Strain Fitness in Sphingobium sp. HT1-2 around GFF1507

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,535,240	-		GFF1506	0.28	+1.4
1,535,274	+		GFF1506	0.30	+0.7
1,535,284	-		GFF1506	0.31	+0.6
1,535,284	-		GFF1506	0.31	-0.2
1,535,284	-		GFF1506	0.31	-0.1
1,535,299	+		GFF1506	0.32	+1.0
1,535,307	-		GFF1506	0.33	-1.0
1,535,307	-		GFF1506	0.33	-1.3
1,535,333	-		GFF1506	0.35	-1.9
1,535,333	-		GFF1506	0.35	+0.6
1,535,333	-		GFF1506	0.35	+0.2
1,535,350	-		GFF1506	0.37	-0.1
1,535,350	-		GFF1506	0.37	+0.8
1,535,367	-		GFF1506	0.38	-1.4
1,535,403	+		GFF1506	0.41	+0.6
1,535,403	+		GFF1506	0.41	-0.4
1,535,403	+		GFF1506	0.41	+0.2
1,535,411	-		GFF1506	0.42	-1.1
1,535,411	-		GFF1506	0.42	+0.8
1,535,456	-		GFF1506	0.45	+0.3
1,535,520	-		GFF1506	0.50	+0.1
1,535,522	+		GFF1506	0.51	+1.0
1,535,528	+		GFF1506	0.51	+0.6
1,535,537	-		GFF1506	0.52	-2.6
1,535,538	-		GFF1506	0.52	-2.3
1,535,567	-		GFF1506	0.54	-0.3
1,535,593	+		GFF1506	0.56	+1.1
1,535,644	+		GFF1506	0.61	+0.6
1,535,674	+		GFF1506	0.63	+1.5
1,535,679	+		GFF1506	0.63	-2.8
1,535,723	+		GFF1506	0.67	+1.0
1,535,723	+		GFF1506	0.67	-1.2
1,535,723	+		GFF1506	0.67	-0.1
1,535,723	+		GFF1506	0.67	+0.5
1,535,723	+		GFF1506	0.67	+0.3
1,535,723	+		GFF1506	0.67	+0.4
1,535,731	-		GFF1506	0.68	+0.2
1,535,731	-		GFF1506	0.68	+0.2
1,535,731	-		GFF1506	0.68	-0.1
1,535,731	-		GFF1506	0.68	+0.0
1,535,763	+		GFF1506	0.70	+0.8
1,535,763	+		GFF1506	0.70	-0.2
1,535,768	+		GFF1506	0.71	-1.4
1,535,776	-		GFF1506	0.71	+0.6
1,535,776	-		GFF1506	0.71	+1.3
1,535,776	-		GFF1506	0.71	+0.2
1,535,776	-		GFF1506	0.71	-0.7
1,535,784	-		GFF1506	0.72	-0.8
1,535,795	-		GFF1506	0.73	-2.1
1,535,836	+		GFF1506	0.76	-0.1
1,535,836	+		GFF1506	0.76	+0.1
1,535,836	+		GFF1506	0.76	-0.7
1,535,839	-		GFF1506	0.77	-2.2
1,535,844	-		GFF1506	0.77	+0.8
1,535,844	-		GFF1506	0.77	+0.5
1,535,844	-		GFF1506	0.77	-0.4
1,535,844	-		GFF1506	0.77	+0.4
1,535,844	-		GFF1506	0.77	-1.1
1,535,858	+		GFF1506	0.78	-0.6
1,535,874	+		GFF1506	0.79	-1.6
1,535,874	+		GFF1506	0.79	-1.5
1,535,874	+		GFF1506	0.79	+0.2
1,535,882	-		GFF1506	0.80	+0.4
1,535,889	+		GFF1506	0.81	-1.5
1,535,892	-		GFF1506	0.81	+0.7
1,535,893	-		GFF1506	0.81	+0.5
1,535,923	+		GFF1506	0.83	-0.9
1,535,928	+		GFF1506	0.84	-1.3
1,535,933	+		GFF1506	0.84	+0.1
1,535,936	-		GFF1506	0.85	-0.1
1,535,936	-		GFF1506	0.85	-0.9
1,535,941	-		GFF1506	0.85	-1.2
1,535,993	+		GFF1506	0.89	-1.2
1,535,994	+		GFF1506	0.89	+0.3
1,535,994	+		GFF1506	0.89	-0.2
1,535,995	-		GFF1506	0.89	+1.1
1,536,002	-		GFF1506	0.90	+0.1
1,536,002	-		GFF1506	0.90	+0.3
1,536,004	+				+0.1
1,536,011	+				-0.6
1,536,012	+				-1.3
1,536,012	+				-1.0
1,536,012	-				-0.4
1,536,020	-				+0.8
1,536,020	-				+1.1
1,536,026	+				+1.7
1,536,026	+				+0.7
1,536,026	+				-0.4
1,536,029	-				+0.6
1,536,029	-				-0.1
1,536,029	-				-0.2
1,536,033	+				-1.1
1,536,033	+				-1.8
1,536,034	-				-1.9
1,536,034	-				-0.7
1,536,034	-				-1.1
1,536,034	-				+0.2
1,536,034	-				+0.1
1,536,034	-				+0.5
1,536,039	-				-1.1
1,536,041	-				+0.2
1,536,095	+				-0.2
1,536,095	+				+2.0
1,536,105	+				-1.1
1,536,105	+				+0.1
1,536,105	+				+0.9
1,536,105	+				+0.1
1,536,105	+				-1.2
1,536,105	+				+1.1
1,536,105	+				-1.8
1,536,105	+				+0.3
1,536,105	+				-0.9
1,536,105	+				+0.0
1,536,105	+				-3.0
1,536,105	+				-0.7
1,536,105	+				-1.0
1,536,105	+				-0.8
1,536,105	+				-1.1
1,536,113	-				+1.6
1,536,113	-				-1.7
1,536,113	-				-0.1
1,536,113	-				-0.1
1,536,113	-				+0.4
1,536,113	-				-0.5
1,536,113	-				-0.6
1,536,113	-				+0.4
1,536,113	-				+0.8
1,536,113	-				-0.6
1,536,113	-				-0.4
1,536,115	-				+0.8
1,536,151	+				-0.2
1,536,157	-				-0.2
1,536,169	-				-0.8
1,536,190	+				+0.3
1,536,198	-				-1.5
1,536,199	+				+0.3
1,536,204	+				+0.1
1,536,217	+				+0.5
1,536,217	+				+0.4
1,536,230	-				+0.2
1,536,327	+				+0.2
1,536,330	-				-0.7
1,536,335	-				+0.3
1,536,335	-				-0.1
1,536,335	-				-1.4
1,536,407	+		GFF1507	0.14	-1.5
1,536,407	+		GFF1507	0.14	-0.9
1,536,414	+		GFF1507	0.14	+0.2
1,536,423	+		GFF1507	0.15	-0.4
1,536,433	+		GFF1507	0.16	+0.7
1,536,433	+		GFF1507	0.16	+0.8
1,536,446	+		GFF1507	0.16	+0.0
1,536,457	-		GFF1507	0.17	-0.6
1,536,459	+		GFF1507	0.17	-2.2
1,536,462	-		GFF1507	0.17	+0.7
1,536,462	-		GFF1507	0.17	+0.6
1,536,467	-		GFF1507	0.18	+0.3
1,536,468	+		GFF1507	0.18	-1.2
1,536,468	+		GFF1507	0.18	+0.0
1,536,508	+		GFF1507	0.20	-0.4
1,536,513	+		GFF1507	0.21	-0.5
1,536,513	+		GFF1507	0.21	+0.5
1,536,513	+		GFF1507	0.21	-1.0
1,536,518	+		GFF1507	0.21	+0.1
1,536,518	+		GFF1507	0.21	-0.5
1,536,518	+		GFF1507	0.21	-1.2
1,536,518	+		GFF1507	0.21	-0.8
1,536,526	-		GFF1507	0.21	-0.4
1,536,526	-		GFF1507	0.21	+1.1
1,536,526	-		GFF1507	0.21	-1.1
1,536,526	-		GFF1507	0.21	-0.2
1,536,533	-		GFF1507	0.22	-1.4
1,536,537	+		GFF1507	0.22	+0.4
1,536,542	+		GFF1507	0.22	-0.2
1,536,550	-		GFF1507	0.23	+0.9
1,536,592	+		GFF1507	0.25	+0.7
1,536,597	+		GFF1507	0.26	-0.9
1,536,610	-		GFF1507	0.27	-1.1
1,536,648	+		GFF1507	0.29	+0.0
1,536,656	-		GFF1507	0.29	+0.4
1,536,670	+		GFF1507	0.30	+0.1
1,536,678	-		GFF1507	0.31	-0.5
1,536,678	-		GFF1507	0.31	-0.2
1,536,684	+		GFF1507	0.31	+1.2
1,536,697	-		GFF1507	0.32	-0.5
1,536,697	-		GFF1507	0.32	+0.8
1,536,707	-		GFF1507	0.33	-0.6
1,536,731	+		GFF1507	0.34	+1.2
1,536,748	+		GFF1507	0.35	-0.3
1,536,758	-		GFF1507	0.36	-0.0
1,536,785	+		GFF1507	0.38	-0.3
1,536,785	-		GFF1507	0.38	-1.0
1,536,800	+		GFF1507	0.38	+0.3
1,536,800	+		GFF1507	0.38	-0.3
1,536,800	-		GFF1507	0.38	+0.4
1,536,800	-		GFF1507	0.38	+0.8
1,536,804	-		GFF1507	0.39	-2.5
1,536,804	-		GFF1507	0.39	-0.4
1,536,805	+		GFF1507	0.39	-0.8
1,536,833	-		GFF1507	0.40	-0.0
1,536,836	+		GFF1507	0.41	+0.2
1,536,836	+		GFF1507	0.41	+1.1
1,536,836	+		GFF1507	0.41	+1.0
1,536,844	-		GFF1507	0.41	+0.1
1,536,844	-		GFF1507	0.41	-0.7
1,536,844	-		GFF1507	0.41	+0.3
1,536,844	-		GFF1507	0.41	+0.1
1,536,844	-		GFF1507	0.41	-0.5
1,536,884	+		GFF1507	0.44	+0.1
1,536,886	+		GFF1507	0.44	-1.1
1,536,886	+		GFF1507	0.44	+0.1
1,536,892	-		GFF1507	0.44	+0.7
1,536,894	-		GFF1507	0.44	+0.6
1,536,894	-		GFF1507	0.44	-1.5
1,536,894	-		GFF1507	0.44	+0.0
1,536,909	+		GFF1507	0.45	+0.3
1,536,979	-		GFF1507	0.50	-1.3
1,536,980	+		GFF1507	0.50	-1.6
1,536,984	+		GFF1507	0.50	-1.4
1,537,016	+		GFF1507	0.52	-0.3
1,537,024	-		GFF1507	0.52	-0.1
1,537,024	-		GFF1507	0.52	+2.0
1,537,030	+		GFF1507	0.53	-0.2
1,537,038	-		GFF1507	0.53	-0.7
1,537,038	-		GFF1507	0.53	+1.2
1,537,040	+		GFF1507	0.53	-1.0
1,537,040	+		GFF1507	0.53	-0.5
1,537,048	-		GFF1507	0.54	-0.7
1,537,059	-		GFF1507	0.55	-0.5
1,537,088	-		GFF1507	0.56	+0.8
1,537,089	-		GFF1507	0.56	+1.6
1,537,098	-		GFF1507	0.57	-1.2
1,537,120	-		GFF1507	0.58	-1.0
1,537,131	+		GFF1507	0.59	+0.8
1,537,136	+		GFF1507	0.59	+1.0
1,537,151	+		GFF1507	0.60	-0.5
1,537,160	+		GFF1507	0.61	-0.5
1,537,173	-		GFF1507	0.62	-0.7
1,537,173	-		GFF1507	0.62	-0.6
1,537,175	+		GFF1507	0.62	+0.4
1,537,194	+		GFF1507	0.63	-2.1
1,537,199	+		GFF1507	0.63	+1.1
1,537,199	+		GFF1507	0.63	-0.5
1,537,200	-		GFF1507	0.63	+0.7
1,537,207	-		GFF1507	0.64	-0.6
1,537,207	-		GFF1507	0.64	+0.2
1,537,207	-		GFF1507	0.64	+0.4
1,537,212	+		GFF1507	0.64	+1.0
1,537,220	-		GFF1507	0.65	-1.5
1,537,224	+		GFF1507	0.65	-0.7
1,537,281	+		GFF1507	0.68	+0.5
1,537,281	+		GFF1507	0.68	+1.0
1,537,282	+		GFF1507	0.68	-1.3
1,537,288	-		GFF1507	0.69	-0.5
1,537,289	-		GFF1507	0.69	+0.6
1,537,303	+		GFF1507	0.70	-0.8
1,537,311	-		GFF1507	0.70	+1.3
1,537,325	+		GFF1507	0.71	-0.1
1,537,333	+		GFF1507	0.72	+1.6
1,537,347	+		GFF1507	0.73	-0.5
1,537,347	+		GFF1507	0.73	-0.9
1,537,351	-		GFF1507	0.73	+0.6
1,537,357	+		GFF1507	0.73	+0.0
1,537,357	+		GFF1507	0.73	-0.8
1,537,365	-		GFF1507	0.74	+1.2
1,537,401	+		GFF1507	0.76	-0.1
1,537,431	-		GFF1507	0.78	+0.0
1,537,443	-		GFF1507	0.79	+0.3
1,537,454	+		GFF1507	0.79	+1.4
1,537,454	+		GFF1507	0.79	-2.1
1,537,454	+		GFF1507	0.79	-0.2
1,537,454	+		GFF1507	0.79	+0.3
1,537,454	+		GFF1507	0.79	+0.4
1,537,456	-		GFF1507	0.79	+1.3
1,537,462	-		GFF1507	0.80	-0.2
1,537,462	-		GFF1507	0.80	+0.4
1,537,462	-		GFF1507	0.80	+0.9
1,537,462	-		GFF1507	0.80	-1.2
1,537,462	-		GFF1507	0.80	+0.9
1,537,489	-		GFF1507	0.81	-0.3
1,537,531	-		GFF1507	0.84	+0.1
1,537,542	-		GFF1507	0.85	+0.2
1,537,572	+		GFF1507	0.87	-0.5
1,537,572	+		GFF1507	0.87	+0.7
1,537,572	+		GFF1507	0.87	+0.5
1,537,572	+		GFF1507	0.87	-0.3
1,537,573	+		GFF1507	0.87	+1.5
1,537,573	+		GFF1507	0.87	+0.1
1,537,580	-		GFF1507	0.87	+0.6
1,537,580	-		GFF1507	0.87	-0.4
1,537,580	-		GFF1507	0.87	-0.3
1,537,580	-		GFF1507	0.87	-0.4
1,537,580	-		GFF1507	0.87	+0.7
1,537,580	-		GFF1507	0.87	-0.5
1,537,581	-		GFF1507	0.87	+0.5
1,537,581	-		GFF1507	0.87	-0.1
1,537,581	-		GFF1507	0.87	-2.0
1,537,604	+		GFF1507	0.89	+1.3
1,537,604	+		GFF1507	0.89	+0.1
1,537,604	+		GFF1507	0.89	+1.5
1,537,604	+		GFF1507	0.89	+0.7
1,537,608	+		GFF1507	0.89	-1.7
1,537,612	-		GFF1507	0.89	-0.3
1,537,614	+		GFF1507	0.89	-1.6
1,537,614	+		GFF1507	0.89	+1.3
1,537,615	+		GFF1507	0.89	-0.2
1,537,617	-		GFF1507	0.89	-0.1
1,537,622	-		GFF1507	0.90	+0.3
1,537,622	-		GFF1507	0.90	+0.0
1,537,622	-		GFF1507	0.90	-0.0
1,537,622	-		GFF1507	0.90	+0.9
1,537,627	+				+0.8
1,537,633	+				-0.1
1,537,648	+				+1.3
1,537,648	+				+0.6
1,537,660	-				-0.6
1,537,666	-				+0.2
1,537,670	+				+0.2
1,537,678	-				-0.2
1,537,682	+				-0.6
1,537,688	+				+0.2
1,537,689	-				+0.4
1,537,705	+				-2.1
1,537,713	-				+0.7
1,537,713	-				+0.8
1,537,719	-				-0.7
1,537,740	+				-0.5
1,537,748	-				-0.0
1,537,772	+				-0.5
1,537,789	-				-0.6
1,537,799	-				-0.2
1,537,807	+				+0.9
1,537,820	-				-0.0
1,537,848	+				-0.4
1,537,848	+				-0.1
1,537,848	+				+0.2
1,537,856	-				+0.2
1,537,856	-				-0.8
1,537,856	-				-0.4
1,537,856	-				+0.9
1,537,856	-				+1.1
1,537,860	+				+0.1
1,537,860	+				+0.1
1,537,868	-				+0.0
1,537,868	-				-1.5
1,537,868	-				+0.3
1,537,868	-				-0.6
1,537,868	-				+0.3
1,537,878	+		GFF1508	0.10	-0.2
1,537,878	+		GFF1508	0.10	-0.1
1,537,878	+		GFF1508	0.10	-1.5
1,537,878	+		GFF1508	0.10	-0.3
1,537,878	+		GFF1508	0.10	+0.5
1,537,878	+		GFF1508	0.10	+2.4
1,537,878	+		GFF1508	0.10	+0.7
1,537,878	+		GFF1508	0.10	+1.6
1,537,878	+		GFF1508	0.10	-0.3
1,537,878	+		GFF1508	0.10	-0.2
1,537,878	+		GFF1508	0.10	-0.4
1,537,878	+		GFF1508	0.10	+0.9
1,537,878	+		GFF1508	0.10	+0.6
1,537,883	-		GFF1508	0.11	+0.2
1,537,886	-		GFF1508	0.11	+0.3
1,537,886	-		GFF1508	0.11	+0.3
1,537,886	-		GFF1508	0.11	+0.3
1,537,886	-		GFF1508	0.11	-0.9
1,537,886	-		GFF1508	0.11	+1.5
1,537,886	-		GFF1508	0.11	+0.3
1,537,886	-		GFF1508	0.11	+0.3
1,537,886	-		GFF1508	0.11	+0.4
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1,538,621	+		GFF1508	0.89	+1.3
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1,538,647	-				+0.5
1,538,701	+				+0.3
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1,538,711	+				+0.3
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1,538,714	-				+0.3
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1,538,730	+				+0.8
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1,538,742	-				-0.7
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1,538,742	-				+0.8
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1,538,744	+				+0.8
1,538,744	+				-1.5
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1,538,762	-				+0.6
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