Strain Fitness in Sphingobium sp. HT1-2 around GFF1616

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,641,045	+		GFF1613	0.58	-0.6
1,641,045	+		GFF1613	0.58	+0.4
1,641,048	-		GFF1613	0.58	-0.0
1,641,053	-		GFF1613	0.59	-0.3
1,641,055	+		GFF1613	0.59	-2.5
1,641,055	-		GFF1613	0.59	-1.0
1,641,064	-		GFF1613	0.60	-2.3
1,641,084	+		GFF1613	0.63	+0.7
1,641,084	+		GFF1613	0.63	-0.5
1,641,089	+		GFF1613	0.63	+0.2
1,641,092	+		GFF1613	0.63	-1.5
1,641,092	-		GFF1613	0.63	+1.5
1,641,093	+		GFF1613	0.64	-0.3
1,641,094	+		GFF1613	0.64	-0.5
1,641,094	+		GFF1613	0.64	+0.1
1,641,100	-		GFF1613	0.64	+0.4
1,641,101	-		GFF1613	0.65	-0.2
1,641,135	-		GFF1613	0.68	-0.8
1,641,143	+		GFF1613	0.69	-0.6
1,641,175	+		GFF1613	0.73	+0.4
1,641,201	-		GFF1613	0.76	-1.3
1,641,207	+		GFF1613	0.77	+1.1
1,641,234	+		GFF1613	0.80	+0.6
1,641,237	-		GFF1613	0.80	-0.9
1,641,258	-		GFF1613	0.82	-1.6
1,641,268	+		GFF1613	0.84	+0.0
1,641,307	+		GFF1613	0.88	-0.7
1,641,344	+				-0.6
1,641,348	+				+0.8
1,641,356	-				-1.4
1,641,356	-				-0.4
1,641,367	+				-0.0
1,641,367	+				+1.0
1,641,367	+				+1.2
1,641,367	+				-0.3
1,641,367	+				-0.0
1,641,375	-				-0.6
1,641,375	-				-0.6
1,641,430	+				-0.8
1,641,454	+				+0.4
1,641,458	-				-1.1
1,641,462	+				+0.7
1,641,462	+				-0.8
1,641,470	-				-0.8
1,641,504	-				-0.6
1,641,533	+		GFF1614	0.20	-1.1
1,641,547	+		GFF1614	0.28	-2.4
1,641,555	-		GFF1614	0.33	+0.7
1,641,561	-		GFF1614	0.36	-1.0
1,641,567	-		GFF1614	0.40	+0.4
1,641,577	+		GFF1614	0.45	-0.8
1,641,598	+		GFF1614	0.57	-1.5
1,641,606	-		GFF1614	0.62	+0.2
1,641,615	-		GFF1614	0.67	+0.5
1,641,615	-		GFF1614	0.67	+0.1
1,641,620	-		GFF1614	0.70	+0.4
1,641,678	+				+0.4
1,641,714	-				+0.7
1,641,806	-				+0.1
1,641,857	-				-1.4
1,641,862	-				+1.2
1,641,867	-				+1.4
1,641,867	-				-0.8
1,641,900	+				+0.2
1,641,936	+				+0.4
1,642,019	-				+0.4
1,642,019	-				+1.1
1,642,025	-				-0.8
1,642,025	-				+0.2
1,642,025	-				+0.1
1,642,092	+				+0.3
1,642,100	-				+0.2
1,642,100	-				+1.0
1,642,132	+				-0.2
1,642,132	+				-0.8
1,642,137	+				-0.7
1,642,140	-				-1.4
1,642,140	-				+0.4
1,642,140	-				-0.1
1,642,170	+		GFF1616	0.12	-1.1
1,642,170	+		GFF1616	0.12	-0.6
1,642,179	+		GFF1616	0.13	+0.1
1,642,186	+		GFF1616	0.14	+0.3
1,642,186	+		GFF1616	0.14	-0.9
1,642,186	+		GFF1616	0.14	+0.0
1,642,186	+		GFF1616	0.14	-2.6
1,642,188	+		GFF1616	0.14	+0.2
1,642,188	+		GFF1616	0.14	-1.8
1,642,192	+		GFF1616	0.14	+1.1
1,642,194	-		GFF1616	0.15	-0.8
1,642,194	-		GFF1616	0.15	-0.2
1,642,194	-		GFF1616	0.15	-1.5
1,642,194	-		GFF1616	0.15	-0.2
1,642,194	-		GFF1616	0.15	-1.2
1,642,196	-		GFF1616	0.15	-0.4
1,642,196	-		GFF1616	0.15	-0.6
1,642,206	+		GFF1616	0.16	-1.9
1,642,206	+		GFF1616	0.16	-0.4
1,642,206	+		GFF1616	0.16	-1.5
1,642,206	+		GFF1616	0.16	-0.3
1,642,214	-		GFF1616	0.17	-1.1
1,642,214	-		GFF1616	0.17	+0.1
1,642,214	-		GFF1616	0.17	+0.8
1,642,214	-		GFF1616	0.17	-1.0
1,642,214	-		GFF1616	0.17	-0.5
1,642,214	-		GFF1616	0.17	-0.2
1,642,214	-		GFF1616	0.17	+0.9
1,642,214	-		GFF1616	0.17	+0.2
1,642,243	+		GFF1616	0.19	-0.3
1,642,251	-		GFF1616	0.20	-1.5
1,642,301	-		GFF1616	0.25	+0.5
1,642,310	-		GFF1616	0.26	-0.8
1,642,357	-		GFF1616	0.30	-1.2
1,642,377	-		GFF1616	0.32	+1.4
1,642,403	+		GFF1616	0.35	+0.5
1,642,416	-		GFF1616	0.36	+1.0
1,642,457	-		GFF1616	0.40	-1.8
1,642,461	+		GFF1616	0.40	-1.2
1,642,469	-		GFF1616	0.41	-1.7
1,642,497	+		GFF1616	0.44	+0.5
1,642,516	+		GFF1616	0.46	-0.7
1,642,541	+		GFF1616	0.48	+0.1
1,642,547	-		GFF1616	0.49	-0.1
1,642,565	+		GFF1616	0.50	+0.3
1,642,583	-		GFF1616	0.52	-1.2
1,642,585	+		GFF1616	0.52	-1.3
1,642,591	-		GFF1616	0.53	+0.6
1,642,591	-		GFF1616	0.53	-0.9
1,642,591	-		GFF1616	0.53	-1.8
1,642,593	-		GFF1616	0.53	-0.2
1,642,593	-		GFF1616	0.53	-1.5
1,642,598	+		GFF1616	0.53	+0.9
1,642,605	+		GFF1616	0.54	-0.3
1,642,606	-		GFF1616	0.54	+0.3
1,642,632	+		GFF1616	0.57	-0.3
1,642,664	+		GFF1616	0.60	-0.7
1,642,696	-		GFF1616	0.63	-0.2
1,642,745	+		GFF1616	0.68	+1.4
1,642,751	+		GFF1616	0.68	-1.5
1,642,751	+		GFF1616	0.68	+0.3
1,642,754	-		GFF1616	0.68	+0.0
1,642,756	+		GFF1616	0.69	+0.5
1,642,756	+		GFF1616	0.69	-1.1
1,642,757	+		GFF1616	0.69	-2.2
1,642,757	+		GFF1616	0.69	-0.7
1,642,759	-		GFF1616	0.69	+0.9
1,642,759	-		GFF1616	0.69	-2.3
1,642,764	-		GFF1616	0.69	+0.4
1,642,764	-		GFF1616	0.69	+1.6
1,642,765	-		GFF1616	0.69	+0.2
1,642,774	+		GFF1616	0.70	-0.7
1,642,793	+		GFF1616	0.72	-0.8
1,642,829	+		GFF1616	0.76	-1.0
1,642,831	+		GFF1616	0.76	-0.5
1,642,831	+		GFF1616	0.76	+0.5
1,642,836	-		GFF1616	0.76	+0.2
1,642,848	+		GFF1616	0.77	+0.5
1,642,862	+		GFF1616	0.79	+0.9
1,642,870	-		GFF1616	0.80	-1.3
1,642,883	+		GFF1616	0.81	+1.1
1,642,883	+		GFF1616	0.81	-0.8
1,642,883	+		GFF1616	0.81	-1.1
1,642,891	-		GFF1616	0.82	-0.8
1,642,891	-		GFF1616	0.82	+0.2
1,642,904	+		GFF1616	0.83	-1.8
1,642,909	+		GFF1616	0.83	-1.5
1,642,912	-		GFF1616	0.84	-1.0
1,642,912	-		GFF1616	0.84	+1.3
1,642,923	+		GFF1616	0.85	+1.4
1,642,931	-		GFF1616	0.85	+0.4
1,642,937	+		GFF1616	0.86	+0.8
1,642,965	+		GFF1616	0.89	-0.2
1,642,994	-				-0.8
1,643,008	+				-0.0
1,643,021	+				+0.9
1,643,029	-				-0.4
1,643,084	+				+1.4
1,643,092	-				-0.5
1,643,112	-				-2.4
1,643,112	-				+0.1
1,643,116	+				-0.6
1,643,124	-				-0.2
1,643,126	+				+0.5
1,643,126	+				+0.3
1,643,126	+				+0.1
1,643,134	-				+0.0
1,643,134	-				-0.1
1,643,134	-				-1.9
1,643,134	-				+0.4
1,643,134	-				-0.8
1,643,134	-				-0.1
1,643,134	-				-1.0
1,643,134	-				-0.4
1,643,134	-				-1.6
1,643,145	-				+0.7
1,643,184	+				+0.7
1,643,199	-				-0.2
1,643,235	-				-1.3
1,643,235	-				-0.3
1,643,339	+		GFF1617	0.11	-0.2
1,643,344	+		GFF1617	0.11	-0.3
1,643,353	+		GFF1617	0.11	-1.8
1,643,463	+		GFF1617	0.18	-1.8
1,643,480	+		GFF1617	0.19	-1.5
1,643,486	+		GFF1617	0.19	-0.6
1,643,507	-		GFF1617	0.20	-0.4
1,643,528	-		GFF1617	0.21	-0.3
1,643,528	-		GFF1617	0.21	+0.0
1,643,569	+		GFF1617	0.24	+0.8
1,643,577	-		GFF1617	0.24	+0.9
1,643,646	+		GFF1617	0.28	+0.4
1,643,681	+		GFF1617	0.30	-0.3
1,643,827	+		GFF1617	0.39	-1.5