Strain Fitness in Sphingobium sp. HT1-2 around GFF1582

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,611,354	+				+0.3
1,611,354	+				+1.3
1,611,359	+				-0.9
1,611,391	+				-0.1
1,611,396	-				+0.2
1,611,396	-				-1.1
1,611,418	+				-0.2
1,611,432	-				+1.6
1,611,432	-				-0.1
1,611,440	-		GFF1581	0.10	-0.5
1,611,461	-		GFF1581	0.12	-0.1
1,611,485	-		GFF1581	0.15	+0.2
1,611,494	+		GFF1581	0.15	-1.6
1,611,523	+		GFF1581	0.18	-2.0
1,611,531	-		GFF1581	0.19	+0.7
1,611,531	-		GFF1581	0.19	+0.8
1,611,552	-		GFF1581	0.21	-0.5
1,611,571	+		GFF1581	0.23	-1.2
1,611,579	-		GFF1581	0.24	-0.9
1,611,645	-		GFF1581	0.31	-0.3
1,611,647	+		GFF1581	0.31	+0.1
1,611,758	+		GFF1581	0.42	-1.6
1,611,758	+		GFF1581	0.42	-0.5
1,611,767	-		GFF1581	0.43	+0.8
1,611,775	+		GFF1581	0.44	+0.6
1,611,783	-		GFF1581	0.44	+0.7
1,611,793	+		GFF1581	0.45	-0.0
1,611,793	+		GFF1581	0.45	-0.1
1,611,793	+		GFF1581	0.45	-1.3
1,611,793	+		GFF1581	0.45	+0.2
1,611,793	+		GFF1581	0.45	-1.3
1,611,795	-		GFF1581	0.46	-0.8
1,611,801	-		GFF1581	0.46	+0.7
1,611,801	-		GFF1581	0.46	+0.4
1,611,801	-		GFF1581	0.46	-1.1
1,611,801	-		GFF1581	0.46	-1.2
1,611,801	-		GFF1581	0.46	-1.1
1,611,824	+		GFF1581	0.48	-0.5
1,611,824	+		GFF1581	0.48	-0.9
1,611,826	+		GFF1581	0.49	+0.2
1,611,833	+		GFF1581	0.49	-0.4
1,611,853	-		GFF1581	0.51	+1.0
1,611,873	+		GFF1581	0.53	-0.9
1,611,893	+		GFF1581	0.55	+0.1
1,611,901	-		GFF1581	0.56	-2.5
1,611,901	-		GFF1581	0.56	-1.6
1,611,901	-		GFF1581	0.56	-0.3
1,611,907	+		GFF1581	0.57	+1.1
1,611,915	-		GFF1581	0.57	+0.9
1,611,917	+		GFF1581	0.58	-0.5
1,611,917	+		GFF1581	0.58	+0.5
1,611,925	-		GFF1581	0.58	-1.8
1,611,925	-		GFF1581	0.58	+0.2
1,611,925	-		GFF1581	0.58	-1.1
1,611,925	-		GFF1581	0.58	+1.0
1,611,934	+		GFF1581	0.59	+0.1
1,611,934	+		GFF1581	0.59	+1.0
1,611,934	+		GFF1581	0.59	-1.4
1,611,934	+		GFF1581	0.59	-1.5
1,611,944	+		GFF1581	0.60	+0.4
1,611,950	+		GFF1581	0.61	+1.5
1,611,958	-		GFF1581	0.62	-0.2
1,611,967	-		GFF1581	0.63	-0.7
1,611,997	+		GFF1581	0.66	+0.1
1,611,997	+		GFF1581	0.66	-0.8
1,612,005	-		GFF1581	0.66	-1.9
1,612,010	+		GFF1581	0.67	-1.1
1,612,012	+		GFF1581	0.67	+1.8
1,612,015	+		GFF1581	0.67	-0.9
1,612,020	-		GFF1581	0.68	+0.2
1,612,020	-		GFF1581	0.68	-0.8
1,612,020	-		GFF1581	0.68	-1.7
1,612,039	+		GFF1581	0.70	-0.4
1,612,102	-		GFF1581	0.76	+0.3
1,612,102	-		GFF1581	0.76	-2.8
1,612,123	-		GFF1581	0.78	-0.3
1,612,134	+		GFF1581	0.79	-0.3
1,612,142	-		GFF1581	0.80	-1.5
1,612,142	-		GFF1581	0.80	+0.3
1,612,275	-				+0.7
1,612,311	-				+0.9
1,612,311	-				+0.2
1,612,326	+				+0.7
1,612,334	-				+0.8
1,612,354	+				-0.3
1,612,362	-				-0.3
1,612,417	+		GFF1582	0.14	-0.8
1,612,417	+		GFF1582	0.14	-0.9
1,612,419	+		GFF1582	0.14	-0.2
1,612,425	-		GFF1582	0.16	-2.4
1,612,425	-		GFF1582	0.16	-0.4
1,612,437	+		GFF1582	0.18	-2.0
1,612,437	+		GFF1582	0.18	+1.1
1,612,487	+		GFF1582	0.29	-0.1
1,612,511	+		GFF1582	0.34	+0.2
1,612,511	+		GFF1582	0.34	-0.3
1,612,511	+		GFF1582	0.34	+0.3
1,612,516	+		GFF1582	0.35	-1.3
1,612,516	+		GFF1582	0.35	-2.7
1,612,516	+		GFF1582	0.35	-0.8
1,612,516	+		GFF1582	0.35	-1.6
1,612,516	+		GFF1582	0.35	+1.2
1,612,519	-		GFF1582	0.35	-0.2
1,612,519	-		GFF1582	0.35	-1.1
1,612,519	-		GFF1582	0.35	-1.8
1,612,521	+		GFF1582	0.36	-1.7
1,612,521	+		GFF1582	0.36	+0.6
1,612,521	+		GFF1582	0.36	-1.6
1,612,524	-		GFF1582	0.36	-0.6
1,612,524	-		GFF1582	0.36	-0.3
1,612,524	-		GFF1582	0.36	-0.4
1,612,524	-		GFF1582	0.36	-1.8
1,612,529	-		GFF1582	0.37	-0.0
1,612,529	-		GFF1582	0.37	-0.5
1,612,529	-		GFF1582	0.37	-2.1
1,612,538	+		GFF1582	0.39	-0.3
1,612,543	+		GFF1582	0.40	+1.3
1,612,546	-		GFF1582	0.41	-1.3
1,612,546	-		GFF1582	0.41	+0.5
1,612,560	+		GFF1582	0.44	+0.0
1,612,560	+		GFF1582	0.44	+0.6
1,612,560	+		GFF1582	0.44	+0.0
1,612,568	-		GFF1582	0.45	-0.3
1,612,568	-		GFF1582	0.45	-1.0
1,612,568	-		GFF1582	0.45	-0.5
1,612,585	-		GFF1582	0.49	-1.9
1,612,592	+		GFF1582	0.51	-1.5
1,612,607	+		GFF1582	0.54	-0.2
1,612,607	+		GFF1582	0.54	-0.5
1,612,607	+		GFF1582	0.54	-0.5
1,612,607	+		GFF1582	0.54	-1.3
1,612,615	-		GFF1582	0.55	+0.2
1,612,649	-		GFF1582	0.62	+0.1
1,612,659	+		GFF1582	0.65	-1.8
1,612,664	+		GFF1582	0.66	+1.0
1,612,667	-		GFF1582	0.66	+1.0
1,612,667	-		GFF1582	0.66	-0.5
1,612,667	-		GFF1582	0.66	+0.2
1,612,679	+		GFF1582	0.69	-1.8
1,612,701	+		GFF1582	0.73	-0.5
1,612,701	+		GFF1582	0.73	+0.1
1,612,707	-		GFF1582	0.75	-1.0
1,612,707	-		GFF1582	0.75	-0.5
1,612,747	+		GFF1582	0.83	+0.2
1,612,750	-		GFF1582	0.84	+0.1
1,612,784	-				+0.2
1,612,790	+				+0.2
1,612,797	+				+1.2
1,612,798	-				-0.1
1,612,800	-				+0.8
1,612,805	-				+0.8
1,612,823	+				+0.1
1,612,823	+				-1.0
1,612,828	+				-1.0
1,612,828	+				-0.8
1,612,836	-				-0.9
1,612,836	-				-0.9
1,612,842	+				-3.5
1,612,868	+				-1.5
1,612,872	+				-3.2
1,612,988	+		GFF1583	0.22	-1.3
1,613,091	+		GFF1583	0.37	-1.6
1,613,198	+		GFF1583	0.53	-1.3
1,613,198	+		GFF1583	0.53	-1.6
1,613,201	-		GFF1583	0.53	-1.5
1,613,282	-		GFF1583	0.65	-1.3
1,613,303	-		GFF1583	0.68	-2.2
1,613,308	-		GFF1583	0.69	-0.3
1,613,309	-		GFF1583	0.69	-1.9
1,613,375	-		GFF1583	0.78	-1.5
1,613,510	+				-1.2
1,613,518	-				-1.7
1,613,520	+				-0.8
1,613,520	+				-0.3
1,613,520	+				-0.0
1,613,520	+				-0.9
1,613,528	-				+0.1
1,613,528	-				+0.2
1,613,532	+				+0.3
1,613,572	+				+0.8
1,613,572	+				-1.2
1,613,573	-				+0.1
1,613,577	+				-0.8
1,613,580	-				+0.1
1,613,580	-				+0.2
1,613,585	-				-2.4
1,613,587	-				-0.4
1,613,602	+				-1.0
1,613,605	+				-0.8
1,613,605	+				-1.2
1,613,612	+				+0.4
1,613,612	+				-0.3
1,613,613	-				+0.1
1,613,613	-				+0.8
1,613,646	+				-0.2
1,613,646	-				+0.8
1,613,651	+				+1.0
1,613,654	-				-0.2
1,613,659	-				-0.3
1,613,659	-				-0.3
1,613,668	+				+0.5
1,613,711	+		GFF1584	0.21	+0.7
1,613,756	-		GFF1584	0.38	-0.2
1,613,775	-		GFF1584	0.45	-0.2
1,613,813	+		GFF1584	0.60	-0.1