Strain Fitness in Sphingobium sp. HT1-2 around GFF1540

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,571,556	-		GFF1538	0.63	-2.2
1,571,564	-		GFF1538	0.64	+0.4
1,571,598	+		GFF1538	0.69	-0.4
1,571,598	+		GFF1538	0.69	-0.7
1,571,598	+		GFF1538	0.69	-1.7
1,571,598	+		GFF1538	0.69	-0.3
1,571,598	+		GFF1538	0.69	-0.5
1,571,598	-		GFF1538	0.69	-0.7
1,571,603	-		GFF1538	0.70	+1.1
1,571,606	-		GFF1538	0.70	+0.1
1,571,606	-		GFF1538	0.70	-0.2
1,571,621	+		GFF1538	0.72	+0.4
1,571,640	-		GFF1538	0.75	-0.1
1,571,640	-		GFF1538	0.75	-0.5
1,571,647	-		GFF1538	0.76	-0.9
1,571,695	+		GFF1538	0.82	-0.1
1,571,703	+		GFF1538	0.83	+0.1
1,571,703	-		GFF1538	0.83	+0.9
1,571,715	-		GFF1538	0.85	-0.6
1,571,715	-		GFF1538	0.85	+0.3
1,571,717	+		GFF1538	0.85	-1.1
1,571,721	-		GFF1538	0.86	-0.6
1,571,722	-		GFF1538	0.86	+0.3
1,571,731	+		GFF1538	0.87	-1.0
1,571,744	-		GFF1538	0.89	-0.8
1,571,745	-		GFF1538	0.89	+0.2
1,571,773	+				-0.7
1,571,793	+				+0.6
1,571,797	-				+0.5
1,571,802	-				-1.7
1,571,804	-				-0.6
1,571,812	-				-0.5
1,571,812	-				+1.7
1,571,834	+				-1.5
1,571,834	+				-0.3
1,571,842	-				-0.8
1,571,877	+				-0.4
1,571,877	+				-0.2
1,571,877	+				+0.0
1,571,877	+				-0.4
1,571,877	+				+0.6
1,571,877	+				+0.8
1,571,877	+				-0.8
1,571,885	-				-1.5
1,571,885	-				-0.7
1,571,885	-				-0.3
1,571,885	-				-0.3
1,571,885	-				-2.6
1,571,885	-				-0.6
1,571,888	+				-2.5
1,571,896	-				+0.7
1,571,900	+				+1.8
1,571,908	+				+0.2
1,571,909	-				-0.3
1,571,909	-				+0.7
1,571,910	+				+0.4
1,571,918	-				+0.0
1,571,960	+				+1.0
1,571,960	+				+1.7
1,571,963	+				+0.1
1,571,968	-				+0.8
1,572,001	+		GFF1539	0.16	-0.7
1,572,046	+		GFF1539	0.26	-1.6
1,572,056	+		GFF1539	0.28	-0.7
1,572,056	+		GFF1539	0.28	+0.8
1,572,063	+		GFF1539	0.30	-0.8
1,572,063	+		GFF1539	0.30	-0.2
1,572,068	+		GFF1539	0.31	+1.5
1,572,068	+		GFF1539	0.31	-0.9
1,572,071	-		GFF1539	0.32	-0.7
1,572,073	+		GFF1539	0.32	-0.5
1,572,074	-		GFF1539	0.32	-0.4
1,572,074	-		GFF1539	0.32	-0.1
1,572,074	-		GFF1539	0.32	-0.2
1,572,076	-		GFF1539	0.33	-0.6
1,572,076	-		GFF1539	0.33	-1.8
1,572,076	-		GFF1539	0.33	-0.6
1,572,076	-		GFF1539	0.33	-1.2
1,572,076	-		GFF1539	0.33	-1.8
1,572,078	+		GFF1539	0.33	-0.3
1,572,086	-		GFF1539	0.35	-0.6
1,572,086	-		GFF1539	0.35	-1.1
1,572,087	+		GFF1539	0.35	-0.0
1,572,087	+		GFF1539	0.35	-0.6
1,572,095	-		GFF1539	0.37	+0.0
1,572,095	-		GFF1539	0.37	-1.1
1,572,106	-		GFF1539	0.40	-0.2
1,572,106	-		GFF1539	0.40	-0.8
1,572,117	-		GFF1539	0.42	-1.8
1,572,117	-		GFF1539	0.42	-0.6
1,572,134	-		GFF1539	0.46	-0.3
1,572,136	+		GFF1539	0.46	-1.5
1,572,144	-		GFF1539	0.48	-0.8
1,572,173	+		GFF1539	0.55	+0.0
1,572,173	+		GFF1539	0.55	+0.4
1,572,173	+		GFF1539	0.55	+0.3
1,572,178	+		GFF1539	0.56	+0.7
1,572,181	-		GFF1539	0.57	-1.0
1,572,191	-		GFF1539	0.59	+0.5
1,572,202	-		GFF1539	0.61	-0.2
1,572,205	+		GFF1539	0.62	+1.1
1,572,213	+		GFF1539	0.64	-0.6
1,572,218	-		GFF1539	0.65	+0.9
1,572,226	-		GFF1539	0.67	-0.3
1,572,253	+		GFF1539	0.73	+0.5
1,572,307	+		GFF1539	0.85	+0.2
1,572,307	+		GFF1539	0.85	-0.6
1,572,313	-		GFF1539	0.87	-0.8
1,572,315	-		GFF1539	0.87	-1.0
1,572,317	+		GFF1539	0.88	-1.1
1,572,320	-		GFF1539	0.88	-0.8
1,572,325	-		GFF1539	0.89	-0.4
1,572,325	-		GFF1539	0.89	+0.1
1,572,366	+				+0.4
1,572,366	+				-0.3
1,572,392	-				+0.1
1,572,392	-				+0.5
1,572,407	-				+0.1
1,572,420	+				-1.2
1,572,420	+				-1.2
1,572,425	+				-0.8
1,572,428	-				-1.8
1,572,429	+				+0.6
1,572,430	+				+1.2
1,572,433	-				-0.6
1,572,435	+				-0.2
1,572,437	-				-0.1
1,572,448	-				+0.4
1,572,448	-				-0.3
1,572,472	+				+0.2
1,572,482	+				-0.7
1,572,482	+				-0.9
1,572,482	+				-2.8
1,572,482	+				+0.8
1,572,482	+				-0.1
1,572,490	-				+0.7
1,572,490	-				-0.6
1,572,490	-				-0.6
1,572,517	+				+0.4
1,572,517	+				-0.3
1,572,517	+				-1.1
1,572,523	+				+0.1
1,572,544	-				-1.0
1,572,549	+				-1.2
1,572,549	+				-0.4
1,572,551	+				+0.2
1,572,573	+				+0.7
1,572,581	-				-1.0
1,572,596	-		GFF1540	0.13	-0.4
1,572,596	-		GFF1540	0.13	+0.3
1,572,630	+		GFF1540	0.21	+1.0
1,572,649	+		GFF1540	0.25	-0.3
1,572,649	+		GFF1540	0.25	+0.8
1,572,649	+		GFF1540	0.25	+0.0
1,572,657	-		GFF1540	0.27	-0.1
1,572,657	-		GFF1540	0.27	-0.8
1,572,657	-		GFF1540	0.27	-0.1
1,572,657	-		GFF1540	0.27	-0.9
1,572,659	+		GFF1540	0.28	-0.4
1,572,678	+		GFF1540	0.32	-1.3
1,572,696	+		GFF1540	0.37	-0.3
1,572,700	+		GFF1540	0.38	-0.6
1,572,700	+		GFF1540	0.38	-0.7
1,572,700	+		GFF1540	0.38	-1.3
1,572,703	-		GFF1540	0.38	+0.0
1,572,703	-		GFF1540	0.38	-0.2
1,572,708	-		GFF1540	0.40	+0.0
1,572,708	-		GFF1540	0.40	-1.2
1,572,708	-		GFF1540	0.40	-0.3
1,572,708	-		GFF1540	0.40	-0.6
1,572,708	-		GFF1540	0.40	-0.3
1,572,708	-		GFF1540	0.40	-1.2
1,572,711	+		GFF1540	0.40	-1.3
1,572,722	-		GFF1540	0.43	-0.6
1,572,815	+		GFF1540	0.65	+0.2
1,572,824	+		GFF1540	0.67	+0.3
1,572,835	+		GFF1540	0.70	-0.5
1,572,835	+		GFF1540	0.70	+0.8
1,572,840	+		GFF1540	0.71	-0.7
1,572,843	-		GFF1540	0.72	+0.4
1,572,848	-		GFF1540	0.73	-0.1
1,572,848	-		GFF1540	0.73	-0.6
1,572,911	+		GFF1540	0.88	-0.6
1,572,914	-		GFF1540	0.89	-0.4
1,572,947	+				-1.3
1,572,955	+				+0.6
1,572,958	-				+0.2
1,572,960	+				-1.2
1,572,965	+				+0.2
1,572,968	-				-0.7
1,572,968	-				+0.3
1,572,984	+				+0.3
1,572,992	-				+0.5
1,573,027	+				-1.7
1,573,027	+				-0.2
1,573,031	+				-1.1
1,573,033	-				-0.6
1,573,035	-				-2.2
1,573,035	-				+0.2
1,573,035	-				-0.3
1,573,035	-				-0.2
1,573,035	-				-2.7
1,573,035	-				-0.2
1,573,037	-				-1.3
1,573,037	-				-1.4
1,573,039	-				-0.8
1,573,059	+				-0.2
1,573,067	+		GFF1541	0.10	-0.8
1,573,069	-		GFF1541	0.10	+0.0
1,573,075	-		GFF1541	0.11	-1.0
1,573,075	-		GFF1541	0.11	-0.3
1,573,101	+		GFF1541	0.14	+0.7
1,573,101	+		GFF1541	0.14	+0.3
1,573,102	+		GFF1541	0.14	-1.8
1,573,106	+		GFF1541	0.14	+0.3
1,573,137	-		GFF1541	0.18	+0.9
1,573,172	+		GFF1541	0.22	+1.0
1,573,180	-		GFF1541	0.22	+0.0
1,573,194	-		GFF1541	0.24	-1.8
1,573,195	+		GFF1541	0.24	+0.2
1,573,196	+		GFF1541	0.24	+0.0
1,573,196	+		GFF1541	0.24	-1.6
1,573,203	+		GFF1541	0.25	-1.1
1,573,215	+		GFF1541	0.26	-0.6
1,573,221	+		GFF1541	0.27	+0.0
1,573,223	-		GFF1541	0.27	-0.6
1,573,237	+		GFF1541	0.29	-0.2
1,573,241	-		GFF1541	0.29	+0.2
1,573,243	+		GFF1541	0.29	+0.6
1,573,245	-		GFF1541	0.29	-1.3
1,573,251	-		GFF1541	0.30	-0.8
1,573,266	-		GFF1541	0.32	-0.3
1,573,310	+		GFF1541	0.36	-0.2
1,573,310	+		GFF1541	0.36	+1.1
1,573,310	+		GFF1541	0.36	-0.8
1,573,310	+		GFF1541	0.36	-0.2
1,573,310	+		GFF1541	0.36	-1.2
1,573,310	+		GFF1541	0.36	-1.9
1,573,310	+		GFF1541	0.36	-0.6
1,573,310	+		GFF1541	0.36	+0.0
1,573,310	+		GFF1541	0.36	+0.8
1,573,318	-		GFF1541	0.37	-0.5
1,573,318	-		GFF1541	0.37	-0.6
1,573,318	-		GFF1541	0.37	-0.4
1,573,326	+		GFF1541	0.38	-0.8
1,573,361	-		GFF1541	0.42	-0.3
1,573,365	+		GFF1541	0.42	-0.7
1,573,371	+		GFF1541	0.43	-0.2
1,573,373	-		GFF1541	0.43	-0.8
1,573,421	+		GFF1541	0.48	+0.0
1,573,468	+		GFF1541	0.54	-1.3
1,573,471	-		GFF1541	0.54	-1.1
1,573,472	+		GFF1541	0.54	+0.4
1,573,476	+		GFF1541	0.54	-0.2
1,573,491	+		GFF1541	0.56	-1.0
1,573,499	-		GFF1541	0.57	-2.0
1,573,500	+		GFF1541	0.57	-0.2
1,573,500	+		GFF1541	0.57	+0.0
1,573,500	+		GFF1541	0.57	-0.4
1,573,508	-		GFF1541	0.58	-0.8
1,573,508	-		GFF1541	0.58	-0.1
1,573,508	-		GFF1541	0.58	-0.3
1,573,508	-		GFF1541	0.58	-0.8
1,573,509	-		GFF1541	0.58	+0.3
1,573,529	+		GFF1541	0.60	+0.7
1,573,529	+		GFF1541	0.60	+1.3
1,573,529	+		GFF1541	0.60	+0.1
1,573,529	+		GFF1541	0.60	-2.1
1,573,537	-		GFF1541	0.61	+0.9
1,573,537	-		GFF1541	0.61	-1.6
1,573,537	-		GFF1541	0.61	-0.1
1,573,537	-		GFF1541	0.61	-2.1
1,573,537	-		GFF1541	0.61	-0.6
1,573,537	-		GFF1541	0.61	-0.5
1,573,537	-		GFF1541	0.61	+1.3
1,573,539	+		GFF1541	0.61	-0.3
1,573,572	-		GFF1541	0.65	+0.4
1,573,574	+		GFF1541	0.65	-0.3
1,573,602	-		GFF1541	0.68	-0.2
1,573,616	+		GFF1541	0.69	+0.4
1,573,616	+		GFF1541	0.69	-1.6
1,573,616	+		GFF1541	0.69	-0.5
1,573,624	-		GFF1541	0.70	+0.3
1,573,638	+		GFF1541	0.72	-2.5
1,573,641	+		GFF1541	0.72	+1.1
1,573,657	-		GFF1541	0.74	+0.7
1,573,662	-		GFF1541	0.74	-0.7
1,573,662	-		GFF1541	0.74	-1.2
1,573,668	-		GFF1541	0.75	-1.5
1,573,670	+		GFF1541	0.75	+0.2
1,573,683	+		GFF1541	0.77	-0.9
1,573,692	-		GFF1541	0.78	-0.6
1,573,708	-		GFF1541	0.79	+1.4
1,573,708	-		GFF1541	0.79	-0.3
1,573,720	+		GFF1541	0.81	-1.8
1,573,765	+		GFF1541	0.86	-0.0
1,573,771	+		GFF1541	0.86	+1.1
1,573,779	-		GFF1541	0.87	-0.0
1,573,779	-		GFF1541	0.87	+0.5
1,573,779	-		GFF1541	0.87	+0.8
1,573,779	-		GFF1541	0.87	+1.2
1,573,779	-		GFF1541	0.87	-1.4
1,573,798	+		GFF1541	0.89	+0.6
1,573,816	+				-0.2
1,573,830	+				+0.1
1,573,833	-				-0.1
1,573,835	-				+0.2
1,573,843	-				-1.5
1,573,898	+				-0.6
1,573,906	-				+0.0
1,573,911	-				+1.2
1,573,911	-				+0.5
1,573,931	+				-0.0