	-		GFF1740	0.62	-0.4
1,766,864	+		GFF1740	0.62	+0.3
1,766,864	+		GFF1740	0.62	-0.5
1,766,872	-		GFF1740	0.63	-0.0
1,766,889	+		GFF1740	0.64	-0.2
1,766,939	-		GFF1740	0.67	+0.8
1,766,959	-		GFF1740	0.68	-0.3
1,766,969	-		GFF1740	0.69	-1.4
1,766,993	+		GFF1740	0.71	-1.0
1,767,011	+		GFF1740	0.72	-1.4
1,767,021	+		GFF1740	0.72	+0.4
1,767,031	+		GFF1740	0.73	-1.8
1,767,031	+		GFF1740	0.73	+0.2
1,767,031	+		GFF1740	0.73	-1.5
1,767,031	+		GFF1740	0.73	-1.4
1,767,031	+		GFF1740	0.73	+0.9
1,767,031	+		GFF1740	0.73	-0.1
1,767,031	+		GFF1740	0.73	+0.8
1,767,031	+		GFF1740	0.73	+0.1
1,767,031	+		GFF1740	0.73	-1.0
1,767,031	+		GFF1740	0.73	+0.8
1,767,031	+		GFF1740	0.73	+0.2
1,767,039	-		GFF1740	0.73	-0.2
1,767,039	-		GFF1740	0.73	-0.5
1,767,039	-		GFF1740	0.73	+0.9
1,767,039	-		GFF1740	0.73	+0.7
1,767,039	-		GFF1740	0.73	-1.0
1,767,039	-		GFF1740	0.73	-0.2
1,767,039	-		GFF1740	0.73	+1.0
1,767,039	-		GFF1740	0.73	-0.3
1,767,039	-		GFF1740	0.73	-0.2
1,767,039	-		GFF1740	0.73	-0.7
1,767,039	-		GFF1740	0.73	-1.9
1,767,039	-		GFF1740	0.73	-0.6
1,767,039	-		GFF1740	0.73	-0.2
1,767,039	-		GFF1740	0.73	+0.1
1,767,045	+		GFF1740	0.74	-0.1
1,767,047	-		GFF1740	0.74	+0.2
1,767,050	+		GFF1740	0.74	+0.5
1,767,051	-		GFF1740	0.74	-0.5
1,767,051	-		GFF1740	0.74	+0.1
1,767,083	-		GFF1740	0.76	+0.8
1,767,091	+		GFF1740	0.77	-0.1
1,767,101	+		GFF1740	0.77	-0.2
1,767,127	+		GFF1740	0.79	-0.2
1,767,132	+		GFF1740	0.79	-3.0
1,767,140	-		GFF1740	0.80	-1.4
1,767,155	+		GFF1740	0.81	-1.2
1,767,176	-		GFF1740	0.82	-1.3
1,767,192	+		GFF1740	0.83	-0.5
1,767,200	-		GFF1740	0.84	+1.6
1,767,205	+		GFF1740	0.84	+0.2
1,767,213	-		GFF1740	0.85	-2.0
1,767,238	+		GFF1740	0.86	-0.6
1,767,272	+		GFF1740	0.88	+0.0
1,767,273	+		GFF1740	0.88	-0.6
1,767,273	+		GFF1740	0.88	-2.0
1,767,273	+		GFF1740	0.88	-0.8
1,767,273	+		GFF1740	0.88	+0.6
1,767,273	+		GFF1740	0.88	+0.9
1,767,273	+		GFF1740	0.88	-1.2
1,767,277	+		GFF1740	0.89	-0.1
1,767,277	+		GFF1740	0.89	+0.8
1,767,281	-		GFF1740	0.89	-0.4
1,767,281	-		GFF1740	0.89	-0.8
1,767,281	-		GFF1740	0.89	-2.0
1,767,281	-		GFF1740	0.89	+1.0
1,767,281	-		GFF1740	0.89	+0.0
1,767,281	-		GFF1740	0.89	-0.7
1,767,287	+		GFF1740	0.89	+1.7
1,767,295	-		GFF1740	0.90	-1.9
1,767,332	+				-0.4
1,767,332	+				-0.4
1,767,332	+				+1.1
1,767,332	+				-0.7
1,767,344	+				-0.5
1,767,344	+				-1.4
1,767,344	+				+0.8
1,767,363	+				+0.4
1,767,403	+				-0.8
1,767,403	+				-1.5
1,767,405	+				-1.2
1,767,405	+				-2.7
1,767,405	+				+0.1
1,767,405	+				-0.1
1,767,405	+				-0.4
1,767,405	+				+0.2
1,767,405	+				-1.4
1,767,405	+				-0.1
1,767,405	+				+2.1
1,767,406	+				-0.1
1,767,406	-				+0.1
1,767,411	-				-0.5
1,767,413	-				-1.3
1,767,413	-				-0.3
1,767,413	-				-1.8
1,767,443	-				+0.9
1,767,491	-				+0.3
1,767,493	+				-1.8
1,767,493	+				+0.3
1,767,502	-				-0.4
1,767,502	-				-1.3
1,767,502	-				+0.5
1,767,502	-				+0.2
1,767,502	-				+0.8
1,767,502	-				+0.8
1,767,502	-				-1.9
1,767,508	-				-0.2
1,767,564	+				-0.6
1,767,572	-				-2.1
1,767,572	-				+0.8
1,767,573	-				+0.2
1,767,648	-				-1.1
1,767,687	-				-0.5
1,767,731	+				+0.2
1,767,731	+				+1.0
1,767,740	-				+0.7
1,767,749	-				+0.2
1,767,776	+		GFF1741	0.18	+0.7
1,767,778	+		GFF1741	0.20	+0.5
1,767,778	+		GFF1741	0.20	+0.7
1,767,778	+		GFF1741	0.20	-1.5
1,767,778	+		GFF1741	0.20	-1.0
1,767,786	-		GFF1741	0.25	+1.8
1,767,786	-		GFF1741	0.25	+0.2
1,767,786	-		GFF1741	0.25	+0.5
1,767,786	-		GFF1741	0.25	-0.4
1,767,786	-		GFF1741	0.25	+0.5
1,767,828	+		GFF1741	0.56	+1.7
1,767,828	+		GFF1741	0.56	+0.5
1,767,828	+		GFF1741	0.56	-0.4
1,767,828	+		GFF1741	0.56	+0.4
1,767,836	-		GFF1741	0.62	-0.5
1,767,836	-		GFF1741	0.62	+0.5
1,767,836	-		GFF1741	0.62	-0.1
1,767,836	-		GFF1741	0.62	-0.3
1,767,837	-		GFF1741	0.62	-0.2
1,767,837	-		GFF1741	0.62	-0.5
1,767,838	+		GFF1741	0.63	-1.0
1,767,838	+		GFF1741	0.63	-1.9
1,767,846	-		GFF1741	0.69	+0.0
1,767,856	-		GFF1741	0.76	+0.8
1,767,858	+		GFF1741	0.78	-1.0
1,767,858	+		GFF1741	0.78	-1.1
1,767,869	+		GFF1741	0.86	+0.1
1,767,871	-		GFF1741	0.87	+0.1
1,767,913	+				-0.4
1,767,931	+				-0.2
1,767,969	-				+0.2
1,767,975	+				-2.5
1,767,975	+				-0.7
1,767,975	+				-0.6
1,767,975	+				+0.2
1,767,975	+				+0.2
1,767,975	+				-0.8
1,767,975	+				-0.2
1,767,983	-				-1.7
1,767,983	-				-0.1
1,767,983	-				-1.7
1,767,983	-				-0.5
1,767,983	-				-0.9
1,767,983	-				-0.1
1,767,983	-				-1.6
1,767,993	-				-0.1
1,768,008	+		GFF1742	0.11	+0.2
1,768,008	+		GFF1742	0.11	+1.6
1,768,012	-		GFF1742	0.11	-0.4
1,768,016	-		GFF1742	0.12	+0.2
1,768,018	+		GFF1742	0.12	-0.8
1,768,059	-		GFF1742	0.18	-0.4
1,768,059	-		GFF1742	0.18	+1.0
1,768,059	-		GFF1742	0.18	-1.2
1,768,081	-		GFF1742	0.21	+0.4
1,768,082	-		GFF1742	0.21	+0.4
1,768,137	+		GFF1742	0.29	+0.4
1,768,138	+		GFF1742	0.29	+0.1
1,768,138	+		GFF1742	0.29	+0.1
1,768,138	+		GFF1742	0.29	-1.7
1,768,145	-		GFF1742	0.30	-0.4
1,768,146	-		GFF1742	0.30	-2.5
1,768,146	-		GFF1742	0.30	-0.6
1,768,146	-		GFF1742	0.30	-0.2
1,768,152	+		GFF1742	0.31	-1.9
1,768,171	+		GFF1742	0.34	-0.8
1,768,188	-		GFF1742	0.36	-1.7
1,768,199	-		GFF1742	0.38	+1.4
1,768,200	-		GFF1742	0.38	-1.8
1,768,230	-		GFF1742	0.43	-1.6
1,768,256	-		GFF1742	0.46	-0.2
1,768,258	+		GFF1742	0.47	+0.2
1,768,268	-		GFF1742	0.48	+1.9
1,768,304	+		GFF1742	0.53	-1.3
1,768,304	+		GFF1742	0.53	-1.3
1,768,312	-		GFF1742	0.54	-2.2
1,768,312	-		GFF1742	0.54	-0.7
1,768,321	-		GFF1742	0.56	+1.5
1,768,321	-		GFF1742	0.56	-0.3
1,768,326	-		GFF1742	0.56	-0.5
1,768,348	+		GFF1742	0.59	+0.1
1,768,356	+		GFF1742	0.61	+0.0
1,768,356	+		GFF1742	0.61	+0.4
1,768,364	-		GFF1742	0.62	-1.1
1,768,399	+		GFF1742	0.67	+0.8
1,768,407	-		GFF1742	0.68	+0.2
1,768,407	-		GFF1742	0.68	-0.5
1,768,420	+		GFF1742	0.70	-1.9
1,768,452	-		GFF1742	0.74	-0.2
1,768,476	+		GFF1742	0.78	+0.4
1,768,476	+		GFF1742	0.78	-0.0
1,768,484	-		GFF1742	0.79	+0.1
1,768,496	-		GFF1742	0.81	-1.0
1,768,529	+		GFF1742	0.85	+0.5
1,768,537	-		GFF1742	0.87	-2.6
1,768,542	-		GFF1742	0.87	-0.1
1,768,542	-		GFF1742	0.87	-2.1
1,768,551	+		GFF1742	0.89	-2.0
1,768,579	+				-1.3
1,768,579	+				+0.6
1,768,587	-				-1.0
1,768,618	+				+1.2
1,768,618	+				-0.1
1,768,626	-				+0.3
1,768,631	+				-0.2
1,768,639	-				-0.2
1,768,639	-				-1.8
1,768,645	+				-0.6
1,768,656	+				-0.5
1,768,672	+				-0.6
1,768,674	+				+0.4
1,768,674	-				+1.0
1,768,680	-				-0.9
1,768,682	+				+0.3
1,768,709	-				-0.9
1,768,709	-				+0.7
1,768,753	+		GFF1743	0.39	-0.1
1,768,753	+		GFF1743	0.39	+0.0
1,768,763	-		GFF1743	0.49	-0.1
1,768,875	+				+1.0
1,768,883	-				-0.1