Strain Fitness in Sphingobium sp. HT1-2 around GFF1555

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,586,136	+		GFF1553	0.60	-0.2
1,586,144	-		GFF1553	0.64	+1.5
1,586,144	-		GFF1553	0.64	+1.6
1,586,144	-		GFF1553	0.64	+0.3
1,586,192	+		GFF1553	0.89	-1.3
1,586,207	-				-0.1
1,586,225	+				+0.4
1,586,233	-				+0.4
1,586,235	-				+0.4
1,586,261	+				+0.7
1,586,269	-				-2.0
1,586,310	+				-0.2
1,586,318	+		GFF1554	0.11	-0.1
1,586,373	-		GFF1554	0.18	+0.3
1,586,379	+		GFF1554	0.19	+0.0
1,586,379	+		GFF1554	0.19	-1.7
1,586,379	+		GFF1554	0.19	+1.5
1,586,379	+		GFF1554	0.19	-0.8
1,586,381	+		GFF1554	0.20	+0.6
1,586,384	+		GFF1554	0.20	-0.4
1,586,387	-		GFF1554	0.20	-1.4
1,586,387	-		GFF1554	0.20	-1.0
1,586,435	-		GFF1554	0.27	-0.2
1,586,449	-		GFF1554	0.29	-1.6
1,586,456	-		GFF1554	0.30	+0.3
1,586,456	-		GFF1554	0.30	+1.2
1,586,456	-		GFF1554	0.30	+1.1
1,586,468	-		GFF1554	0.32	-0.3
1,586,479	-		GFF1554	0.33	+0.3
1,586,484	+		GFF1554	0.34	+0.4
1,586,512	+		GFF1554	0.38	+0.7
1,586,512	+		GFF1554	0.38	+0.3
1,586,512	+		GFF1554	0.38	+0.4
1,586,512	+		GFF1554	0.38	-0.6
1,586,512	+		GFF1554	0.38	-0.6
1,586,518	+		GFF1554	0.39	-1.2
1,586,520	-		GFF1554	0.39	+1.1
1,586,520	-		GFF1554	0.39	-1.6
1,586,520	-		GFF1554	0.39	-0.2
1,586,520	-		GFF1554	0.39	-0.9
1,586,545	+		GFF1554	0.42	-1.5
1,586,558	-		GFF1554	0.44	-1.0
1,586,567	+		GFF1554	0.45	-0.1
1,586,567	+		GFF1554	0.45	-0.5
1,586,573	-		GFF1554	0.46	-0.8
1,586,575	-		GFF1554	0.47	-1.7
1,586,575	-		GFF1554	0.47	+0.3
1,586,575	-		GFF1554	0.47	-1.1
1,586,578	-		GFF1554	0.47	+0.1
1,586,585	-		GFF1554	0.48	+0.6
1,586,604	-		GFF1554	0.51	-1.5
1,586,613	+		GFF1554	0.52	-0.4
1,586,613	+		GFF1554	0.52	-0.4
1,586,613	+		GFF1554	0.52	+0.4
1,586,621	-		GFF1554	0.53	-0.3
1,586,621	-		GFF1554	0.53	-1.5
1,586,623	+		GFF1554	0.53	+0.0
1,586,623	+		GFF1554	0.53	+1.4
1,586,636	-		GFF1554	0.55	-2.0
1,586,646	-		GFF1554	0.56	+0.1
1,586,656	-		GFF1554	0.58	+0.3
1,586,663	+		GFF1554	0.59	+0.8
1,586,673	+		GFF1554	0.60	-0.6
1,586,688	+		GFF1554	0.62	+0.0
1,586,688	+		GFF1554	0.62	-0.1
1,586,688	+		GFF1554	0.62	-0.7
1,586,688	+		GFF1554	0.62	+0.3
1,586,688	+		GFF1554	0.62	-1.3
1,586,688	+		GFF1554	0.62	+0.4
1,586,688	+		GFF1554	0.62	+0.3
1,586,696	-		GFF1554	0.63	+0.0
1,586,696	-		GFF1554	0.63	-0.1
1,586,696	-		GFF1554	0.63	-0.3
1,586,696	-		GFF1554	0.63	-1.1
1,586,704	-		GFF1554	0.65	-0.2
1,586,719	+		GFF1554	0.67	+0.4
1,586,726	+		GFF1554	0.68	+0.3
1,586,732	+		GFF1554	0.68	+0.9
1,586,758	-		GFF1554	0.72	-0.7
1,586,763	+		GFF1554	0.73	-1.3
1,586,763	+		GFF1554	0.73	-1.3
1,586,763	+		GFF1554	0.73	+0.7
1,586,763	+		GFF1554	0.73	+0.2
1,586,763	+		GFF1554	0.73	-0.2
1,586,768	-		GFF1554	0.74	-0.5
1,586,770	+		GFF1554	0.74	+0.4
1,586,770	+		GFF1554	0.74	+0.1
1,586,770	+		GFF1554	0.74	-2.0
1,586,771	-		GFF1554	0.74	+0.8
1,586,771	-		GFF1554	0.74	+1.0
1,586,771	-		GFF1554	0.74	-0.2
1,586,771	-		GFF1554	0.74	+0.7
1,586,776	-		GFF1554	0.75	+0.1
1,586,778	-		GFF1554	0.75	-0.7
1,586,778	-		GFF1554	0.75	-0.3
1,586,778	-		GFF1554	0.75	-0.7
1,586,780	+		GFF1554	0.75	+0.4
1,586,784	+		GFF1554	0.76	-0.1
1,586,788	-		GFF1554	0.76	-0.4
1,586,789	+		GFF1554	0.76	+0.0
1,586,797	-		GFF1554	0.78	-0.6
1,586,835	+		GFF1554	0.83	-0.6
1,586,847	-		GFF1554	0.85	-0.8
1,586,867	+		GFF1554	0.87	+0.5
1,586,878	+		GFF1554	0.89	-0.1
1,586,880	-		GFF1554	0.89	-0.1
1,586,886	-				-1.4
1,586,886	-				+0.7
1,586,897	-				+0.7
1,586,969	-				+1.1
1,587,035	+				-1.0
1,587,046	+				-0.7
1,587,046	+				+1.2
1,587,047	+				-1.1
1,587,052	+				+0.6
1,587,053	-				+0.6
1,587,054	-				-2.2
1,587,057	+				+0.0
1,587,057	+				+1.0
1,587,057	+				-0.3
1,587,057	+				-0.5
1,587,060	-				-2.1
1,587,065	-				-0.1
1,587,074	+				+0.7
1,587,074	+				+1.1
1,587,082	-				+0.1
1,587,082	-				-1.2
1,587,082	-				+0.6
1,587,082	-				+1.4
1,587,092	-				-0.5
1,587,132	-				-0.3
1,587,132	-				+0.5
1,587,150	+				-0.6
1,587,151	+				-1.4
1,587,151	+				+0.3
1,587,151	+				-0.4
1,587,159	-				-1.3
1,587,159	-				-0.8
1,587,163	-				+0.4
1,587,166	+				-1.0
1,587,193	+		GFF1555	0.16	-1.4
1,587,199	+		GFF1555	0.18	+0.8
1,587,201	-		GFF1555	0.19	-1.2
1,587,203	+		GFF1555	0.19	-1.3
1,587,203	+		GFF1555	0.19	-1.7
1,587,203	+		GFF1555	0.19	-0.7
1,587,203	+		GFF1555	0.19	-0.8
1,587,203	+		GFF1555	0.19	+0.6
1,587,203	+		GFF1555	0.19	-0.0
1,587,203	+		GFF1555	0.19	+0.0
1,587,203	+		GFF1555	0.19	-0.2
1,587,203	+		GFF1555	0.19	-2.1
1,587,203	+		GFF1555	0.19	+0.3
1,587,203	+		GFF1555	0.19	+0.8
1,587,211	-		GFF1555	0.21	+0.3
1,587,211	-		GFF1555	0.21	+0.6
1,587,211	-		GFF1555	0.21	-0.3
1,587,211	-		GFF1555	0.21	+0.4
1,587,211	-		GFF1555	0.21	-2.1
1,587,211	-		GFF1555	0.21	-2.0
1,587,211	-		GFF1555	0.21	-0.7
1,587,211	-		GFF1555	0.21	+0.6
1,587,211	-		GFF1555	0.21	-0.9
1,587,217	-		GFF1555	0.23	+0.0
1,587,221	+		GFF1555	0.24	-0.1
1,587,221	+		GFF1555	0.24	-0.7
1,587,236	-		GFF1555	0.29	-1.0
1,587,247	-		GFF1555	0.32	-0.7
1,587,249	+		GFF1555	0.32	-0.1
1,587,249	+		GFF1555	0.32	+0.1
1,587,250	-		GFF1555	0.32	+1.3
1,587,257	-		GFF1555	0.34	+0.7
1,587,257	-		GFF1555	0.34	-1.3
1,587,259	+		GFF1555	0.35	-1.3
1,587,262	-		GFF1555	0.36	-0.9
1,587,265	-		GFF1555	0.37	+0.5
1,587,265	-		GFF1555	0.37	-0.2
1,587,272	+		GFF1555	0.39	-0.2
1,587,272	+		GFF1555	0.39	-1.7
1,587,275	-		GFF1555	0.40	+0.8
1,587,275	-		GFF1555	0.40	-0.4
1,587,292	-		GFF1555	0.44	+0.3
1,587,304	+		GFF1555	0.48	-0.4
1,587,312	-		GFF1555	0.50	-1.0
1,587,312	-		GFF1555	0.50	-0.9
1,587,313	-		GFF1555	0.50	+0.4
1,587,319	-		GFF1555	0.52	-1.8
1,587,378	-		GFF1555	0.69	+1.0
1,587,378	-		GFF1555	0.69	-0.2
1,587,378	-		GFF1555	0.69	-2.6
1,587,406	+		GFF1555	0.77	+0.1
1,587,411	+		GFF1555	0.78	+0.5
1,587,417	+		GFF1555	0.80	-0.1
1,587,419	+		GFF1555	0.80	-0.2
1,587,425	-		GFF1555	0.82	-0.7
1,587,429	+		GFF1555	0.83	+0.9
1,587,429	+		GFF1555	0.83	-0.2
1,587,432	-		GFF1555	0.84	-0.2
1,587,437	-		GFF1555	0.85	-1.9
1,587,438	+		GFF1555	0.86	-1.9
1,587,465	+				-0.8
1,587,473	-				-1.2
1,587,482	+				+1.6
1,587,586	-				+1.1
1,587,594	+				-2.1
1,587,594	+				-0.1
1,587,594	+				-0.3
1,587,594	+				+0.7
1,587,602	-				-0.1
1,587,602	-				+0.3
1,587,602	-				-1.4
1,587,602	-				+0.3
1,587,602	-				+0.2
1,587,602	-				-2.2
1,587,605	+				-1.3
1,587,605	+				-1.1
1,587,605	+				-2.4
1,587,605	+				+0.9
1,587,605	+				-1.2
1,587,605	+				-0.3
1,587,613	+				-0.9
1,587,613	-				-0.9
1,587,613	-				+0.6
1,587,613	-				+1.3
1,587,613	-				+0.9
1,587,613	-				-0.4
1,587,613	-				-0.5
1,587,637	-				-1.1
1,587,639	+				-1.4
1,587,658	-				-0.5
1,587,692	-				-0.0
1,587,701	+				-0.3
1,587,701	+				+0.4
1,587,701	+				-0.4
1,587,701	+				-0.6
1,587,709	-				+1.1
1,587,709	-				-1.1
1,587,709	-				-1.9
1,587,709	-				-0.3
1,587,711	+				-2.0
1,587,722	+				-0.6
1,587,738	-				+0.1
1,587,748	+				+0.1
1,587,748	+				+0.4
1,587,748	+				-1.8
1,587,748	+				+1.1
1,587,756	-				-0.6
1,587,756	-				-0.6
1,587,756	-				-2.6
1,587,762	-				-0.0
1,587,763	-				-0.7
1,587,772	+				-0.4
1,587,780	-				-0.5
1,587,780	-				-0.7
1,587,780	-				+1.1
1,587,780	-				-0.4
1,587,793	-		GFF1556	0.10	+0.2
1,587,802	+		GFF1556	0.11	+1.1
1,587,810	-		GFF1556	0.11	-1.4
1,587,825	+		GFF1556	0.13	-0.1
1,587,825	+		GFF1556	0.13	+0.3
1,587,825	+		GFF1556	0.13	-0.9
1,587,825	+		GFF1556	0.13	+0.6
1,587,825	+		GFF1556	0.13	-1.6
1,587,825	+		GFF1556	0.13	-0.7
1,587,825	+		GFF1556	0.13	-0.0
1,587,825	+		GFF1556	0.13	-2.4
1,587,825	+		GFF1556	0.13	-0.7
1,587,825	+		GFF1556	0.13	+0.1
1,587,830	+		GFF1556	0.13	-0.9
1,587,830	+		GFF1556	0.13	+0.4
1,587,830	+		GFF1556	0.13	-1.4
1,587,830	+		GFF1556	0.13	-0.9
1,587,830	+		GFF1556	0.13	+0.8
1,587,830	+		GFF1556	0.13	-0.0
1,587,830	+		GFF1556	0.13	+0.2
1,587,833	-		GFF1556	0.13	-0.9
1,587,833	-		GFF1556	0.13	-0.8
1,587,833	-		GFF1556	0.13	+0.4
1,587,833	-		GFF1556	0.13	+0.8
1,587,833	-		GFF1556	0.13	-2.3
1,587,833	-		GFF1556	0.13	-1.4
1,587,833	-		GFF1556	0.13	-1.0
1,587,833	-		GFF1556	0.13	-0.0
1,587,833	-		GFF1556	0.13	-1.4
1,587,833	-		GFF1556	0.13	+0.0
1,587,833	-		GFF1556	0.13	+0.4
1,587,833	-		GFF1556	0.13	-0.4
1,587,835	+		GFF1556	0.13	+0.4
1,587,835	+		GFF1556	0.13	-1.2
1,587,835	+		GFF1556	0.13	-0.3
1,587,835	+		GFF1556	0.13	-0.6
1,587,838	-		GFF1556	0.13	-0.6
1,587,838	-		GFF1556	0.13	-0.4
1,587,838	-		GFF1556	0.13	-1.0
1,587,838	-		GFF1556	0.13	+0.4
1,587,838	-		GFF1556	0.13	+0.1
1,587,838	-		GFF1556	0.13	-1.6
1,587,838	-		GFF1556	0.13	-0.9
1,587,838	-		GFF1556	0.13	-0.6
1,587,838	-		GFF1556	0.13	-0.2
1,587,843	+		GFF1556	0.14	+0.8
1,587,843	-		GFF1556	0.14	-0.1
1,587,848	-		GFF1556	0.14	-1.9
1,587,851	-		GFF1556	0.14	+0.2
1,587,883	-		GFF1556	0.17	-1.2
1,587,957	+		GFF1556	0.22	+0.3
1,587,976	-		GFF1556	0.23	-1.0
1,587,982	+		GFF1556	0.24	+0.3
1,587,988	-		GFF1556	0.24	-0.2
1,587,990	-		GFF1556	0.24	+0.3
1,588,004	+		GFF1556	0.25	+1.1
1,588,006	+		GFF1556	0.25	+0.6
1,588,021	+		GFF1556	0.26	-0.1
1,588,027	-		GFF1556	0.27	+0.3
1,588,047	-		GFF1556	0.28	-0.3
1,588,064	+		GFF1556	0.30	-0.7
1,588,103	+		GFF1556	0.32	-2.4
1,588,104	+		GFF1556	0.32	+0.9
1,588,104	+		GFF1556	0.32	-2.9
1,588,104	+		GFF1556	0.32	-1.4
1,588,105	+		GFF1556	0.32	-1.7
1,588,112	-		GFF1556	0.33	-2.4
1,588,112	-		GFF1556	0.33	+1.0
1,588,150	+		GFF1556	0.36	-1.1
1,588,153	-		GFF1556	0.36	+0.2
1,588,158	-		GFF1556	0.36	-0.2
1,588,158	-		GFF1556	0.36	-0.3
1,588,158	-		GFF1556	0.36	+0.0
1,588,171	+		GFF1556	0.37	-0.1
1,588,188	+		GFF1556	0.38	+0.1
1,588,188	+		GFF1556	0.38	+0.4
1,588,217	-		GFF1556	0.40	-0.2
1,588,218	+		GFF1556	0.41	+0.0
1,588,218	+		GFF1556	0.41	-0.2
1,588,226	-		GFF1556	0.41	-0.8
1,588,240	-		GFF1556	0.42	-0.2
1,588,261	+		GFF1556	0.44	-1.3
1,588,266	+		GFF1556	0.44	+2.4
1,588,314	+		GFF1556	0.47	+1.3
1,588,320	+		GFF1556	0.48	-1.0
1,588,342	-		GFF1556	0.49	-0.4
1,588,352	+		GFF1556	0.50	-2.3
1,588,356	+		GFF1556	0.50	+0.4
1,588,356	+		GFF1556	0.50	-2.3
1,588,357	-		GFF1556	0.50	-0.2
1,588,364	-		GFF1556	0.51	-0.4
1,588,364	-		GFF1556	0.51	-2.3
1,588,364	-		GFF1556	0.51	-1.8
1,588,391	+		GFF1556	0.53	-0.4
1,588,415	+		GFF1556	0.55	-0.5
1,588,415	+		GFF1556	0.55	-0.6
1,588,415	+		GFF1556	0.55	-0.2
1,588,415	+		GFF1556	0.55	+0.0
1,588,415	+		GFF1556	0.55	+1.0
1,588,415	+		GFF1556	0.55	-0.3
1,588,415	+		GFF1556	0.55	-0.6
1,588,415	+		GFF1556	0.55	+0.3
1,588,415	+		GFF1556	0.55	+0.1
1,588,420	+		GFF1556	0.55	+0.1
1,588,423	-		GFF1556	0.55	-1.1
1,588,423	-		GFF1556	0.55	-2.6
1,588,423	-		GFF1556	0.55	+1.3
1,588,423	-		GFF1556	0.55	-2.0
1,588,423	-		GFF1556	0.55	+0.6
1,588,428	-		GFF1556	0.55	-1.1
1,588,473	-		GFF1556	0.59	-3.1
1,588,473	-		GFF1556	0.59	-0.8
1,588,473	-		GFF1556	0.59	-2.0