Strain Fitness in Sphingobium sp. HT1-2 around GFF1727

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,753,015	+		GFF1725	0.79	-1.7
1,753,015	+		GFF1725	0.79	+0.1
1,753,015	+		GFF1725	0.79	+0.2
1,753,023	-		GFF1725	0.79	+0.6
1,753,052	+		GFF1725	0.80	-0.3
1,753,058	-		GFF1725	0.80	+0.0
1,753,073	+		GFF1725	0.81	+0.2
1,753,088	-		GFF1725	0.81	+1.0
1,753,094	+		GFF1725	0.81	-0.7
1,753,102	-		GFF1725	0.82	-2.4
1,753,106	+		GFF1725	0.82	-0.3
1,753,114	-		GFF1725	0.82	+1.0
1,753,117	+		GFF1725	0.82	-2.4
1,753,122	+		GFF1725	0.82	-1.2
1,753,124	+		GFF1725	0.82	+0.7
1,753,130	-		GFF1725	0.83	+1.1
1,753,132	+		GFF1725	0.83	+0.3
1,753,132	+		GFF1725	0.83	-0.4
1,753,132	+		GFF1725	0.83	+1.2
1,753,132	+		GFF1725	0.83	-1.5
1,753,139	+		GFF1725	0.83	-0.4
1,753,140	-		GFF1725	0.83	+2.5
1,753,140	-		GFF1725	0.83	+0.3
1,753,140	-		GFF1725	0.83	+0.0
1,753,166	+		GFF1725	0.84	-2.1
1,753,174	-		GFF1725	0.84	-1.0
1,753,185	-		GFF1725	0.85	+1.2
1,753,207	+		GFF1725	0.85	+0.1
1,753,215	+		GFF1725	0.86	-0.2
1,753,230	+		GFF1725	0.86	+0.4
1,753,230	+		GFF1725	0.86	+0.6
1,753,230	+		GFF1725	0.86	-1.0
1,753,230	+		GFF1725	0.86	-0.5
1,753,230	+		GFF1725	0.86	-1.7
1,753,230	+		GFF1725	0.86	+0.4
1,753,240	-		GFF1725	0.86	+0.0
1,753,275	+		GFF1725	0.88	-1.1
1,753,313	-		GFF1725	0.89	-1.4
1,753,313	-		GFF1725	0.89	-1.3
1,753,401	+				-0.1
1,753,411	-				-1.0
1,753,454	+				+0.3
1,753,454	+				-1.4
1,753,462	-				-0.5
1,753,462	-				-1.0
1,753,467	+				-0.7
1,753,472	+				+0.4
1,753,478	+				+0.5
1,753,505	+				-0.2
1,753,505	+				+0.4
1,753,505	+				+0.1
1,753,505	+				-1.6
1,753,505	+				-0.2
1,753,508	-				-0.8
1,753,510	+				+0.1
1,753,513	-				-1.4
1,753,513	-				+0.8
1,753,513	-				-0.3
1,753,515	+				-0.2
1,753,515	+				+1.7
1,753,515	+				-0.6
1,753,515	+				-0.3
1,753,515	+				+0.7
1,753,518	-				-1.1
1,753,523	-				-0.4
1,753,523	-				-0.4
1,753,523	-				+0.7
1,753,523	-				-0.3
1,753,523	-				+0.6
1,753,523	-				+1.4
1,753,523	-				-1.5
1,753,523	-				+1.3
1,753,523	-				+0.5
1,753,523	-				-1.0
1,753,530	+				+1.4
1,753,564	-				-0.4
1,753,571	-				-0.3
1,753,574	+				-1.6
1,753,576	-				-0.8
1,753,576	-				-2.1
1,753,576	-				-2.3
1,753,576	-				-0.9
1,753,581	-				-2.2
1,753,582	-				-0.1
1,753,582	-				+0.2
1,753,605	+				-0.3
1,753,605	+				-2.5
1,753,610	+				-0.8
1,753,610	+				-1.5
1,753,613	-				+0.3
1,753,613	-				-1.1
1,753,613	-				-1.5
1,753,623	-				+1.4
1,753,655	-				+1.0
1,753,670	-				+0.6
1,753,670	-				+0.4
1,753,675	+				-0.5
1,753,677	+				+1.3
1,753,842	+		GFF1726	0.80	-0.1
1,753,881	+				+0.8
1,753,896	-				+0.6
1,753,896	-				-0.4
1,753,896	-				-2.3
1,753,909	-				+0.3
1,753,958	+				-0.5
1,753,958	+				-0.3
1,753,963	+				+1.1
1,753,963	+				-2.0
1,753,963	+				-0.1
1,753,963	+				-0.5
1,753,968	+				-0.8
1,753,968	+				-0.1
1,753,971	-				-1.2
1,753,971	-				-2.4
1,753,971	-				-0.2
1,753,971	-				+1.4
1,753,971	-				-0.5
1,753,973	+				+0.2
1,753,976	-				+0.6
1,753,976	-				-1.1
1,753,978	+				-0.3
1,753,986	-				-1.9
1,753,986	-				+1.1
1,753,994	-				+0.1
1,754,023	+				-0.3
1,754,043	+				-1.3
1,754,043	+				+1.1
1,754,051	-				-0.5
1,754,051	-				-0.8
1,754,051	-				-1.2
1,754,065	-				+0.8
1,754,072	-				+0.6
1,754,077	+				+0.0
1,754,082	+				-1.9
1,754,199	+		GFF1727	0.14	-1.7
1,754,201	-		GFF1727	0.14	+1.3
1,754,228	+		GFF1727	0.16	+1.5
1,754,300	-		GFF1727	0.22	+1.1
1,754,307	+		GFF1727	0.22	+0.8
1,754,310	+		GFF1727	0.22	+0.5
1,754,310	+		GFF1727	0.22	-0.1
1,754,313	-		GFF1727	0.22	-0.5
1,754,313	-		GFF1727	0.22	-1.1
1,754,318	-		GFF1727	0.23	-0.8
1,754,325	+		GFF1727	0.23	+0.3
1,754,325	+		GFF1727	0.23	-2.3
1,754,352	+		GFF1727	0.25	-0.2
1,754,352	+		GFF1727	0.25	-1.1
1,754,353	+		GFF1727	0.25	-0.8
1,754,355	-		GFF1727	0.25	-0.9
1,754,357	+		GFF1727	0.26	+0.8
1,754,360	-		GFF1727	0.26	+0.9
1,754,367	+		GFF1727	0.26	+1.5
1,754,367	+		GFF1727	0.26	+0.1
1,754,367	+		GFF1727	0.26	-2.3
1,754,375	-		GFF1727	0.27	-1.3
1,754,375	-		GFF1727	0.27	-1.6
1,754,383	+		GFF1727	0.27	-1.7
1,754,383	+		GFF1727	0.27	-0.5
1,754,383	+		GFF1727	0.27	+0.4
1,754,391	-		GFF1727	0.28	+0.6
1,754,391	-		GFF1727	0.28	-0.7
1,754,391	-		GFF1727	0.28	-0.2
1,754,449	+		GFF1727	0.32	-2.3
1,754,449	+		GFF1727	0.32	+0.3
1,754,457	-		GFF1727	0.33	+0.9
1,754,468	-		GFF1727	0.33	+0.2
1,754,502	-		GFF1727	0.36	+1.4
1,754,508	+		GFF1727	0.36	-0.5
1,754,512	-		GFF1727	0.37	-1.2
1,754,516	-		GFF1727	0.37	-0.4
1,754,516	-		GFF1727	0.37	-1.1
1,754,516	-		GFF1727	0.37	-1.8
1,754,550	-		GFF1727	0.39	+0.8
1,754,553	+		GFF1727	0.40	+0.5
1,754,563	-		GFF1727	0.40	+0.4
1,754,595	+		GFF1727	0.43	-0.2
1,754,595	+		GFF1727	0.43	-0.7
1,754,595	+		GFF1727	0.43	+0.2
1,754,603	-		GFF1727	0.43	-0.2
1,754,636	-		GFF1727	0.45	-2.1
1,754,639	+		GFF1727	0.46	-0.3
1,754,639	+		GFF1727	0.46	+0.0
1,754,639	+		GFF1727	0.46	-0.1
1,754,640	+		GFF1727	0.46	-1.1
1,754,642	-		GFF1727	0.46	+0.2
1,754,654	+		GFF1727	0.47	+0.4
1,754,654	+		GFF1727	0.47	-0.2
1,754,654	+		GFF1727	0.47	-0.8
1,754,654	+		GFF1727	0.47	-1.0
1,754,654	+		GFF1727	0.47	-0.7
1,754,662	-		GFF1727	0.47	-0.5
1,754,662	-		GFF1727	0.47	-0.6
1,754,662	-		GFF1727	0.47	+0.9
1,754,662	-		GFF1727	0.47	-0.4
1,754,662	-		GFF1727	0.47	-0.3
1,754,662	-		GFF1727	0.47	-0.6
1,754,662	-		GFF1727	0.47	-0.6
1,754,663	-		GFF1727	0.47	-1.3
1,754,669	+		GFF1727	0.48	+0.6
1,754,669	-		GFF1727	0.48	-0.7
1,754,669	-		GFF1727	0.48	-2.6
1,754,677	-		GFF1727	0.48	-2.2
1,754,677	-		GFF1727	0.48	+0.4
1,754,680	+		GFF1727	0.49	+0.6
1,754,713	-		GFF1727	0.51	-0.5
1,754,716	+		GFF1727	0.51	-0.3
1,754,724	+		GFF1727	0.52	+1.2
1,754,732	-		GFF1727	0.52	+1.0
1,754,740	-		GFF1727	0.53	-0.9
1,754,757	-		GFF1727	0.54	+0.3
1,754,759	+		GFF1727	0.54	-1.2
1,754,764	-		GFF1727	0.55	+0.8
1,754,784	+		GFF1727	0.56	+1.6
1,754,786	-		GFF1727	0.56	-0.6
1,754,828	-		GFF1727	0.59	+1.0
1,754,878	-		GFF1727	0.63	+0.9
1,754,895	+		GFF1727	0.64	+0.5
1,754,903	-		GFF1727	0.64	+0.6
1,754,903	-		GFF1727	0.64	+1.3
1,754,903	-		GFF1727	0.64	-0.1
1,754,934	+		GFF1727	0.67	+0.5
1,754,941	-		GFF1727	0.67	+0.2
1,754,978	+		GFF1727	0.70	+0.6
1,755,028	+		GFF1727	0.73	-0.6
1,755,033	+		GFF1727	0.74	-0.1
1,755,038	+		GFF1727	0.74	+1.0
1,755,038	+		GFF1727	0.74	+0.2
1,755,043	+		GFF1727	0.74	-0.2
1,755,043	+		GFF1727	0.74	-2.2
1,755,043	+		GFF1727	0.74	+0.2
1,755,052	-		GFF1727	0.75	-0.1
1,755,061	-		GFF1727	0.76	-0.7
1,755,069	+		GFF1727	0.76	-2.8
1,755,079	+		GFF1727	0.77	-1.1
1,755,089	+		GFF1727	0.78	+0.3
1,755,095	-		GFF1727	0.78	-1.0
1,755,105	-		GFF1727	0.79	+0.0
1,755,114	+		GFF1727	0.79	+0.7
1,755,114	+		GFF1727	0.79	+0.5
1,755,114	+		GFF1727	0.79	+0.3
1,755,114	+		GFF1727	0.79	-0.8
1,755,114	+		GFF1727	0.79	-0.5
1,755,114	+		GFF1727	0.79	-0.1
1,755,117	-		GFF1727	0.80	-1.3
1,755,122	-		GFF1727	0.80	+0.3
1,755,122	-		GFF1727	0.80	+0.1
1,755,122	-		GFF1727	0.80	+0.0
1,755,122	-		GFF1727	0.80	-0.2
1,755,122	-		GFF1727	0.80	+0.1
1,755,126	+		GFF1727	0.80	+0.2
1,755,126	+		GFF1727	0.80	+0.1
1,755,126	+		GFF1727	0.80	+0.7
1,755,126	+		GFF1727	0.80	+0.0
1,755,126	+		GFF1727	0.80	+0.3
1,755,126	+		GFF1727	0.80	-1.4
1,755,126	-		GFF1727	0.80	+0.8
1,755,128	+		GFF1727	0.80	-0.5
1,755,129	-		GFF1727	0.81	-2.6
1,755,134	-		GFF1727	0.81	-0.7
1,755,134	-		GFF1727	0.81	+1.8
1,755,134	-		GFF1727	0.81	-0.1
1,755,180	+		GFF1727	0.84	-0.7
1,755,188	-		GFF1727	0.85	+0.3
1,755,253	-		GFF1727	0.89	+0.2
1,755,255	+		GFF1727	0.90	-2.1
1,755,255	+		GFF1727	0.90	+0.9
1,755,333	-				-0.1
1,755,349	-				-1.6
1,755,388	+				-0.4
1,755,395	+				-1.4
1,755,410	-				-1.3
1,755,447	+		GFF1728	0.13	+0.3
1,755,463	+		GFF1728	0.17	-0.7
1,755,507	+		GFF1728	0.28	-1.6
1,755,508	-		GFF1728	0.28	-1.1
1,755,541	+		GFF1728	0.37	-1.6
1,755,549	+		GFF1728	0.39	-1.6
1,755,549	+		GFF1728	0.39	+0.2
1,755,549	+		GFF1728	0.39	-0.6
1,755,557	-		GFF1728	0.41	+1.2
1,755,557	-		GFF1728	0.41	+0.4
1,755,557	-		GFF1728	0.41	-0.1
1,755,557	-		GFF1728	0.41	-0.7
1,755,567	-		GFF1728	0.44	+1.1
1,755,609	+		GFF1728	0.55	+0.4
1,755,617	-		GFF1728	0.57	+0.3
1,755,619	+		GFF1728	0.57	-0.3
1,755,624	+		GFF1728	0.58	+1.0
1,755,624	+		GFF1728	0.58	-0.5
1,755,624	+		GFF1728	0.58	+1.1
1,755,624	+		GFF1728	0.58	-1.3
1,755,627	-		GFF1728	0.59	-0.4
1,755,630	-		GFF1728	0.60	-0.7
1,755,632	-		GFF1728	0.60	-1.8
1,755,632	-		GFF1728	0.60	-0.7
1,755,632	-		GFF1728	0.60	-0.5
1,755,645	+		GFF1728	0.64	+0.5
1,755,645	+		GFF1728	0.64	+0.1
1,755,652	-		GFF1728	0.66	+0.7
1,755,673	+		GFF1728	0.71	-0.6
1,755,693	-		GFF1728	0.76	-0.1
1,755,701	+		GFF1728	0.78	-0.4
1,755,709	-		GFF1728	0.80	-0.0
1,755,755	-				+1.2
1,755,755	-				+0.8
1,755,757	+				-0.3
1,755,757	+				+1.2
1,755,768	+				-1.8
1,755,778	+				+0.4
1,755,824	-		GFF1729	0.17	-0.3
1,755,844	-		GFF1729	0.28	-2.9
1,755,860	-		GFF1729	0.37	+0.5
1,755,861	+		GFF1729	0.38	-3.1
1,755,870	-		GFF1729	0.43	-0.6
1,755,874	-		GFF1729	0.45	+0.6
1,755,875	+		GFF1729	0.46	-1.2
1,755,880	+		GFF1729	0.49	+2.0
1,755,888	-		GFF1729	0.53	-0.4
1,755,905	+		GFF1729	0.63	+0.6
1,755,905	+		GFF1729	0.63	-0.1
1,755,905	+		GFF1729	0.63	-0.6
1,755,913	-		GFF1729	0.67	+0.1
1,755,913	-		GFF1729	0.67	-0.4
1,755,913	-		GFF1729	0.67	-0.4
1,755,913	-		GFF1729	0.67	-0.3
1,755,913	-		GFF1729	0.67	-0.2
1,755,936	-		GFF1729	0.80	+0.1
1,755,966	+				+1.3
1,755,984	-				+0.1
1,755,984	-				-1.6
1,755,984	-				+0.7
1,755,994	+				+0.0
1,755,994	-				+0.2
1,756,041	+				+1.2
1,756,041	+				+0.2
1,756,041	+				-0.2
1,756,041	+				-1.2
1,756,049	-				+0.2
1,756,049	-				+0.9
1,756,049	-				-1.5
1,756,059	+				-0.9
1,756,059	+				+0.5
1,756,060	+				+0.4
1,756,060	+				+0.9
1,756,061	+				+0.0
1,756,067	-				-0.4
1,756,068	-				-0.3
1,756,075	+				+0.7
1,756,075	+				+0.2
1,756,075	+				-1.4
1,756,083	-				+1.2
1,756,089	+				-0.7
1,756,094	+				-0.3
1,756,121	-				+1.5
1,756,128	-				+0.2
1,756,142	+				+0.2
1,756,189	-				-1.0
1,756,192	+				-0.4
1,756,192	+				-0.9
1,756,192	+				+0.3
1,756,198	-				-1.3
1,756,198	-				-0.9
1,756,224	-		GFF1730	0.11	-0.3
1,756,238	-		GFF1730	0.12	-0.7
1,756,238	-		GFF1730	0.12	-0.0
1,756,252	+		GFF1730	0.13	+0.5
1,756,257	-		GFF1730	0.14	-1.1
1,756,262	-		GFF1730	0.14	-1.9
1,756,266	-		GFF1730	0.14	-0.6
1,756,299	+		GFF1730	0.16	+0.1
1,756,325	+		GFF1730	0.18	+0.4
1,756,332	-		GFF1730	0.18	-2.0
1,756,332	-		GFF1730	0.18	-0.3
1,756,354	-		GFF1730	0.20	-0.3
1,756,364	+		GFF1730	0.20	-0.8
1,756,368	+		GFF1730	0.21	-0.1
1,756,374	+		GFF1730	0.21	+0.9
1,756,382	-		GFF1730	0.21	+0.0
1,756,384	+		GFF1730	0.22	+0.4