Strain Fitness in Sphingobium sp. HT1-2 around GFF1740

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,764,921	-		GFF1738	0.20	-1.4
1,764,939	-		GFF1738	0.22	+0.9
1,764,968	+		GFF1738	0.26	-1.9
1,764,968	+		GFF1738	0.26	-1.4
1,764,976	-		GFF1738	0.27	+0.2
1,764,987	-		GFF1738	0.28	+0.9
1,764,989	+		GFF1738	0.28	+0.2
1,764,997	-		GFF1738	0.29	-1.2
1,764,997	-		GFF1738	0.29	+0.6
1,764,997	-		GFF1738	0.29	-0.7
1,765,004	+		GFF1738	0.30	-0.4
1,765,012	-		GFF1738	0.31	+1.4
1,765,013	-		GFF1738	0.31	-0.5
1,765,015	+		GFF1738	0.31	+1.0
1,765,026	+		GFF1738	0.33	+0.6
1,765,047	+		GFF1738	0.35	+0.4
1,765,059	-		GFF1738	0.37	-0.2
1,765,106	+		GFF1738	0.43	-3.1
1,765,111	+		GFF1738	0.43	-0.4
1,765,111	+		GFF1738	0.43	-0.6
1,765,111	+		GFF1738	0.43	+1.1
1,765,114	-		GFF1738	0.44	-1.1
1,765,119	-		GFF1738	0.44	-1.4
1,765,119	-		GFF1738	0.44	+0.3
1,765,119	-		GFF1738	0.44	-0.1
1,765,148	-		GFF1738	0.48	-0.3
1,765,149	+		GFF1738	0.48	-0.1
1,765,157	+		GFF1738	0.49	+0.7
1,765,157	+		GFF1738	0.49	+1.4
1,765,157	+		GFF1738	0.49	-0.8
1,765,157	+		GFF1738	0.49	+0.3
1,765,165	-		GFF1738	0.50	+0.1
1,765,165	-		GFF1738	0.50	+0.4
1,765,165	-		GFF1738	0.50	-0.5
1,765,165	-		GFF1738	0.50	+0.1
1,765,178	-		GFF1738	0.52	+1.0
1,765,201	-		GFF1738	0.54	-0.5
1,765,203	+		GFF1738	0.55	-0.2
1,765,222	-		GFF1738	0.57	+0.1
1,765,223	-		GFF1738	0.57	+0.2
1,765,223	-		GFF1738	0.57	-0.2
1,765,230	+		GFF1738	0.58	-0.5
1,765,230	+		GFF1738	0.58	-1.7
1,765,233	-		GFF1738	0.58	-0.0
1,765,233	-		GFF1738	0.58	-0.5
1,765,237	+		GFF1738	0.59	+1.7
1,765,238	-		GFF1738	0.59	+0.3
1,765,238	-		GFF1738	0.59	-0.6
1,765,244	+		GFF1738	0.60	-0.7
1,765,244	-		GFF1738	0.60	-1.1
1,765,251	-		GFF1738	0.61	-0.2
1,765,280	+		GFF1738	0.64	-1.4
1,765,288	-		GFF1738	0.65	-0.3
1,765,302	+		GFF1738	0.67	+0.4
1,765,310	-		GFF1738	0.68	-0.5
1,765,310	-		GFF1738	0.68	+0.4
1,765,310	-		GFF1738	0.68	+0.3
1,765,310	-		GFF1738	0.68	+0.1
1,765,313	+		GFF1738	0.68	+1.4
1,765,328	-		GFF1738	0.70	+0.4
1,765,344	-		GFF1738	0.72	-1.4
1,765,365	-		GFF1738	0.75	-1.0
1,765,415	+		GFF1738	0.81	-1.4
1,765,416	+		GFF1738	0.81	-1.3
1,765,423	-		GFF1738	0.82	+0.4
1,765,423	-		GFF1738	0.82	+0.0
1,765,436	-		GFF1738	0.84	+0.3
1,765,467	-		GFF1738	0.87	-1.3
1,765,482	-		GFF1738	0.89	-0.2
1,765,542	+				-0.1
1,765,552	+				+0.8
1,765,554	+				-0.1
1,765,554	+				-0.1
1,765,554	+				-0.2
1,765,562	+				+1.0
1,765,562	-				-0.8
1,765,689	-				+1.2
1,765,691	+		GFF1739	0.10	-0.4
1,765,692	+		GFF1739	0.11	+1.2
1,765,698	-		GFF1739	0.14	+0.7
1,765,700	-		GFF1739	0.15	-1.4
1,765,700	-		GFF1739	0.15	-0.9
1,765,700	-		GFF1739	0.15	-0.9
1,765,700	-		GFF1739	0.15	-0.2
1,765,752	-		GFF1739	0.46	+0.6
1,765,788	+		GFF1739	0.67	-0.4
1,765,793	+		GFF1739	0.70	-0.6
1,765,801	-		GFF1739	0.74	-1.0
1,765,822	+		GFF1739	0.87	+0.4
1,765,822	+		GFF1739	0.87	+0.2
1,765,822	+		GFF1739	0.87	+0.4
1,765,822	+		GFF1739	0.87	-0.5
1,765,822	+		GFF1739	0.87	+0.6
1,765,822	+		GFF1739	0.87	+0.0
1,765,822	+		GFF1739	0.87	+0.9
1,765,830	-				-1.3
1,765,830	-				-0.8
1,765,830	-				+0.6
1,765,830	-				-1.5
1,765,830	-				+0.1
1,765,830	-				-1.2
1,765,833	+				-0.8
1,765,833	+				-1.8
1,765,833	+				+1.2
1,765,838	+				-1.0
1,765,840	-				+0.7
1,765,841	-				+0.1
1,765,841	-				-1.9
1,765,846	-				+0.9
1,765,846	-				+0.2
1,765,846	-				+0.5
1,765,851	+				-0.7
1,765,854	-				+0.4
1,765,856	+				-1.6
1,765,859	-				-0.2
1,765,859	-				-0.0
1,765,860	-				-0.3
1,765,861	+				-1.6
1,765,870	-				-1.6
1,765,890	+				+0.3
1,765,898	-				-1.3
1,765,912	-				-0.1
1,765,914	+				-0.4
1,765,922	-				+0.5
1,765,927	-				-1.8
1,765,928	+				-1.0
1,765,932	+				-1.8
1,765,949	+				+0.1
1,765,964	-				-1.0
1,765,996	+				-0.5
1,765,997	+				+0.3
1,765,997	+				+0.1
1,765,998	-				-0.6
1,766,005	-				-1.7
1,766,005	-				-0.2
1,766,015	-				+0.0
1,766,021	-				+1.4
1,766,034	+				+0.6
1,766,065	+		GFF1740	0.11	-0.0
1,766,065	+		GFF1740	0.11	-1.0
1,766,070	+		GFF1740	0.11	+0.5
1,766,070	+		GFF1740	0.11	+1.4
1,766,070	+		GFF1740	0.11	-0.9
1,766,070	+		GFF1740	0.11	-2.1
1,766,070	+		GFF1740	0.11	+0.2
1,766,078	-		GFF1740	0.12	-1.2
1,766,078	-		GFF1740	0.12	-0.7
1,766,080	-		GFF1740	0.12	+0.0
1,766,093	+		GFF1740	0.13	-0.4
1,766,104	+		GFF1740	0.14	-1.3
1,766,119	-		GFF1740	0.15	-0.1
1,766,152	+		GFF1740	0.17	+0.7
1,766,154	+		GFF1740	0.17	-1.0
1,766,177	+		GFF1740	0.18	-0.5
1,766,183	-		GFF1740	0.19	-2.0
1,766,190	-		GFF1740	0.19	-0.4
1,766,222	+		GFF1740	0.21	+0.4
1,766,222	+		GFF1740	0.21	-0.5
1,766,222	+		GFF1740	0.21	-0.7
1,766,239	+		GFF1740	0.22	+0.5
1,766,251	-		GFF1740	0.23	-0.4
1,766,261	-		GFF1740	0.24	+0.8
1,766,298	+		GFF1740	0.26	+0.1
1,766,306	-		GFF1740	0.27	-1.3
1,766,326	+		GFF1740	0.28	-2.4
1,766,334	-		GFF1740	0.28	+1.4
1,766,339	+		GFF1740	0.29	+0.6
1,766,347	-		GFF1740	0.29	+0.5
1,766,347	-		GFF1740	0.29	-1.1
1,766,349	+		GFF1740	0.29	-0.6
1,766,370	+		GFF1740	0.31	-0.1
1,766,370	+		GFF1740	0.31	-1.8
1,766,405	+		GFF1740	0.33	-0.9
1,766,411	-		GFF1740	0.33	+0.5
1,766,413	-		GFF1740	0.33	-1.6
1,766,413	-		GFF1740	0.33	-1.1
1,766,489	-		GFF1740	0.38	+0.3
1,766,522	+		GFF1740	0.40	+0.3
1,766,522	+		GFF1740	0.40	+1.3
1,766,522	+		GFF1740	0.40	+0.1
1,766,525	-		GFF1740	0.41	+0.6
1,766,525	-		GFF1740	0.41	-0.2
1,766,527	+		GFF1740	0.41	-0.4
1,766,530	-		GFF1740	0.41	-0.4
1,766,538	-		GFF1740	0.41	+0.4
1,766,540	+		GFF1740	0.42	-1.7
1,766,545	+		GFF1740	0.42	+0.9
1,766,545	+		GFF1740	0.42	+1.5
1,766,545	+		GFF1740	0.42	+0.7
1,766,550	+		GFF1740	0.42	-2.1
1,766,551	+		GFF1740	0.42	-0.3
1,766,552	-		GFF1740	0.42	-0.1
1,766,564	+		GFF1740	0.43	-1.6
1,766,564	+		GFF1740	0.43	+0.2
1,766,564	+		GFF1740	0.43	-1.0
1,766,572	-		GFF1740	0.44	+0.1
1,766,599	+		GFF1740	0.45	-2.0
1,766,605	-		GFF1740	0.46	+0.5
1,766,620	+		GFF1740	0.47	-1.0
1,766,627	+		GFF1740	0.47	-0.5
1,766,627	+		GFF1740	0.47	+0.7
1,766,627	+		GFF1740	0.47	-0.4
1,766,635	-		GFF1740	0.48	-2.2
1,766,635	-		GFF1740	0.48	-1.3
1,766,635	-		GFF1740	0.48	+0.1
1,766,635	-		GFF1740	0.48	-0.1
1,766,638	+		GFF1740	0.48	-0.1
1,766,640	+		GFF1740	0.48	-1.2
1,766,640	+		GFF1740	0.48	+0.3
1,766,640	+		GFF1740	0.48	+0.2
1,766,645	+		GFF1740	0.48	-0.1
1,766,645	+		GFF1740	0.48	-0.3
1,766,645	+		GFF1740	0.48	+0.5
1,766,648	-		GFF1740	0.48	-1.0
1,766,648	-		GFF1740	0.48	-0.9
1,766,648	-		GFF1740	0.48	-1.7
1,766,648	-		GFF1740	0.48	+0.1
1,766,648	-		GFF1740	0.48	+0.4
1,766,648	-		GFF1740	0.48	+0.1
1,766,648	-		GFF1740	0.48	-1.1
1,766,648	-		GFF1740	0.48	+0.3
1,766,653	-		GFF1740	0.49	+1.0
1,766,653	-		GFF1740	0.49	-1.5
1,766,653	-		GFF1740	0.49	-0.7
1,766,653	-		GFF1740	0.49	-0.3
1,766,653	-		GFF1740	0.49	-0.6
1,766,653	-		GFF1740	0.49	+1.2
1,766,653	-		GFF1740	0.49	-1.3
1,766,655	+		GFF1740	0.49	+0.7
1,766,656	-		GFF1740	0.49	-0.3
1,766,660	+		GFF1740	0.49	-0.7
1,766,660	-		GFF1740	0.49	-2.7
1,766,662	+		GFF1740	0.49	+0.2
1,766,662	+		GFF1740	0.49	-0.2
1,766,670	-		GFF1740	0.50	-0.9
1,766,670	-		GFF1740	0.50	+0.8
1,766,670	-		GFF1740	0.50	+0.8
1,766,688	+		GFF1740	0.51	-1.1
1,766,714	+		GFF1740	0.53	+0.4
1,766,714	+		GFF1740	0.53	+0.0
1,766,714	+		GFF1740	0.53	-1.2
1,766,717	-		GFF1740	0.53	-0.4
1,766,717	-		GFF1740	0.53	+1.0
1,766,719	+		GFF1740	0.53	-0.3
1,766,726	-		GFF1740	0.53	+0.2
1,766,732	+		GFF1740	0.54	+0.3
1,766,740	-		GFF1740	0.54	-0.1
1,766,740	-		GFF1740	0.54	+0.0
1,766,785	-		GFF1740	0.57	-0.0
1,766,810	+		GFF1740	0.59	+0.2
1,766,810	+		GFF1740	0.59	+1.3
1,766,810	+		GFF1740	0.59	+1.0
1,766,810	+		GFF1740	0.59	-0.4
1,766,818	-		GFF1740	0.59	-0.9
1,766,818	-		GFF1740	0.59	+1.3
1,766,818	-		GFF1740	0.59	+1.4
1,766,818	-		GFF1740	0.59	-2.0
1,766,818	-		GFF1740	0.59	-1.9
1,766,818	-		GFF1740	0.59	-1.5
1,766,825	+		GFF1740	0.60	+0.1
1,766,846	+		GFF1740	0.61	-1.6
1,766,854	-		GFF1740	0.62	-0.4
1,766,864	+		GFF1740	0.62	+0.3
1,766,864	+		GFF1740	0.62	-0.5
1,766,872	-		GFF1740	0.63	-0.0
1,766,889	+		GFF1740	0.64	-0.2
1,766,939	-		GFF1740	0.67	+0.8
1,766,959	-		GFF1740	0.68	-0.3
1,766,969	-		GFF1740	0.69	-1.4
1,766,993	+		GFF1740	0.71	-1.0
1,767,011	+		GFF1740	0.72	-1.4
1,767,021	+		GFF1740	0.72	+0.4
1,767,031	+		GFF1740	0.73	-1.8
1,767,031	+		GFF1740	0.73	+0.2
1,767,031	+		GFF1740	0.73	-1.5
1,767,031	+		GFF1740	0.73	-1.4
1,767,031	+		GFF1740	0.73	+0.9
1,767,031	+		GFF1740	0.73	-0.1
1,767,031	+		GFF1740	0.73	+0.8
1,767,031	+		GFF1740	0.73	+0.1
1,767,031	+		GFF1740	0.73	-1.0
1,767,031	+		GFF1740	0.73	+0.8
1,767,031	+		GFF1740	0.73	+0.2
1,767,039	-		GFF1740	0.73	-0.2
1,767,039	-		GFF1740	0.73	-0.5
1,767,039	-		GFF1740	0.73	+0.9
1,767,039	-		GFF1740	0.73	+0.7
1,767,039	-		GFF1740	0.73	-1.0
1,767,039	-		GFF1740	0.73	-0.2
1,767,039	-		GFF1740	0.73	+1.0
1,767,039	-		GFF1740	0.73	-0.3
1,767,039	-		GFF1740	0.73	-0.2
1,767,039	-		GFF1740	0.73	-0.7
1,767,039	-		GFF1740	0.73	-1.9
1,767,039	-		GFF1740	0.73	-0.6
1,767,039	-		GFF1740	0.73	-0.2
1,767,039	-		GFF1740	0.73	+0.1
1,767,045	+		GFF1740	0.74	-0.1
1,767,047	-		GFF1740	0.74	+0.2
1,767,050	+		GFF1740	0.74	+0.5
1,767,051	-		GFF1740	0.74	-0.5
1,767,051	-		GFF1740	0.74	+0.1
1,767,083	-		GFF1740	0.76	+0.8
1,767,091	+		GFF1740	0.77	-0.1
1,767,101	+		GFF1740	0.77	-0.2
1,767,127	+		GFF1740	0.79	-0.2
1,767,132	+		GFF1740	0.79	-3.0
1,767,140	-		GFF1740	0.80	-1.4
1,767,155	+		GFF1740	0.81	-1.2
1,767,176	-		GFF1740	0.82	-1.3
1,767,192	+		GFF1740	0.83	-0.5
1,767,200	-		GFF1740	0.84	+1.6
1,767,205	+		GFF1740	0.84	+0.2
1,767,213	-		GFF1740	0.85	-2.0
1,767,238	+		GFF1740	0.86	-0.6
1,767,272	+		GFF1740	0.88	+0.0
1,767,273	+		GFF1740	0.88	-0.6
1,767,273	+		GFF1740	0.88	-2.0
1,767,273	+		GFF1740	0.88	-0.8
1,767,273	+		GFF1740	0.88	+0.6
1,767,273	+		GFF1740	0.88	+0.9
1,767,273	+		GFF1740	0.88	-1.2
1,767,277	+		GFF1740	0.89	-0.1
1,767,277	+		GFF1740	0.89	+0.8
1,767,281	-		GFF1740	0.89	-0.4
1,767,281	-		GFF1740	0.89	-0.8
1,767,281	-		GFF1740	0.89	-2.0
1,767,281	-		GFF1740	0.89	+1.0
1,767,281	-		GFF1740	0.89	+0.0
1,767,281	-		GFF1740	0.89	-0.7
1,767,287	+		GFF1740	0.89	+1.7
1,767,295	-		GFF1740	0.90	-1.9
1,767,332	+				-0.4
1,767,332	+				-0.4
1,767,332	+				+1.1
1,767,332	+				-0.7
1,767,344	+				-0.5
1,767,344	+				-1.4
1,767,344	+				+0.8
1,767,363	+				+0.4
1,767,403	+				-0.8
1,767,403	+				-1.5
1,767,405	+				-1.2
1,767,405	+				-2.7
1,767,405	+				+0.1
1,767,405	+				-0.1
1,767,405	+				-0.4
1,767,405	+				+0.2
1,767,405	+				-1.4
1,767,405	+				-0.1
1,767,405	+				+2.1
1,767,406	+				-0.1
1,767,406	-				+0.1
1,767,411	-				-0.5
1,767,413	-				-1.3
1,767,413	-				-0.3
1,767,413	-				-1.8
1,767,443	-				+0.9
1,767,491	-				+0.3
1,767,493	+				-1.8
1,767,493	+				+0.3
1,767,502	-				-0.4
1,767,502	-				-1.3
1,767,502	-				+0.5
1,767,502	-				+0.2
1,767,502	-				+0.8
1,767,502	-				+0.8
1,767,502	-				-1.9
1,767,508	-				-0.2
1,767,564	+				-0.6
1,767,572	-				-2.1
1,767,572	-				+0.8
1,767,573	-				+0.2
1,767,648	-				-1.1
1,767,687	-				-0.5
1,767,731	+				+0.2
1,767,731	+				+1.0
1,767,740	-				+0.7
1,767,749	-				+0.2
1,767,776	+		GFF1741	0.18	+0.7
1,767,778	+		GFF1741	0.20	+0.5
1,767,778	+		GFF1741	0.20	+0.7
1,767,778	+		GFF1741	0.20	-1.5
1,767,778	+		GFF1741	0.20	-1.0
1,767,786	-		GFF1741	0.25	+1.8
1,767,786	-		GFF1741	0.25	+0.2
1,767,786	-		GFF1741	0.25	+0.5
1,767,786	-		GFF1741	0.25	-0.4
1,767,786	-		GFF1741	0.25	+0.5
1,767,828	+		GFF1741	0.56	+1.7
1,767,828	+		GFF1741	0.56	+0.5
1,767,828	+		GFF1741	0.56	-0.4
1,767,828	+		GFF1741	0.56	+0.4
1,767,836	-		GFF1741	0.62	-0.5
1,767,836	-		GFF1741	0.62	+0.5
1,767,836	-		GFF1741	0.62	-0.1
1,767,836	-		GFF1741	0.62	-0.3
1,767,837	-		GFF1741	0.62	-0.2
1,767,837	-		GFF1741	0.62	-0.5
1,767,838	+		GFF1741	0.63	-1.0
1,767,838	+		GFF1741	0.63	-1.9
1,767,846	-		GFF1741	0.69	+0.0
1,767,856	-		GFF1741	0.76	+0.8
1,767,858	+		GFF1741	0.78	-1.0
1,767,858	+		GFF1741	0.78	-1.1
1,767,869	+		GFF1741	0.86	+0.1
1,767,871	-		GFF1741	0.87	+0.1
1,767,913	+				-0.4
1,767,931	+				-0.2
1,767,969	-				+0.2
1,767,975	+				-2.5
1,767,975	+				-0.7
1,767,975	+				-0.6
1,767,975	+				+0.2
1,767,975	+				+0.2
1,767,975	+				-0.8
1,767,975	+				-0.2
1,767,983	-				-1.7
1,767,983	-				-0.1
1,767,983	-				-1.7
1,767,983	-				-0.5
1,767,983	-				-0.9
1,767,983	-				-0.1
1,767,983	-				-1.6
1,767,993	-				-0.1
1,768,008	+		GFF1742	0.11	+0.2
1,768,008	+		GFF1742	0.11	+1.6
1,768,012	-		GFF1742	0.11	-0.4
1,768,016	-		GFF1742	0.12	+0.2
1,768,018	+		GFF1742	0.12	-0.8
1,768,059	-		GFF1742	0.18	-0.4
1,768,059	-		GFF1742	0.18	+1.0
1,768,059	-		GFF1742	0.18	-1.2
1,768,081	-		GFF1742	0.21	+0.4
1,768,082	-		GFF1742	0.21	+0.4
1,768,137	+		GFF1742	0.29	+0.4
1,768,138	+		GFF1742	0.29	+0.1
1,768,138	+		GFF1742	0.29	+0.1
1,768,138	+		GFF1742	0.29	-1.7
1,768,145	-		GFF1742	0.30	-0.4
1,768,146	-		GFF1742	0.30	-2.5
1,768,146	-		GFF1742	0.30	-0.6
1,768,146	-		GFF1742	0.30	-0.2
1,768,152	+		GFF1742	0.31	-1.9
1,768,171	+		GFF1742	0.34	-0.8
1,768,188	-		GFF1742	0.36	-1.7
1,768,199	-		GFF1742	0.38	+1.4
1,768,200	-		GFF1742	0.38	-1.8
1,768,230	-		GFF1742	0.43	-1.6
1,768,256	-		GFF1742	0.46	-0.2
1,768,258	+		GFF1742	0.47	+0.2
1,768,268	-		GFF1742	0.48	+1.9
1,768,304	+		GFF1742	0.53	-1.3
1,768,304	+		GFF1742	0.53	-1.3
1,768,312	-		GFF1742	0.54	-2.2
1,768,312	-		GFF1742	0.54	-0.7
1,768,321	-		GFF1742	0.56	+1.5
1,768,321	-		GFF1742	0.56	-0.3
1,768,326	-		GFF1742	0.56	-0.5
1,768,348	+		GFF1742	0.59	+0.1
1,768,356	+		GFF1742	0.61	+0.0
1,768,356	+		GFF1742	0.61	+0.4
1,768,364	-		GFF1742	0.62	-1.1
1,768,399	+		GFF1742	0.67	+0.8
1,768,407	-		GFF1742	0.68	+0.2
1,768,407	-		GFF1742	0.68	-0.5
1,768,420	+		GFF1742	0.70	-1.9
1,768,452	-		GFF1742	0.74	-0.2