Strain Fitness in Sphingobium sp. HT1-2 around GFF154

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
147,528	+		GFF153	0.30	+0.7
147,530	+		GFF153	0.31	-1.4
147,531	-		GFF153	0.31	-2.7
147,538	-		GFF153	0.31	+0.7
147,554	+		GFF153	0.32	+0.2
147,554	+		GFF153	0.32	+0.2
147,595	-		GFF153	0.35	-0.8
147,598	+		GFF153	0.35	+1.6
147,605	+		GFF153	0.36	-1.7
147,613	+		GFF153	0.36	+0.8
147,613	+		GFF153	0.36	-1.1
147,613	+		GFF153	0.36	-1.7
147,621	-		GFF153	0.37	+1.6
147,621	-		GFF153	0.37	+1.5
147,621	-		GFF153	0.37	-1.0
147,654	-		GFF153	0.39	+1.2
147,656	+		GFF153	0.39	+0.1
147,668	+		GFF153	0.40	+0.2
147,679	+		GFF153	0.41	+0.6
147,679	+		GFF153	0.41	-1.2
147,679	+		GFF153	0.41	-1.6
147,707	+		GFF153	0.43	+0.2
147,719	-		GFF153	0.44	+0.6
147,728	+		GFF153	0.44	-1.5
147,729	-		GFF153	0.44	-1.0
147,733	+		GFF153	0.45	-1.1
147,775	+		GFF153	0.48	+0.0
147,775	+		GFF153	0.48	+0.5
147,775	+		GFF153	0.48	-1.5
147,775	+		GFF153	0.48	+0.9
147,775	+		GFF153	0.48	-1.4
147,780	+		GFF153	0.48	+0.8
147,783	-		GFF153	0.48	-0.0
147,788	-		GFF153	0.49	+0.8
147,788	-		GFF153	0.49	-0.8
147,791	+		GFF153	0.49	+0.7
147,793	-		GFF153	0.49	-0.9
147,824	+		GFF153	0.51	+0.4
147,824	+		GFF153	0.51	-0.3
147,824	+		GFF153	0.51	+1.1
147,824	+		GFF153	0.51	+0.7
147,824	+		GFF153	0.51	-0.5
147,824	+		GFF153	0.51	-2.1
147,832	-		GFF153	0.52	-1.8
147,832	-		GFF153	0.52	-1.4
147,832	-		GFF153	0.52	-2.4
147,832	-		GFF153	0.52	-0.1
147,832	-		GFF153	0.52	-0.5
147,889	-		GFF153	0.56	+1.6
147,908	+		GFF153	0.57	+1.1
147,916	-		GFF153	0.57	-1.1
147,935	+		GFF153	0.59	-2.0
147,949	+		GFF153	0.60	+0.7
147,949	+		GFF153	0.60	-0.5
147,949	+		GFF153	0.60	-0.3
147,965	+		GFF153	0.61	+0.3
147,973	-		GFF153	0.61	-0.3
148,024	+		GFF153	0.65	-0.8
148,024	+		GFF153	0.65	-0.0
148,028	+		GFF153	0.65	+0.7
148,028	+		GFF153	0.65	+1.0
148,028	+		GFF153	0.65	-0.3
148,028	+		GFF153	0.65	-1.0
148,032	+		GFF153	0.65	+1.5
148,034	+		GFF153	0.66	-0.3
148,036	-		GFF153	0.66	+0.7
148,036	-		GFF153	0.66	-1.3
148,036	-		GFF153	0.66	+0.7
148,036	-		GFF153	0.66	-0.5
148,036	-		GFF153	0.66	-0.3
148,041	-		GFF153	0.66	+0.0
148,042	-		GFF153	0.66	-1.4
148,059	-		GFF153	0.67	+0.2
148,083	-		GFF153	0.69	-1.2
148,113	-		GFF153	0.71	+0.7
148,126	-		GFF153	0.72	-0.3
148,157	-		GFF153	0.74	-1.2
148,162	+		GFF153	0.74	+0.2
148,165	-		GFF153	0.75	-1.3
148,170	-		GFF153	0.75	+0.1
148,170	-		GFF153	0.75	+0.1
148,175	+		GFF153	0.75	-1.2
148,177	+		GFF153	0.75	+0.5
148,204	+		GFF153	0.77	-0.4
148,204	+		GFF153	0.77	+0.8
148,204	+		GFF153	0.77	-0.5
148,204	+		GFF153	0.77	+0.3
148,204	+		GFF153	0.77	-1.5
148,204	+		GFF153	0.77	+0.3
148,204	+		GFF153	0.77	-2.2
148,204	+		GFF153	0.77	+0.7
148,212	-		GFF153	0.78	+0.3
148,212	-		GFF153	0.78	+0.2
148,212	-		GFF153	0.78	+0.7
148,212	-		GFF153	0.78	-0.5
148,212	-		GFF153	0.78	+0.9
148,212	-		GFF153	0.78	+0.0
148,212	-		GFF153	0.78	+0.1
148,212	-		GFF153	0.78	-0.0
148,217	-		GFF153	0.78	+0.8
148,218	+		GFF153	0.78	+0.4
148,248	+		GFF153	0.80	+0.5
148,326	-		GFF153	0.86	-0.4
148,367	+		GFF153	0.89	+0.1
148,367	+		GFF153	0.89	-0.0
148,369	-		GFF153	0.89	-2.4
148,369	-		GFF153	0.89	+0.9
148,384	+		GFF153	0.90	+0.6
148,384	+		GFF153	0.90	-0.3
148,384	+		GFF153	0.90	+0.3
148,392	-				+1.0
148,394	+				-0.2
148,399	+				-0.5
148,407	-				-0.4
148,412	+				+1.0
148,412	+				+0.2
148,415	+				+0.3
148,420	-				+0.2
148,420	-				-0.1
148,438	+				+0.2
148,448	-				+0.4
148,459	+				-0.9
148,460	-				-1.8
148,483	-				+0.3
148,515	+				-3.3
148,515	+				-1.3
148,515	+				+0.4
148,523	-				+0.3
148,523	-				-1.8
148,523	-				-0.5
148,523	-				+0.3
148,527	-				-0.6
148,565	+				-0.4
148,574	+				+0.0
148,574	+				+0.3
148,574	+				+0.8
148,574	+				+0.7
148,582	-				-2.1
148,582	-				+1.6
148,582	-				-0.1
148,582	-				-0.6
148,582	-				-0.0
148,582	-				-0.5
148,582	-				-1.7
148,582	-				+0.9
148,582	-				-0.7
148,583	+				+0.4
148,584	+				-0.0
148,593	-				-1.3
148,593	-				-1.6
148,593	-				+0.1
148,598	-				+0.2
148,660	+		GFF154	0.18	+0.5
148,670	+		GFF154	0.19	+1.3
148,670	+		GFF154	0.19	-1.7
148,670	+		GFF154	0.19	+0.3
148,670	+		GFF154	0.19	-1.0
148,670	+		GFF154	0.19	+0.6
148,670	+		GFF154	0.19	-2.6
148,670	+		GFF154	0.19	-2.1
148,670	+		GFF154	0.19	-0.3
148,670	+		GFF154	0.19	-1.1
148,670	+		GFF154	0.19	+0.5
148,670	+		GFF154	0.19	-1.4
148,670	+		GFF154	0.19	-1.7
148,678	-		GFF154	0.20	-1.4
148,678	-		GFF154	0.20	-2.5
148,678	-		GFF154	0.20	-1.3
148,678	-		GFF154	0.20	-0.3
148,678	-		GFF154	0.20	-0.7
148,678	-		GFF154	0.20	-0.4
148,678	-		GFF154	0.20	-1.3
148,678	-		GFF154	0.20	-1.4
148,678	-		GFF154	0.20	+0.5
148,678	-		GFF154	0.20	+1.9
148,678	-		GFF154	0.20	+1.0
148,686	-		GFF154	0.22	-0.1
148,692	+		GFF154	0.22	-1.4
148,693	+		GFF154	0.22	-0.6
148,693	+		GFF154	0.22	-0.4
148,718	+		GFF154	0.26	+0.4
148,722	-		GFF154	0.26	+0.1
148,722	-		GFF154	0.26	-1.9
148,751	+		GFF154	0.30	-1.6
148,751	+		GFF154	0.30	-0.1
148,751	+		GFF154	0.30	+0.1
148,751	+		GFF154	0.30	-1.1
148,759	-		GFF154	0.31	-0.3
148,759	-		GFF154	0.31	-1.0
148,759	-		GFF154	0.31	-2.3
148,770	-		GFF154	0.33	-2.3
148,770	-		GFF154	0.33	-0.7
148,785	+		GFF154	0.35	+0.3
148,790	+		GFF154	0.36	+0.4
148,795	+		GFF154	0.36	-0.1
148,795	-		GFF154	0.36	-0.7
148,797	+		GFF154	0.37	-1.0
148,803	-		GFF154	0.37	-0.6
148,803	-		GFF154	0.37	-0.8
148,803	-		GFF154	0.37	-0.0
148,803	-		GFF154	0.37	-0.0
148,805	+		GFF154	0.38	+0.3
148,813	-		GFF154	0.39	-0.6
148,813	-		GFF154	0.39	+0.7
148,824	+		GFF154	0.40	-1.2
148,835	-		GFF154	0.42	+0.1
148,859	+		GFF154	0.45	-0.8
148,863	+		GFF154	0.46	-0.3
148,878	+		GFF154	0.48	-0.4
148,878	+		GFF154	0.48	+0.6
148,878	+		GFF154	0.48	-1.1
148,886	-		GFF154	0.49	-0.9
148,911	-		GFF154	0.52	-1.1
148,927	-		GFF154	0.54	-1.1
148,938	-		GFF154	0.56	+0.3
149,012	-		GFF154	0.66	+0.2
149,037	-		GFF154	0.69	+0.2
149,037	-		GFF154	0.69	-1.4
149,037	-		GFF154	0.69	-0.8
149,037	-		GFF154	0.69	-3.0
149,049	+		GFF154	0.71	+0.6
149,056	+		GFF154	0.72	+1.3
149,059	+		GFF154	0.72	-0.2
149,061	-		GFF154	0.72	-2.2
149,079	+		GFF154	0.75	-2.4
149,094	+		GFF154	0.77	-1.0
149,102	-		GFF154	0.78	-1.0
149,113	+		GFF154	0.79	+0.8
149,113	+		GFF154	0.79	-2.2
149,121	-		GFF154	0.80	-0.3
149,121	-		GFF154	0.80	-0.9
149,145	-		GFF154	0.84	-0.5
149,177	+		GFF154	0.88	-1.0
149,177	+		GFF154	0.88	-1.6
149,177	+		GFF154	0.88	+1.4
149,177	+		GFF154	0.88	-0.3
149,177	+		GFF154	0.88	+0.5
149,177	+		GFF154	0.88	-0.4
149,177	+		GFF154	0.88	+0.5
149,182	+		GFF154	0.89	-0.4
149,185	-		GFF154	0.89	-0.6
149,185	-		GFF154	0.89	-0.2
149,185	-		GFF154	0.89	-1.7
149,185	-		GFF154	0.89	-0.4
149,185	-		GFF154	0.89	+0.7
149,185	-		GFF154	0.89	+0.5
149,185	-		GFF154	0.89	+0.7
149,185	-		GFF154	0.89	+0.5
149,185	-		GFF154	0.89	-0.5
149,185	-		GFF154	0.89	+0.4
149,185	-		GFF154	0.89	+0.3
149,192	+				-0.5
149,192	+				+0.0
149,192	+				-1.0
149,206	+				-1.5
149,206	+				+1.3
149,214	-				+0.4
149,214	-				-0.4
149,214	-				+0.7
149,216	+				-2.3
149,233	+				-1.2
149,241	-				-1.4
149,241	-				+0.7
149,241	-				-1.1
149,241	-				-0.9
149,243	+				+0.3
149,251	-				-0.4
149,254	+				+0.6
149,277	+				+0.7
149,360	+				-0.9
149,360	+				-0.5
149,360	+				+0.1
149,360	+				-1.9
149,365	+				+0.7
149,365	+				-0.5
149,365	+				-1.8
149,365	+				-0.6
149,365	+				-1.1
149,367	-				-0.6
149,369	-				+0.3
149,373	-				-0.5
149,373	-				+1.1
149,373	-				-0.3
149,373	-				-0.2
149,375	-				-0.9
149,409	+				-1.1
149,409	+				-1.5
149,441	+				+1.2
149,451	+				-1.2
149,451	+				-0.5
149,456	+				-0.5
149,457	+				-0.2
149,459	-				-1.7
149,503	+				-0.4
149,508	+				+1.1
149,508	+				+1.8
149,508	+				-0.2
149,511	-				+0.1
149,516	-				+0.3
149,516	-				+0.9
149,516	-				+0.5
149,516	-				-1.4
149,516	-				-1.8
149,516	-				-0.7
149,521	-				+0.8
149,531	+				+1.3
149,540	-				+0.4
149,545	-				-0.2
149,545	-				+0.8
149,550	+				-1.4
149,550	+				-2.1
149,558	-				-0.3
149,561	+				+0.4
149,561	+				-0.1
149,563	+				-1.3
149,567	+				+0.5
149,567	-				+0.1
149,598	+				-0.9
149,598	+				+0.9
149,603	+				-2.2
149,606	-				+1.1
149,606	-				+0.6
149,606	-				-0.6
149,611	-				-0.0
149,611	-				-0.3
149,611	-				-0.5
149,637	+				+0.2
149,647	+		GFF155	0.10	-0.2
149,652	-		GFF155	0.11	-0.3
149,686	-		GFF155	0.12	-1.0
149,686	-		GFF155	0.12	+0.4
149,688	-		GFF155	0.12	+1.6
149,708	+		GFF155	0.13	-0.2
149,725	-		GFF155	0.14	-0.2
149,730	+		GFF155	0.14	-0.5
149,732	+		GFF155	0.14	-0.9
149,732	+		GFF155	0.14	+0.2
149,732	+		GFF155	0.14	+0.8
149,738	-		GFF155	0.15	+0.6
149,740	-		GFF155	0.15	+1.5
149,740	-		GFF155	0.15	-2.1
149,753	+		GFF155	0.15	-0.9
149,753	+		GFF155	0.15	+0.1
149,761	+		GFF155	0.16	+0.3
149,806	+		GFF155	0.18	-2.1
149,813	+		GFF155	0.18	+0.3
149,821	-		GFF155	0.18	+0.1
149,822	+		GFF155	0.18	+0.3
149,822	+		GFF155	0.18	+0.4
149,884	-		GFF155	0.21	-0.2
149,885	+		GFF155	0.21	-2.5
149,893	-		GFF155	0.22	+1.4
149,912	-		GFF155	0.22	-1.6
149,917	-		GFF155	0.23	+0.4
149,930	-		GFF155	0.23	-0.4
149,947	+		GFF155	0.24	-2.8
149,965	-		GFF155	0.25	+0.2
149,965	-		GFF155	0.25	-0.3
149,986	+		GFF155	0.26	-0.2
150,012	-		GFF155	0.27	+0.5
150,053	+		GFF155	0.29	-0.2
150,053	+		GFF155	0.29	+0.3
150,053	+		GFF155	0.29	-0.1
150,053	+		GFF155	0.29	-0.5
150,076	-		GFF155	0.30	-0.4
150,079	+		GFF155	0.30	+0.0
150,079	+		GFF155	0.30	+0.9
150,087	-		GFF155	0.30	+0.3
150,089	+		GFF155	0.30	+0.0
150,089	+		GFF155	0.30	+0.1
150,097	-		GFF155	0.31	+0.6
150,148	+		GFF155	0.33	-1.5
150,148	+		GFF155	0.33	-1.8
150,148	+		GFF155	0.33	-2.4
150,148	+		GFF155	0.33	-0.7
150,148	+		GFF155	0.33	-0.2
150,153	+		GFF155	0.33	+0.6
150,153	+		GFF155	0.33	-1.0
150,156	-		GFF155	0.33	+0.3
150,156	-		GFF155	0.33	+0.7
150,156	-		GFF155	0.33	-0.1
150,156	-		GFF155	0.33	-0.6
150,156	-		GFF155	0.33	+0.7
150,156	-		GFF155	0.33	-1.0
150,156	-		GFF155	0.33	+1.2
150,156	-		GFF155	0.33	-0.5
150,156	-		GFF155	0.33	+0.4
150,156	-		GFF155	0.33	+0.4
150,161	-		GFF155	0.34	-0.8
150,171	+		GFF155	0.34	+0.0
150,171	+		GFF155	0.34	-0.4
150,176	+		GFF155	0.34	-2.4
150,197	-		GFF155	0.35	-0.1
150,206	+		GFF155	0.36	+0.1
150,243	+		GFF155	0.37	+0.6
150,243	+		GFF155	0.37	-1.7
150,245	+		GFF155	0.38	+1.0
150,245	+		GFF155	0.38	+0.1
150,251	-		GFF155	0.38	+0.1
150,251	-		GFF155	0.38	+0.5
150,253	-		GFF155	0.38	-0.4