Strain Fitness in Sphingobium sp. HT1-2 around GFF1537

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,568,470	-		GFF1536	0.16	-2.0
1,568,489	+		GFF1536	0.18	-0.4
1,568,489	+		GFF1536	0.18	+0.4
1,568,491	-		GFF1536	0.18	+0.8
1,568,504	-		GFF1536	0.19	-0.9
1,568,514	-		GFF1536	0.20	+0.6
1,568,528	+		GFF1536	0.22	-2.0
1,568,534	-		GFF1536	0.22	-0.5
1,568,557	-		GFF1536	0.24	+1.7
1,568,562	+		GFF1536	0.25	+0.5
1,568,576	+		GFF1536	0.26	+1.3
1,568,592	+		GFF1536	0.28	+0.9
1,568,592	+		GFF1536	0.28	-1.3
1,568,600	-		GFF1536	0.29	+1.3
1,568,618	+		GFF1536	0.30	-0.2
1,568,626	-		GFF1536	0.31	-1.2
1,568,628	+		GFF1536	0.31	-0.9
1,568,631	-		GFF1536	0.32	+1.5
1,568,636	-		GFF1536	0.32	-1.6
1,568,636	-		GFF1536	0.32	-1.6
1,568,653	+		GFF1536	0.34	-2.1
1,568,658	-		GFF1536	0.34	+0.2
1,568,669	-		GFF1536	0.35	-0.7
1,568,669	-		GFF1536	0.35	-1.3
1,568,673	+		GFF1536	0.36	+0.3
1,568,690	+		GFF1536	0.37	-0.6
1,568,698	-		GFF1536	0.38	+1.4
1,568,706	+		GFF1536	0.39	+0.5
1,568,749	+		GFF1536	0.43	+1.1
1,568,749	+		GFF1536	0.43	-0.0
1,568,749	+		GFF1536	0.43	-0.6
1,568,749	+		GFF1536	0.43	-0.2
1,568,757	-		GFF1536	0.44	-0.1
1,568,764	+		GFF1536	0.44	+1.2
1,568,779	+		GFF1536	0.46	-1.7
1,568,779	+		GFF1536	0.46	+1.4
1,568,787	-		GFF1536	0.47	-2.0
1,568,787	-		GFF1536	0.47	-1.1
1,568,787	-		GFF1536	0.47	+0.3
1,568,789	+		GFF1536	0.47	-0.7
1,568,843	+		GFF1536	0.52	-0.4
1,568,849	+		GFF1536	0.53	-0.3
1,568,849	+		GFF1536	0.53	-1.3
1,568,852	-		GFF1536	0.53	-0.2
1,568,852	-		GFF1536	0.53	+1.0
1,568,857	-		GFF1536	0.53	-1.4
1,568,879	+		GFF1536	0.55	+1.0
1,568,903	-		GFF1536	0.58	+0.3
1,568,904	-		GFF1536	0.58	-1.0
1,568,922	-		GFF1536	0.60	+0.4
1,568,951	+		GFF1536	0.62	+0.4
1,568,979	-		GFF1536	0.65	+0.0
1,569,016	+		GFF1536	0.69	+0.1
1,569,034	-		GFF1536	0.70	-0.3
1,569,071	-		GFF1536	0.74	-0.7
1,569,082	+		GFF1536	0.75	-1.3
1,569,083	+		GFF1536	0.75	+0.0
1,569,083	+		GFF1536	0.75	-0.8
1,569,091	-		GFF1536	0.76	-1.2
1,569,113	+		GFF1536	0.78	+0.1
1,569,113	+		GFF1536	0.78	-0.4
1,569,113	+		GFF1536	0.78	-0.7
1,569,119	-		GFF1536	0.79	-1.9
1,569,124	+		GFF1536	0.79	-0.7
1,569,128	+		GFF1536	0.79	+0.8
1,569,128	+		GFF1536	0.79	-1.6
1,569,128	+		GFF1536	0.79	-0.1
1,569,136	-		GFF1536	0.80	-1.9
1,569,141	+		GFF1536	0.81	-1.1
1,569,142	-		GFF1536	0.81	-0.4
1,569,147	-		GFF1536	0.81	-1.5
1,569,159	-		GFF1536	0.82	-0.7
1,569,168	-		GFF1536	0.83	-1.2
1,569,172	+		GFF1536	0.84	-0.1
1,569,172	+		GFF1536	0.84	+0.2
1,569,172	+		GFF1536	0.84	-0.3
1,569,172	+		GFF1536	0.84	+0.3
1,569,177	+		GFF1536	0.84	-0.4
1,569,180	-		GFF1536	0.84	+0.6
1,569,180	-		GFF1536	0.84	-1.2
1,569,180	-		GFF1536	0.84	-0.5
1,569,180	-		GFF1536	0.84	+1.1
1,569,185	-		GFF1536	0.85	-0.1
1,569,198	+		GFF1536	0.86	-0.8
1,569,198	+		GFF1536	0.86	-0.4
1,569,208	+		GFF1536	0.87	+0.3
1,569,224	+		GFF1536	0.89	+0.7
1,569,224	+		GFF1536	0.89	+0.3
1,569,224	+		GFF1536	0.89	-1.0
1,569,232	-		GFF1536	0.89	-0.1
1,569,240	-				+0.9
1,569,264	+				-0.9
1,569,264	+				-0.7
1,569,264	+				+0.3
1,569,264	+				-0.3
1,569,264	+				-0.9
1,569,264	+				-0.4
1,569,264	+				-1.3
1,569,264	+				-0.5
1,569,264	+				+0.3
1,569,264	+				-0.4
1,569,264	+				-0.6
1,569,264	+				+0.2
1,569,264	+				-0.6
1,569,264	+				+0.1
1,569,264	+				-1.6
1,569,264	+				+1.6
1,569,264	+				-0.7
1,569,264	+				+0.1
1,569,264	+				-0.6
1,569,264	+				-0.1
1,569,264	+				+1.4
1,569,264	+				-1.6
1,569,272	-				+0.6
1,569,272	-				-0.1
1,569,272	-				+1.4
1,569,272	-				-1.0
1,569,272	-				+0.0
1,569,272	-				-2.4
1,569,272	-				-1.4
1,569,272	-				+0.2
1,569,272	-				+0.0
1,569,272	-				-1.2
1,569,272	-				+0.1
1,569,272	-				-2.3
1,569,272	-				+0.4
1,569,272	-				+1.0
1,569,272	-				-0.6
1,569,272	-				-0.7
1,569,272	-				-0.7
1,569,272	-				-0.6
1,569,272	-				+0.1
1,569,272	-				+0.7
1,569,272	-				+0.1
1,569,272	-				-1.7
1,569,272	-				+0.3
1,569,272	-				+1.9
1,569,272	-				-1.3
1,569,272	-				-1.0
1,569,278	+				+1.1
1,569,282	-				+0.3
1,569,318	-				-1.1
1,569,322	-				+0.3
1,569,324	+				-0.6
1,569,324	+				-0.0
1,569,330	+				+0.0
1,569,332	-				-0.3
1,569,332	-				+0.3
1,569,332	-				+0.2
1,569,335	+				-1.9
1,569,335	+				+0.1
1,569,335	+				+0.6
1,569,335	+				+0.3
1,569,335	+				-1.7
1,569,335	+				+0.3
1,569,338	-				-0.1
1,569,343	-				+0.1
1,569,343	-				-0.7
1,569,343	-				-1.2
1,569,343	-				-0.5
1,569,343	-				-0.2
1,569,343	-				-0.6
1,569,343	-				-0.4
1,569,343	-				+1.1
1,569,343	-				+0.9
1,569,377	+				+0.6
1,569,385	+				+0.1
1,569,388	+				-0.6
1,569,396	-				+0.5
1,569,401	+				+0.7
1,569,404	-				-0.6
1,569,404	-				-0.1
1,569,414	+				+0.9
1,569,414	-				+0.6
1,569,422	-				+0.2
1,569,439	-				-0.6
1,569,449	+				-0.4
1,569,449	-				+0.6
1,569,467	-				-0.4
1,569,469	+				-0.4
1,569,480	-				-0.3
1,569,496	-				+0.7
1,569,563	+				+0.4
1,569,572	+				-0.1
1,569,579	+				-2.6
1,569,579	+				-0.3
1,569,597	-		GFF1537	0.11	+0.2
1,569,640	+		GFF1537	0.14	-1.6
1,569,640	+		GFF1537	0.14	-2.0
1,569,645	+		GFF1537	0.15	+0.8
1,569,645	+		GFF1537	0.15	+0.3
1,569,648	-		GFF1537	0.15	+1.2
1,569,653	-		GFF1537	0.15	-0.9
1,569,667	+		GFF1537	0.16	+1.8
1,569,675	-		GFF1537	0.17	-1.3
1,569,707	+		GFF1537	0.20	+0.7
1,569,707	+		GFF1537	0.20	-0.7
1,569,707	+		GFF1537	0.20	+0.1
1,569,707	+		GFF1537	0.20	+1.5
1,569,707	+		GFF1537	0.20	+0.6
1,569,715	-		GFF1537	0.20	-0.6
1,569,715	-		GFF1537	0.20	-0.7
1,569,715	-		GFF1537	0.20	-0.3
1,569,715	-		GFF1537	0.20	-1.2
1,569,715	-		GFF1537	0.20	-1.7
1,569,715	-		GFF1537	0.20	+0.1
1,569,715	-		GFF1537	0.20	-1.3
1,569,734	+		GFF1537	0.22	+0.6
1,569,742	-		GFF1537	0.23	-0.4
1,569,776	+		GFF1537	0.25	-1.7
1,569,776	+		GFF1537	0.25	+0.3
1,569,784	-		GFF1537	0.26	-0.4
1,569,804	-		GFF1537	0.28	+1.1
1,569,806	-		GFF1537	0.28	-1.3
1,569,836	+		GFF1537	0.30	+0.2
1,569,836	+		GFF1537	0.30	-2.3
1,569,843	+		GFF1537	0.31	+0.1
1,569,844	-		GFF1537	0.31	-0.9
1,569,864	-		GFF1537	0.33	-0.7
1,569,892	+		GFF1537	0.35	-0.3
1,569,892	+		GFF1537	0.35	-0.2
1,569,925	+		GFF1537	0.37	+1.0
1,569,938	-		GFF1537	0.39	+1.3
1,569,939	-		GFF1537	0.39	-0.1
1,569,953	+		GFF1537	0.40	+0.1
1,569,953	+		GFF1537	0.40	+0.3
1,569,953	+		GFF1537	0.40	-0.5
1,569,961	-		GFF1537	0.40	-0.1
1,569,970	+		GFF1537	0.41	-1.8
1,569,975	+		GFF1537	0.42	+0.7
1,569,978	-		GFF1537	0.42	-0.3
1,569,987	+		GFF1537	0.43	+0.9
1,569,987	+		GFF1537	0.43	-0.0
1,569,994	+		GFF1537	0.43	-0.1
1,569,994	+		GFF1537	0.43	+0.6
1,569,994	+		GFF1537	0.43	-1.7
1,569,994	+		GFF1537	0.43	+1.4
1,569,995	-		GFF1537	0.43	-1.8
1,569,999	+		GFF1537	0.44	-1.9
1,569,999	+		GFF1537	0.44	-0.5
1,570,007	-		GFF1537	0.44	+1.7
1,570,007	-		GFF1537	0.44	-0.9
1,570,007	-		GFF1537	0.44	-0.8
1,570,007	-		GFF1537	0.44	-0.3
1,570,023	+		GFF1537	0.45	+0.4
1,570,042	+		GFF1537	0.47	+1.0
1,570,044	+		GFF1537	0.47	-0.4
1,570,050	-		GFF1537	0.48	-1.2
1,570,063	+		GFF1537	0.49	-0.9
1,570,071	-		GFF1537	0.49	-1.0
1,570,081	-		GFF1537	0.50	+0.3
1,570,091	+		GFF1537	0.51	+0.6
1,570,104	-		GFF1537	0.52	-1.4
1,570,113	+		GFF1537	0.53	+0.7
1,570,232	-		GFF1537	0.63	+0.5
1,570,285	-		GFF1537	0.67	-0.6
1,570,285	-		GFF1537	0.67	+1.1
1,570,285	-		GFF1537	0.67	+1.1
1,570,302	+		GFF1537	0.68	+0.3
1,570,310	-		GFF1537	0.69	+0.4
1,570,329	+		GFF1537	0.70	-1.7
1,570,337	-		GFF1537	0.71	-0.6
1,570,345	+		GFF1537	0.72	+0.7
1,570,348	-		GFF1537	0.72	-1.5
1,570,360	+		GFF1537	0.73	+0.4
1,570,365	+		GFF1537	0.73	-1.0
1,570,370	+		GFF1537	0.74	-0.4
1,570,370	+		GFF1537	0.74	-0.8
1,570,370	+		GFF1537	0.74	+0.9
1,570,370	+		GFF1537	0.74	-1.5
1,570,370	+		GFF1537	0.74	+0.6
1,570,370	+		GFF1537	0.74	+0.2
1,570,378	-		GFF1537	0.74	+1.0
1,570,378	-		GFF1537	0.74	-1.6
1,570,400	-		GFF1537	0.76	-1.9
1,570,404	+		GFF1537	0.77	-0.6
1,570,409	+		GFF1537	0.77	+0.6
1,570,409	+		GFF1537	0.77	-0.7
1,570,416	-		GFF1537	0.78	-1.3
1,570,417	-		GFF1537	0.78	-0.8
1,570,429	+		GFF1537	0.79	-1.4
1,570,437	-		GFF1537	0.79	-0.6
1,570,460	+		GFF1537	0.81	-1.2
1,570,465	+		GFF1537	0.81	-3.3
1,570,465	+		GFF1537	0.81	-0.9
1,570,473	-		GFF1537	0.82	-1.0
1,570,483	+		GFF1537	0.83	-2.0
1,570,483	+		GFF1537	0.83	-0.0
1,570,483	+		GFF1537	0.83	-0.6
1,570,488	+		GFF1537	0.83	-1.8
1,570,491	-		GFF1537	0.84	+0.2
1,570,491	-		GFF1537	0.84	-2.3
1,570,491	-		GFF1537	0.84	+0.7
1,570,497	-		GFF1537	0.84	-0.9
1,570,535	+		GFF1537	0.87	+0.8
1,570,549	-		GFF1537	0.88	+0.0
1,570,581	-				-1.5
1,570,591	-				+0.5
1,570,592	-				-1.2
1,570,596	+				-1.7
1,570,596	+				+1.0
1,570,596	+				-0.1
1,570,596	+				+0.6
1,570,596	+				+0.3
1,570,596	+				-0.4
1,570,596	+				-0.6
1,570,596	+				-0.9
1,570,596	+				-0.1
1,570,596	+				-0.6
1,570,604	-				-1.4
1,570,604	-				-1.7
1,570,604	-				-0.3
1,570,604	-				-0.6
1,570,604	-				-0.6
1,570,604	-				-0.6
1,570,604	-				+0.4
1,570,604	-				-1.3
1,570,604	-				-0.3
1,570,604	-				-2.2
1,570,604	-				-0.2
1,570,604	-				+1.8
1,570,614	+				-0.2
1,570,627	-				-1.4
1,570,629	+				+0.4
1,570,629	+				-0.1
1,570,630	+				-1.1
1,570,679	+				-2.0
1,570,680	+				-0.5
1,570,685	+				-1.3
1,570,688	-				+0.6
1,570,693	-				-0.4
1,570,740	+				-1.2
1,570,778	-				-1.8
1,570,813	+				-1.5
1,570,813	+				+1.0
1,570,835	-				+0.1
1,570,851	-				+1.0
1,570,869	-				-1.6
1,570,892	-				+0.1
1,570,910	-				-0.1
1,570,912	-				-1.2
1,570,936	+				-0.8
1,570,941	+				+0.5
1,570,941	+				-0.7
1,570,941	+				+0.1
1,570,941	+				-0.9
1,570,941	+				+1.2
1,570,941	+				-0.8
1,570,941	+				-0.1
1,570,941	+				+0.5
1,570,949	-				-0.8
1,571,032	+				-0.8
1,571,072	-				-0.8
1,571,079	+				-0.2
1,571,087	-				+0.1
1,571,087	-				-0.5
1,571,087	-				-1.3
1,571,087	-				-0.8
1,571,089	+				-1.8
1,571,089	+				+1.6
1,571,089	+				+1.2
1,571,097	-				+0.7
1,571,109	-				+1.0
1,571,135	+				-0.8
1,571,140	+				+0.4
1,571,148	-				+0.2
1,571,179	-		GFF1538	0.12	-0.0
1,571,187	-		GFF1538	0.13	-0.8
1,571,195	+		GFF1538	0.14	+0.2
1,571,250	+		GFF1538	0.21	+0.5
1,571,250	-		GFF1538	0.21	-0.3
1,571,261	-		GFF1538	0.23	+0.2
1,571,278	-		GFF1538	0.25	+0.2
1,571,281	+		GFF1538	0.26	+0.4
1,571,281	+		GFF1538	0.26	-1.3
1,571,299	-		GFF1538	0.28	-0.8
1,571,302	-		GFF1538	0.29	-1.8
1,571,305	+		GFF1538	0.29	+0.1
1,571,313	-		GFF1538	0.30	+0.1
1,571,313	-		GFF1538	0.30	+0.7
1,571,333	-		GFF1538	0.33	-0.3
1,571,357	+		GFF1538	0.36	+2.2
1,571,365	-		GFF1538	0.37	-0.2
1,571,393	+		GFF1538	0.41	+0.0
1,571,401	+		GFF1538	0.42	+0.8
1,571,409	-		GFF1538	0.43	-2.3
1,571,414	+		GFF1538	0.44	+0.9
1,571,420	+		GFF1538	0.45	-0.8
1,571,421	+		GFF1538	0.45	+0.1
1,571,449	-		GFF1538	0.49	-0.7
1,571,455	+		GFF1538	0.49	-2.5
1,571,459	+		GFF1538	0.50	-0.2
1,571,459	+		GFF1538	0.50	-2.5
1,571,463	-		GFF1538	0.50	-0.1
1,571,473	-		GFF1538	0.52	+0.9
1,571,473	-		GFF1538	0.52	+0.3
1,571,483	-		GFF1538	0.53	-0.5
1,571,488	+		GFF1538	0.54	+0.7
1,571,498	-		GFF1538	0.55	+0.7
1,571,556	-		GFF1538	0.63	-2.2
1,571,564	-		GFF1538	0.64	+0.4
1,571,598	+		GFF1538	0.69	-0.4
1,571,598	+		GFF1538	0.69	-0.7
1,571,598	+		GFF1538	0.69	-1.7
1,571,598	+		GFF1538	0.69	-0.3
1,571,598	+		GFF1538	0.69	-0.5
1,571,598	-		GFF1538	0.69	-0.7
1,571,603	-		GFF1538	0.70	+1.1
1,571,606	-		GFF1538	0.70	+0.1
1,571,606	-		GFF1538	0.70	-0.2
1,571,621	+		GFF1538	0.72	+0.4
1,571,640	-		GFF1538	0.75	-0.1
1,571,640	-		GFF1538	0.75	-0.5
1,571,647	-		GFF1538	0.76	-0.9