Strain Fitness in Sphingobium sp. HT1-2 around GFF1538

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,570,104	-		GFF1537	0.52	-1.4
1,570,113	+		GFF1537	0.53	+0.7
1,570,232	-		GFF1537	0.63	+0.5
1,570,285	-		GFF1537	0.67	-0.6
1,570,285	-		GFF1537	0.67	+1.1
1,570,285	-		GFF1537	0.67	+1.1
1,570,302	+		GFF1537	0.68	+0.3
1,570,310	-		GFF1537	0.69	+0.4
1,570,329	+		GFF1537	0.70	-1.7
1,570,337	-		GFF1537	0.71	-0.6
1,570,345	+		GFF1537	0.72	+0.7
1,570,348	-		GFF1537	0.72	-1.5
1,570,360	+		GFF1537	0.73	+0.4
1,570,365	+		GFF1537	0.73	-1.0
1,570,370	+		GFF1537	0.74	-0.4
1,570,370	+		GFF1537	0.74	-0.8
1,570,370	+		GFF1537	0.74	+0.9
1,570,370	+		GFF1537	0.74	-1.5
1,570,370	+		GFF1537	0.74	+0.6
1,570,370	+		GFF1537	0.74	+0.2
1,570,378	-		GFF1537	0.74	+1.0
1,570,378	-		GFF1537	0.74	-1.6
1,570,400	-		GFF1537	0.76	-1.9
1,570,404	+		GFF1537	0.77	-0.6
1,570,409	+		GFF1537	0.77	+0.6
1,570,409	+		GFF1537	0.77	-0.7
1,570,416	-		GFF1537	0.78	-1.3
1,570,417	-		GFF1537	0.78	-0.8
1,570,429	+		GFF1537	0.79	-1.4
1,570,437	-		GFF1537	0.79	-0.6
1,570,460	+		GFF1537	0.81	-1.2
1,570,465	+		GFF1537	0.81	-3.3
1,570,465	+		GFF1537	0.81	-0.9
1,570,473	-		GFF1537	0.82	-1.0
1,570,483	+		GFF1537	0.83	-2.0
1,570,483	+		GFF1537	0.83	-0.0
1,570,483	+		GFF1537	0.83	-0.6
1,570,488	+		GFF1537	0.83	-1.8
1,570,491	-		GFF1537	0.84	+0.2
1,570,491	-		GFF1537	0.84	-2.3
1,570,491	-		GFF1537	0.84	+0.7
1,570,497	-		GFF1537	0.84	-0.9
1,570,535	+		GFF1537	0.87	+0.8
1,570,549	-		GFF1537	0.88	+0.0
1,570,581	-				-1.5
1,570,591	-				+0.5
1,570,592	-				-1.2
1,570,596	+				-1.7
1,570,596	+				+1.0
1,570,596	+				-0.1
1,570,596	+				+0.6
1,570,596	+				+0.3
1,570,596	+				-0.4
1,570,596	+				-0.6
1,570,596	+				-0.9
1,570,596	+				-0.1
1,570,596	+				-0.6
1,570,604	-				-1.4
1,570,604	-				-1.7
1,570,604	-				-0.3
1,570,604	-				-0.6
1,570,604	-				-0.6
1,570,604	-				-0.6
1,570,604	-				+0.4
1,570,604	-				-1.3
1,570,604	-				-0.3
1,570,604	-				-2.2
1,570,604	-				-0.2
1,570,604	-				+1.8
1,570,614	+				-0.2
1,570,627	-				-1.4
1,570,629	+				+0.4
1,570,629	+				-0.1
1,570,630	+				-1.1
1,570,679	+				-2.0
1,570,680	+				-0.5
1,570,685	+				-1.3
1,570,688	-				+0.6
1,570,693	-				-0.4
1,570,740	+				-1.2
1,570,778	-				-1.8
1,570,813	+				-1.5
1,570,813	+				+1.0
1,570,835	-				+0.1
1,570,851	-				+1.0
1,570,869	-				-1.6
1,570,892	-				+0.1
1,570,910	-				-0.1
1,570,912	-				-1.2
1,570,936	+				-0.8
1,570,941	+				+0.5
1,570,941	+				-0.7
1,570,941	+				+0.1
1,570,941	+				-0.9
1,570,941	+				+1.2
1,570,941	+				-0.8
1,570,941	+				-0.1
1,570,941	+				+0.5
1,570,949	-				-0.8
1,571,032	+				-0.8
1,571,072	-				-0.8
1,571,079	+				-0.2
1,571,087	-				+0.1
1,571,087	-				-0.5
1,571,087	-				-1.3
1,571,087	-				-0.8
1,571,089	+				-1.8
1,571,089	+				+1.6
1,571,089	+				+1.2
1,571,097	-				+0.7
1,571,109	-				+1.0
1,571,135	+				-0.8
1,571,140	+				+0.4
1,571,148	-				+0.2
1,571,179	-		GFF1538	0.12	-0.0
1,571,187	-		GFF1538	0.13	-0.8
1,571,195	+		GFF1538	0.14	+0.2
1,571,250	+		GFF1538	0.21	+0.5
1,571,250	-		GFF1538	0.21	-0.3
1,571,261	-		GFF1538	0.23	+0.2
1,571,278	-		GFF1538	0.25	+0.2
1,571,281	+		GFF1538	0.26	+0.4
1,571,281	+		GFF1538	0.26	-1.3
1,571,299	-		GFF1538	0.28	-0.8
1,571,302	-		GFF1538	0.29	-1.8
1,571,305	+		GFF1538	0.29	+0.1
1,571,313	-		GFF1538	0.30	+0.1
1,571,313	-		GFF1538	0.30	+0.7
1,571,333	-		GFF1538	0.33	-0.3
1,571,357	+		GFF1538	0.36	+2.2
1,571,365	-		GFF1538	0.37	-0.2
1,571,393	+		GFF1538	0.41	+0.0
1,571,401	+		GFF1538	0.42	+0.8
1,571,409	-		GFF1538	0.43	-2.3
1,571,414	+		GFF1538	0.44	+0.9
1,571,420	+		GFF1538	0.45	-0.8
1,571,421	+		GFF1538	0.45	+0.1
1,571,449	-		GFF1538	0.49	-0.7
1,571,455	+		GFF1538	0.49	-2.5
1,571,459	+		GFF1538	0.50	-0.2
1,571,459	+		GFF1538	0.50	-2.5
1,571,463	-		GFF1538	0.50	-0.1
1,571,473	-		GFF1538	0.52	+0.9
1,571,473	-		GFF1538	0.52	+0.3
1,571,483	-		GFF1538	0.53	-0.5
1,571,488	+		GFF1538	0.54	+0.7
1,571,498	-		GFF1538	0.55	+0.7
1,571,556	-		GFF1538	0.63	-2.2
1,571,564	-		GFF1538	0.64	+0.4
1,571,598	+		GFF1538	0.69	-0.4
1,571,598	+		GFF1538	0.69	-0.7
1,571,598	+		GFF1538	0.69	-1.7
1,571,598	+		GFF1538	0.69	-0.3
1,571,598	+		GFF1538	0.69	-0.5
1,571,598	-		GFF1538	0.69	-0.7
1,571,603	-		GFF1538	0.70	+1.1
1,571,606	-		GFF1538	0.70	+0.1
1,571,606	-		GFF1538	0.70	-0.2
1,571,621	+		GFF1538	0.72	+0.4
1,571,640	-		GFF1538	0.75	-0.1
1,571,640	-		GFF1538	0.75	-0.5
1,571,647	-		GFF1538	0.76	-0.9
1,571,695	+		GFF1538	0.82	-0.1
1,571,703	+		GFF1538	0.83	+0.1
1,571,703	-		GFF1538	0.83	+0.9
1,571,715	-		GFF1538	0.85	-0.6
1,571,715	-		GFF1538	0.85	+0.3
1,571,717	+		GFF1538	0.85	-1.1
1,571,721	-		GFF1538	0.86	-0.6
1,571,722	-		GFF1538	0.86	+0.3
1,571,731	+		GFF1538	0.87	-1.0
1,571,744	-		GFF1538	0.89	-0.8
1,571,745	-		GFF1538	0.89	+0.2
1,571,773	+				-0.7
1,571,793	+				+0.6
1,571,797	-				+0.5
1,571,802	-				-1.7
1,571,804	-				-0.6
1,571,812	-				-0.5
1,571,812	-				+1.7
1,571,834	+				-1.5
1,571,834	+				-0.3
1,571,842	-				-0.8
1,571,877	+				-0.4
1,571,877	+				-0.2
1,571,877	+				+0.0
1,571,877	+				-0.4
1,571,877	+				+0.6
1,571,877	+				+0.8
1,571,877	+				-0.8
1,571,885	-				-1.5
1,571,885	-				-0.7
1,571,885	-				-0.3
1,571,885	-				-0.3
1,571,885	-				-2.6
1,571,885	-				-0.6
1,571,888	+				-2.5
1,571,896	-				+0.7
1,571,900	+				+1.8
1,571,908	+				+0.2
1,571,909	-				-0.3
1,571,909	-				+0.7
1,571,910	+				+0.4
1,571,918	-				+0.0
1,571,960	+				+1.0
1,571,960	+				+1.7
1,571,963	+				+0.1
1,571,968	-				+0.8
1,572,001	+		GFF1539	0.16	-0.7
1,572,046	+		GFF1539	0.26	-1.6
1,572,056	+		GFF1539	0.28	-0.7
1,572,056	+		GFF1539	0.28	+0.8
1,572,063	+		GFF1539	0.30	-0.8
1,572,063	+		GFF1539	0.30	-0.2
1,572,068	+		GFF1539	0.31	+1.5
1,572,068	+		GFF1539	0.31	-0.9
1,572,071	-		GFF1539	0.32	-0.7
1,572,073	+		GFF1539	0.32	-0.5
1,572,074	-		GFF1539	0.32	-0.4
1,572,074	-		GFF1539	0.32	-0.1
1,572,074	-		GFF1539	0.32	-0.2
1,572,076	-		GFF1539	0.33	-0.6
1,572,076	-		GFF1539	0.33	-1.8
1,572,076	-		GFF1539	0.33	-0.6
1,572,076	-		GFF1539	0.33	-1.2
1,572,076	-		GFF1539	0.33	-1.8
1,572,078	+		GFF1539	0.33	-0.3
1,572,086	-		GFF1539	0.35	-0.6
1,572,086	-		GFF1539	0.35	-1.1
1,572,087	+		GFF1539	0.35	-0.0
1,572,087	+		GFF1539	0.35	-0.6
1,572,095	-		GFF1539	0.37	+0.0
1,572,095	-		GFF1539	0.37	-1.1
1,572,106	-		GFF1539	0.40	-0.2
1,572,106	-		GFF1539	0.40	-0.8
1,572,117	-		GFF1539	0.42	-1.8
1,572,117	-		GFF1539	0.42	-0.6
1,572,134	-		GFF1539	0.46	-0.3
1,572,136	+		GFF1539	0.46	-1.5
1,572,144	-		GFF1539	0.48	-0.8
1,572,173	+		GFF1539	0.55	+0.0
1,572,173	+		GFF1539	0.55	+0.4
1,572,173	+		GFF1539	0.55	+0.3
1,572,178	+		GFF1539	0.56	+0.7
1,572,181	-		GFF1539	0.57	-1.0
1,572,191	-		GFF1539	0.59	+0.5
1,572,202	-		GFF1539	0.61	-0.2
1,572,205	+		GFF1539	0.62	+1.1
1,572,213	+		GFF1539	0.64	-0.6
1,572,218	-		GFF1539	0.65	+0.9
1,572,226	-		GFF1539	0.67	-0.3
1,572,253	+		GFF1539	0.73	+0.5
1,572,307	+		GFF1539	0.85	+0.2
1,572,307	+		GFF1539	0.85	-0.6
1,572,313	-		GFF1539	0.87	-0.8
1,572,315	-		GFF1539	0.87	-1.0
1,572,317	+		GFF1539	0.88	-1.1
1,572,320	-		GFF1539	0.88	-0.8
1,572,325	-		GFF1539	0.89	-0.4
1,572,325	-		GFF1539	0.89	+0.1
1,572,366	+				+0.4
1,572,366	+				-0.3
1,572,392	-				+0.1
1,572,392	-				+0.5
1,572,407	-				+0.1
1,572,420	+				-1.2
1,572,420	+				-1.2
1,572,425	+				-0.8
1,572,428	-				-1.8
1,572,429	+				+0.6
1,572,430	+				+1.2
1,572,433	-				-0.6
1,572,435	+				-0.2
1,572,437	-				-0.1
1,572,448	-				+0.4
1,572,448	-				-0.3
1,572,472	+				+0.2
1,572,482	+				-0.7
1,572,482	+				-0.9
1,572,482	+				-2.8
1,572,482	+				+0.8
1,572,482	+				-0.1
1,572,490	-				+0.7
1,572,490	-				-0.6
1,572,490	-				-0.6
1,572,517	+				+0.4
1,572,517	+				-0.3
1,572,517	+				-1.1
1,572,523	+				+0.1
1,572,544	-				-1.0
1,572,549	+				-1.2
1,572,549	+				-0.4
1,572,551	+				+0.2
1,572,573	+				+0.7
1,572,581	-				-1.0
1,572,596	-		GFF1540	0.13	-0.4
1,572,596	-		GFF1540	0.13	+0.3
1,572,630	+		GFF1540	0.21	+1.0
1,572,649	+		GFF1540	0.25	-0.3
1,572,649	+		GFF1540	0.25	+0.8
1,572,649	+		GFF1540	0.25	+0.0
1,572,657	-		GFF1540	0.27	-0.1
1,572,657	-		GFF1540	0.27	-0.8
1,572,657	-		GFF1540	0.27	-0.1
1,572,657	-		GFF1540	0.27	-0.9
1,572,659	+		GFF1540	0.28	-0.4
1,572,678	+		GFF1540	0.32	-1.3
1,572,696	+		GFF1540	0.37	-0.3
1,572,700	+		GFF1540	0.38	-0.6
1,572,700	+		GFF1540	0.38	-0.7
1,572,700	+		GFF1540	0.38	-1.3
1,572,703	-		GFF1540	0.38	+0.0
1,572,703	-		GFF1540	0.38	-0.2
1,572,708	-		GFF1540	0.40	+0.0
1,572,708	-		GFF1540	0.40	-1.2
1,572,708	-		GFF1540	0.40	-0.3
1,572,708	-		GFF1540	0.40	-0.6
1,572,708	-		GFF1540	0.40	-0.3
1,572,708	-		GFF1540	0.40	-1.2
1,572,711	+		GFF1540	0.40	-1.3
1,572,722	-		GFF1540	0.43	-0.6
1,572,815	+		GFF1540	0.65	+0.2
1,572,824	+		GFF1540	0.67	+0.3