Strain Fitness in Sphingobium sp. HT1-2 around GFF1584

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,612,659	+		GFF1582	0.65	-1.8
1,612,664	+		GFF1582	0.66	+1.0
1,612,667	-		GFF1582	0.66	+1.0
1,612,667	-		GFF1582	0.66	-0.5
1,612,667	-		GFF1582	0.66	+0.2
1,612,679	+		GFF1582	0.69	-1.8
1,612,701	+		GFF1582	0.73	-0.5
1,612,701	+		GFF1582	0.73	+0.1
1,612,707	-		GFF1582	0.75	-1.0
1,612,707	-		GFF1582	0.75	-0.5
1,612,747	+		GFF1582	0.83	+0.2
1,612,750	-		GFF1582	0.84	+0.1
1,612,784	-				+0.2
1,612,790	+				+0.2
1,612,797	+				+1.2
1,612,798	-				-0.1
1,612,800	-				+0.8
1,612,805	-				+0.8
1,612,823	+				+0.1
1,612,823	+				-1.0
1,612,828	+				-1.0
1,612,828	+				-0.8
1,612,836	-				-0.9
1,612,836	-				-0.9
1,612,842	+				-3.5
1,612,868	+				-1.5
1,612,872	+				-3.2
1,612,988	+		GFF1583	0.22	-1.3
1,613,091	+		GFF1583	0.37	-1.6
1,613,198	+		GFF1583	0.53	-1.3
1,613,198	+		GFF1583	0.53	-1.6
1,613,201	-		GFF1583	0.53	-1.5
1,613,282	-		GFF1583	0.65	-1.3
1,613,303	-		GFF1583	0.68	-2.2
1,613,308	-		GFF1583	0.69	-0.3
1,613,309	-		GFF1583	0.69	-1.9
1,613,375	-		GFF1583	0.78	-1.5
1,613,510	+				-1.2
1,613,518	-				-1.7
1,613,520	+				-0.8
1,613,520	+				-0.3
1,613,520	+				-0.0
1,613,520	+				-0.9
1,613,528	-				+0.1
1,613,528	-				+0.2
1,613,532	+				+0.3
1,613,572	+				+0.8
1,613,572	+				-1.2
1,613,573	-				+0.1
1,613,577	+				-0.8
1,613,580	-				+0.1
1,613,580	-				+0.2
1,613,585	-				-2.4
1,613,587	-				-0.4
1,613,602	+				-1.0
1,613,605	+				-0.8
1,613,605	+				-1.2
1,613,612	+				+0.4
1,613,612	+				-0.3
1,613,613	-				+0.1
1,613,613	-				+0.8
1,613,646	+				-0.2
1,613,646	-				+0.8
1,613,651	+				+1.0
1,613,654	-				-0.2
1,613,659	-				-0.3
1,613,659	-				-0.3
1,613,668	+				+0.5
1,613,711	+		GFF1584	0.21	+0.7
1,613,756	-		GFF1584	0.38	-0.2
1,613,775	-		GFF1584	0.45	-0.2
1,613,813	+		GFF1584	0.60	-0.1
1,613,847	+		GFF1584	0.72	-1.0
1,613,883	+		GFF1584	0.86	+0.2
1,613,891	-		GFF1584	0.89	-1.0
1,613,898	+				-0.3
1,613,906	-				-0.4
1,613,906	-				-1.5
1,613,906	-				-1.2
1,613,911	-				+0.4
1,613,915	+				+0.9
1,613,915	+				-2.8
1,613,923	-				-1.1
1,613,923	-				-0.7
1,613,939	+				-0.2
1,613,939	+				-1.8
1,613,944	+				-1.4
1,613,947	-				-2.3
1,613,952	-				+0.3
1,613,982	-				+0.9
1,613,984	+				-0.3
1,613,987	-				-0.5
1,613,989	+				+0.4
1,613,989	+				+0.9
1,613,998	+				+0.2
1,614,019	-				-1.4
1,614,026	+				-0.1
1,614,034	+				-1.3
1,614,034	+				-0.2
1,614,034	+				-0.5
1,614,034	+				+0.1
1,614,034	+				-1.8
1,614,034	+				-0.3
1,614,034	+				-1.8
1,614,034	+				-0.3
1,614,034	+				-1.6
1,614,042	-				-2.1
1,614,042	-				-1.2
1,614,042	-				-1.6
1,614,042	-				-2.4
1,614,042	-				-0.8
1,614,042	-				+1.5
1,614,042	-				-0.6
1,614,042	-				+0.5
1,614,042	-				+0.6
1,614,042	-				-2.0
1,614,051	+				+0.0
1,614,051	+				+0.4
1,614,051	+				-0.3
1,614,051	+				+0.1
1,614,056	+				-0.6
1,614,056	+				-0.2
1,614,059	-				-0.7
1,614,064	-				+0.0
1,614,079	+				-2.0
1,614,079	+				+0.6
1,614,079	+				-1.1
1,614,079	+				+0.7
1,614,079	+				-1.3
1,614,087	-				+0.5
1,614,087	-				+0.8
1,614,087	-				+0.3
1,614,087	-				-0.4
1,614,088	-				-0.2
1,614,123	+		GFF1585	0.13	-0.4
1,614,125	+		GFF1585	0.13	-0.5
1,614,127	+		GFF1585	0.13	+0.5
1,614,127	+		GFF1585	0.13	-0.9
1,614,127	+		GFF1585	0.13	+0.9
1,614,127	+		GFF1585	0.13	-2.1
1,614,128	+		GFF1585	0.13	-1.0
1,614,135	-		GFF1585	0.14	-0.4
1,614,135	-		GFF1585	0.14	-0.5
1,614,135	-		GFF1585	0.14	+0.4
1,614,135	-		GFF1585	0.14	-2.6
1,614,137	+		GFF1585	0.14	-1.0
1,614,140	-		GFF1585	0.14	-2.8
1,614,140	-		GFF1585	0.14	-0.1
1,614,140	-		GFF1585	0.14	-0.6
1,614,159	+		GFF1585	0.16	-0.7
1,614,167	-		GFF1585	0.17	-0.4
1,614,169	+		GFF1585	0.17	+0.7
1,614,187	+		GFF1585	0.18	+0.1
1,614,187	+		GFF1585	0.18	-0.5
1,614,187	+		GFF1585	0.18	+0.8
1,614,187	+		GFF1585	0.18	-0.6
1,614,187	+		GFF1585	0.18	+0.4
1,614,187	+		GFF1585	0.18	-1.3
1,614,187	+		GFF1585	0.18	-0.8
1,614,187	+		GFF1585	0.18	+0.6
1,614,187	+		GFF1585	0.18	-0.0
1,614,187	+		GFF1585	0.18	-0.6
1,614,187	+		GFF1585	0.18	-0.4
1,614,187	+		GFF1585	0.18	+1.7
1,614,187	+		GFF1585	0.18	-1.1
1,614,195	-		GFF1585	0.19	-0.4
1,614,195	-		GFF1585	0.19	-0.5
1,614,195	-		GFF1585	0.19	-1.8
1,614,195	-		GFF1585	0.19	-0.3
1,614,195	-		GFF1585	0.19	-1.5
1,614,195	-		GFF1585	0.19	-0.7
1,614,195	-		GFF1585	0.19	+0.1
1,614,195	-		GFF1585	0.19	+1.4
1,614,195	-		GFF1585	0.19	+0.3
1,614,195	-		GFF1585	0.19	-0.6
1,614,195	-		GFF1585	0.19	+0.1
1,614,197	+		GFF1585	0.19	+0.2
1,614,227	-		GFF1585	0.22	-0.8
1,614,241	-		GFF1585	0.23	-0.4
1,614,241	-		GFF1585	0.23	-0.6
1,614,291	-		GFF1585	0.28	-0.3
1,614,298	-		GFF1585	0.28	+0.1
1,614,309	-		GFF1585	0.29	-1.2
1,614,324	+		GFF1585	0.30	+0.2
1,614,327	-		GFF1585	0.31	+0.5
1,614,342	+		GFF1585	0.32	+0.2
1,614,351	-		GFF1585	0.33	-1.0
1,614,357	+		GFF1585	0.33	-1.4
1,614,357	+		GFF1585	0.33	+0.5
1,614,357	+		GFF1585	0.33	+0.0
1,614,357	+		GFF1585	0.33	-0.1
1,614,357	+		GFF1585	0.33	-1.0
1,614,357	+		GFF1585	0.33	+0.7
1,614,357	+		GFF1585	0.33	+0.0
1,614,357	+		GFF1585	0.33	-0.2
1,614,357	+		GFF1585	0.33	-1.8
1,614,357	+		GFF1585	0.33	-0.1
1,614,357	+		GFF1585	0.33	+0.7
1,614,357	+		GFF1585	0.33	-0.6
1,614,357	+		GFF1585	0.33	-0.9
1,614,357	+		GFF1585	0.33	-1.6
1,614,357	+		GFF1585	0.33	-0.5
1,614,357	+		GFF1585	0.33	+0.0
1,614,357	+		GFF1585	0.33	-0.0
1,614,357	+		GFF1585	0.33	+2.0
1,614,357	+		GFF1585	0.33	-1.7
1,614,357	+		GFF1585	0.33	-1.6
1,614,357	+		GFF1585	0.33	-0.8
1,614,357	+		GFF1585	0.33	-0.0
1,614,357	+		GFF1585	0.33	-0.5
1,614,357	+		GFF1585	0.33	+0.4
1,614,365	-		GFF1585	0.34	-0.3
1,614,365	-		GFF1585	0.34	-0.5
1,614,365	-		GFF1585	0.34	+0.0
1,614,365	-		GFF1585	0.34	-0.5
1,614,365	-		GFF1585	0.34	+0.6
1,614,365	-		GFF1585	0.34	-2.7
1,614,365	-		GFF1585	0.34	+0.1
1,614,365	-		GFF1585	0.34	+0.8
1,614,365	-		GFF1585	0.34	-0.4
1,614,365	-		GFF1585	0.34	+1.5
1,614,365	-		GFF1585	0.34	+0.2
1,614,365	-		GFF1585	0.34	-0.4
1,614,365	-		GFF1585	0.34	+0.4
1,614,365	-		GFF1585	0.34	-1.6
1,614,365	-		GFF1585	0.34	-1.8
1,614,365	-		GFF1585	0.34	-1.1
1,614,365	-		GFF1585	0.34	+1.1
1,614,365	-		GFF1585	0.34	-0.2
1,614,365	-		GFF1585	0.34	-0.2
1,614,365	-		GFF1585	0.34	-0.2
1,614,365	-		GFF1585	0.34	+0.4
1,614,365	-		GFF1585	0.34	-0.6
1,614,365	-		GFF1585	0.34	-0.1
1,614,367	+		GFF1585	0.34	-0.4
1,614,403	+		GFF1585	0.37	-1.6
1,614,403	+		GFF1585	0.37	+0.2
1,614,403	+		GFF1585	0.37	-1.3
1,614,403	+		GFF1585	0.37	-0.8
1,614,403	+		GFF1585	0.37	+0.4
1,614,411	-		GFF1585	0.38	-1.2
1,614,411	-		GFF1585	0.38	-0.5
1,614,411	-		GFF1585	0.38	-1.7
1,614,411	-		GFF1585	0.38	-1.3
1,614,411	-		GFF1585	0.38	-2.0
1,614,437	+		GFF1585	0.40	+0.4
1,614,445	-		GFF1585	0.41	-1.1
1,614,445	-		GFF1585	0.41	+0.2
1,614,446	+		GFF1585	0.41	-0.5
1,614,446	+		GFF1585	0.41	+0.3
1,614,446	+		GFF1585	0.41	-0.1
1,614,447	+		GFF1585	0.41	-1.6
1,614,451	+		GFF1585	0.42	-2.0
1,614,455	-		GFF1585	0.42	-0.0
1,614,455	-		GFF1585	0.42	-1.5
1,614,455	-		GFF1585	0.42	-1.2
1,614,466	+		GFF1585	0.43	-1.1
1,614,523	-		GFF1585	0.48	+0.9
1,614,523	-		GFF1585	0.48	-1.0
1,614,528	-		GFF1585	0.48	-0.4
1,614,569	+		GFF1585	0.52	-0.4
1,614,577	-		GFF1585	0.53	-0.7
1,614,671	-		GFF1585	0.61	-0.4
1,614,674	+		GFF1585	0.61	-1.6
1,614,682	-		GFF1585	0.62	+0.8
1,614,690	+		GFF1585	0.63	-1.5
1,614,690	+		GFF1585	0.63	-0.2
1,614,690	+		GFF1585	0.63	+0.1
1,614,690	+		GFF1585	0.63	-0.4
1,614,690	+		GFF1585	0.63	-0.2
1,614,695	+		GFF1585	0.63	+0.7
1,614,695	+		GFF1585	0.63	-1.2
1,614,695	+		GFF1585	0.63	-0.2
1,614,695	+		GFF1585	0.63	+0.4
1,614,695	+		GFF1585	0.63	-0.9
1,614,698	-		GFF1585	0.63	+1.4
1,614,698	-		GFF1585	0.63	-2.4
1,614,698	-		GFF1585	0.63	-1.3
1,614,703	-		GFF1585	0.64	-0.3
1,614,703	-		GFF1585	0.64	+0.5
1,614,708	-		GFF1585	0.64	+1.2
1,614,718	-		GFF1585	0.65	-2.0
1,614,721	+		GFF1585	0.65	-0.3
1,614,749	+		GFF1585	0.68	-1.0
1,614,749	+		GFF1585	0.68	-2.6
1,614,762	+		GFF1585	0.69	-0.5
1,614,762	+		GFF1585	0.69	+0.4
1,614,770	-		GFF1585	0.70	+0.2
1,614,775	-		GFF1585	0.70	-1.9
1,614,775	-		GFF1585	0.70	-1.2
1,614,775	-		GFF1585	0.70	-1.0
1,614,776	+		GFF1585	0.70	-0.9
1,614,784	-		GFF1585	0.71	+0.1
1,614,785	-		GFF1585	0.71	-2.0
1,614,794	-		GFF1585	0.72	-0.3
1,614,797	+		GFF1585	0.72	-0.5
1,614,805	-		GFF1585	0.73	-1.5
1,614,805	-		GFF1585	0.73	-0.7
1,614,805	-		GFF1585	0.73	+0.8
1,614,809	+		GFF1585	0.73	+0.0
1,614,809	+		GFF1585	0.73	-0.7
1,614,817	-		GFF1585	0.74	-0.5
1,614,841	+		GFF1585	0.76	-1.1
1,614,868	+		GFF1585	0.78	-2.3
1,614,876	-		GFF1585	0.79	+0.3
1,614,896	+		GFF1585	0.81	-1.8
1,614,896	+		GFF1585	0.81	+0.0