Strain Fitness in Sphingobium sp. HT1-2 around GFF1505

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,533,033	-				-0.1
1,533,033	-				+0.4
1,533,048	+				+0.1
1,533,051	-				-0.0
1,533,051	-				-0.1
1,533,051	-				-0.1
1,533,051	-				-0.3
1,533,053	+				-1.8
1,533,053	+				-0.2
1,533,053	+				+0.0
1,533,053	+				-0.3
1,533,053	+				-0.5
1,533,053	+				+0.6
1,533,061	-				+0.3
1,533,061	-				+0.2
1,533,061	-				+0.1
1,533,066	-		GFF1504	0.10	+0.3
1,533,084	-		GFF1504	0.12	-0.7
1,533,096	+		GFF1504	0.13	+1.1
1,533,096	+		GFF1504	0.13	+0.6
1,533,099	-		GFF1504	0.13	+1.0
1,533,099	-		GFF1504	0.13	-2.1
1,533,099	-		GFF1504	0.13	+0.3
1,533,167	-		GFF1504	0.20	-0.1
1,533,167	-		GFF1504	0.20	-0.5
1,533,167	-		GFF1504	0.20	-1.9
1,533,167	-		GFF1504	0.20	+0.3
1,533,167	-		GFF1504	0.20	-0.9
1,533,167	-		GFF1504	0.20	-1.3
1,533,169	+		GFF1504	0.20	-0.1
1,533,177	-		GFF1504	0.21	+0.3
1,533,184	+		GFF1504	0.21	-1.5
1,533,184	+		GFF1504	0.21	-0.7
1,533,184	+		GFF1504	0.21	-0.5
1,533,192	-		GFF1504	0.22	-2.1
1,533,211	-		GFF1504	0.24	-0.3
1,533,211	-		GFF1504	0.24	+0.4
1,533,211	-		GFF1504	0.24	-2.1
1,533,211	-		GFF1504	0.24	-0.2
1,533,211	-		GFF1504	0.24	-0.4
1,533,225	-		GFF1504	0.25	-0.5
1,533,229	-		GFF1504	0.25	-1.0
1,533,229	-		GFF1504	0.25	+0.5
1,533,232	-		GFF1504	0.26	+1.3
1,533,259	-		GFF1504	0.28	-0.3
1,533,264	-		GFF1504	0.29	+0.1
1,533,264	-		GFF1504	0.29	+1.9
1,533,273	+		GFF1504	0.30	-0.4
1,533,273	+		GFF1504	0.30	+0.5
1,533,273	+		GFF1504	0.30	+0.3
1,533,273	+		GFF1504	0.30	-0.1
1,533,273	+		GFF1504	0.30	-3.3
1,533,273	+		GFF1504	0.30	-0.7
1,533,273	+		GFF1504	0.30	+0.2
1,533,273	+		GFF1504	0.30	-0.5
1,533,273	+		GFF1504	0.30	+0.4
1,533,281	-		GFF1504	0.30	-0.9
1,533,281	-		GFF1504	0.30	-0.1
1,533,281	-		GFF1504	0.30	-1.0
1,533,281	-		GFF1504	0.30	-0.6
1,533,281	-		GFF1504	0.30	-1.8
1,533,282	+		GFF1504	0.30	-0.5
1,533,282	+		GFF1504	0.30	-1.2
1,533,282	+		GFF1504	0.30	+0.0
1,533,282	+		GFF1504	0.30	+0.3
1,533,282	+		GFF1504	0.30	-1.0
1,533,290	-		GFF1504	0.31	-1.0
1,533,290	-		GFF1504	0.31	-0.5
1,533,290	-		GFF1504	0.31	+1.2
1,533,301	+		GFF1504	0.32	-1.0
1,533,301	+		GFF1504	0.32	+0.7
1,533,303	-		GFF1504	0.32	-0.1
1,533,308	+		GFF1504	0.33	-1.3
1,533,309	-		GFF1504	0.33	-0.5
1,533,316	-		GFF1504	0.34	-0.8
1,533,317	+		GFF1504	0.34	-0.2
1,533,317	+		GFF1504	0.34	-0.8
1,533,325	-		GFF1504	0.34	+0.5
1,533,348	+		GFF1504	0.37	+0.1
1,533,348	+		GFF1504	0.37	+1.6
1,533,348	+		GFF1504	0.37	-1.2
1,533,348	+		GFF1504	0.37	+0.5
1,533,348	+		GFF1504	0.37	+0.3
1,533,392	+		GFF1504	0.41	+0.2
1,533,398	-		GFF1504	0.41	+0.8
1,533,416	-		GFF1504	0.43	-1.1
1,533,417	+		GFF1504	0.43	-2.8
1,533,417	+		GFF1504	0.43	-0.1
1,533,417	+		GFF1504	0.43	+0.4
1,533,425	-		GFF1504	0.44	+0.1
1,533,461	+		GFF1504	0.47	-0.1
1,533,461	+		GFF1504	0.47	-0.6
1,533,482	+		GFF1504	0.49	+0.4
1,533,490	-		GFF1504	0.50	-0.5
1,533,509	+		GFF1504	0.52	+0.8
1,533,516	+		GFF1504	0.52	-0.5
1,533,524	-		GFF1504	0.53	-1.0
1,533,524	-		GFF1504	0.53	+0.2
1,533,526	+		GFF1504	0.53	-1.1
1,533,534	-		GFF1504	0.54	+0.6
1,533,534	-		GFF1504	0.54	-0.3
1,533,551	+		GFF1504	0.55	+0.9
1,533,559	+		GFF1504	0.56	-0.5
1,533,559	+		GFF1504	0.56	+0.0
1,533,559	-		GFF1504	0.56	-1.8
1,533,571	-		GFF1504	0.57	-0.1
1,533,610	-		GFF1504	0.61	+0.6
1,533,619	+		GFF1504	0.62	-1.2
1,533,631	+		GFF1504	0.63	+0.2
1,533,637	+		GFF1504	0.63	-1.7
1,533,645	+		GFF1504	0.64	+0.2
1,533,645	-		GFF1504	0.64	+0.0
1,533,653	-		GFF1504	0.65	+1.0
1,533,672	-		GFF1504	0.67	-0.5
1,533,672	-		GFF1504	0.67	+0.9
1,533,672	-		GFF1504	0.67	-0.9
1,533,689	+		GFF1504	0.68	+0.7
1,533,697	-		GFF1504	0.69	+0.0
1,533,697	-		GFF1504	0.69	+0.7
1,533,775	-		GFF1504	0.76	-1.5
1,533,794	+		GFF1504	0.78	-0.1
1,533,806	-		GFF1504	0.79	+1.0
1,533,822	+		GFF1504	0.81	+0.2
1,533,835	-		GFF1504	0.82	-0.9
1,533,857	+		GFF1504	0.84	-0.4
1,533,869	+		GFF1504	0.85	+0.5
1,533,935	+				+1.3
1,533,935	+				-0.7
1,533,935	+				+0.8
1,533,940	+				-0.5
1,533,940	+				+0.2
1,533,943	-				-0.8
1,533,948	-				+0.3
1,533,983	+				+0.6
1,533,983	+				-0.8
1,533,991	-				-0.3
1,533,995	-				+0.1
1,534,031	-				-0.2
1,534,081	+				-1.2
1,534,094	-				-0.9
1,534,130	-		GFF1505	0.12	-1.4
1,534,148	-		GFF1505	0.15	-0.2
1,534,160	+		GFF1505	0.16	+0.1
1,534,174	-		GFF1505	0.18	+0.8
1,534,197	+		GFF1505	0.20	-0.2
1,534,215	-		GFF1505	0.22	+0.4
1,534,232	+		GFF1505	0.24	+0.8
1,534,265	+		GFF1505	0.28	+0.9
1,534,273	-		GFF1505	0.29	-0.6
1,534,317	+		GFF1505	0.35	-1.7
1,534,317	+		GFF1505	0.35	-0.1
1,534,317	+		GFF1505	0.35	+0.7
1,534,323	+		GFF1505	0.35	+1.4
1,534,323	+		GFF1505	0.35	-1.3
1,534,325	-		GFF1505	0.35	+1.4
1,534,325	-		GFF1505	0.35	+0.8
1,534,325	-		GFF1505	0.35	+0.3
1,534,331	-		GFF1505	0.36	+0.3
1,534,333	+		GFF1505	0.36	-2.4
1,534,336	+		GFF1505	0.37	-0.2
1,534,342	-		GFF1505	0.37	-1.3
1,534,348	+		GFF1505	0.38	+0.5
1,534,351	-		GFF1505	0.39	+0.2
1,534,353	+		GFF1505	0.39	+0.1
1,534,353	+		GFF1505	0.39	+0.9
1,534,353	+		GFF1505	0.39	-1.8
1,534,353	+		GFF1505	0.39	-0.8
1,534,353	+		GFF1505	0.39	+1.0
1,534,353	+		GFF1505	0.39	-0.1
1,534,361	-		GFF1505	0.40	+0.3
1,534,361	-		GFF1505	0.40	-0.6
1,534,361	-		GFF1505	0.40	+0.4
1,534,361	-		GFF1505	0.40	+0.7
1,534,361	-		GFF1505	0.40	+0.3
1,534,399	-		GFF1505	0.44	-0.6
1,534,400	-		GFF1505	0.44	-0.7
1,534,415	+		GFF1505	0.46	+0.1
1,534,415	+		GFF1505	0.46	+0.9
1,534,418	-		GFF1505	0.46	+0.2
1,534,423	-		GFF1505	0.47	+0.2
1,534,425	+		GFF1505	0.47	+1.8
1,534,435	+		GFF1505	0.48	-0.6
1,534,435	+		GFF1505	0.48	-0.4
1,534,438	-		GFF1505	0.49	-0.8
1,534,444	+		GFF1505	0.49	+1.2
1,534,444	+		GFF1505	0.49	+0.9
1,534,444	+		GFF1505	0.49	-1.1
1,534,445	+		GFF1505	0.50	+1.3
1,534,452	-		GFF1505	0.50	-0.5
1,534,452	-		GFF1505	0.50	-1.1
1,534,452	-		GFF1505	0.50	-1.7
1,534,458	-		GFF1505	0.51	-0.6
1,534,458	-		GFF1505	0.51	-0.5
1,534,473	-		GFF1505	0.53	+0.6
1,534,475	+		GFF1505	0.53	+0.8
1,534,480	+		GFF1505	0.54	+0.7
1,534,482	-		GFF1505	0.54	-1.5
1,534,482	-		GFF1505	0.54	+0.6
1,534,507	+		GFF1505	0.57	-0.8
1,534,519	+		GFF1505	0.58	-0.4
1,534,519	+		GFF1505	0.58	-1.1
1,534,519	+		GFF1505	0.58	-1.3
1,534,527	-		GFF1505	0.59	+0.5
1,534,527	-		GFF1505	0.59	-2.6
1,534,527	-		GFF1505	0.59	-0.8
1,534,528	-		GFF1505	0.59	-0.3
1,534,533	+		GFF1505	0.60	-0.7
1,534,533	+		GFF1505	0.60	-0.6
1,534,536	-		GFF1505	0.60	-1.2
1,534,536	-		GFF1505	0.60	-2.5
1,534,546	+		GFF1505	0.61	-0.6
1,534,546	+		GFF1505	0.61	-0.3
1,534,546	+		GFF1505	0.61	+0.2
1,534,553	-		GFF1505	0.62	-0.3
1,534,554	-		GFF1505	0.62	-0.5
1,534,554	-		GFF1505	0.62	-2.3
1,534,565	-		GFF1505	0.64	+0.4
1,534,577	+		GFF1505	0.65	-0.0
1,534,577	+		GFF1505	0.65	+0.4
1,534,577	+		GFF1505	0.65	-0.3
1,534,585	+		GFF1505	0.66	-0.4
1,534,585	-		GFF1505	0.66	-1.1
1,534,587	+		GFF1505	0.66	+0.0
1,534,587	+		GFF1505	0.66	-0.6
1,534,608	-		GFF1505	0.69	+0.0
1,534,617	+		GFF1505	0.70	-0.1
1,534,625	-		GFF1505	0.71	+1.0
1,534,626	-		GFF1505	0.71	+0.6
1,534,638	+		GFF1505	0.72	+1.2
1,534,671	+		GFF1505	0.76	+0.6
1,534,671	+		GFF1505	0.76	+0.2
1,534,676	+		GFF1505	0.77	-2.5
1,534,679	-		GFF1505	0.77	-1.9
1,534,679	-		GFF1505	0.77	+0.0
1,534,681	+		GFF1505	0.77	+0.8
1,534,684	-		GFF1505	0.78	+0.2
1,534,684	-		GFF1505	0.78	+1.3
1,534,691	+		GFF1505	0.79	-0.5
1,534,696	+		GFF1505	0.79	-0.4
1,534,696	+		GFF1505	0.79	+1.8
1,534,699	-		GFF1505	0.80	-0.5
1,534,699	-		GFF1505	0.80	-1.7
1,534,699	-		GFF1505	0.80	+0.3
1,534,701	+		GFF1505	0.80	+0.1
1,534,701	+		GFF1505	0.80	-0.4
1,534,701	+		GFF1505	0.80	-0.0
1,534,701	+		GFF1505	0.80	+1.3
1,534,703	-		GFF1505	0.80	-0.6
1,534,703	-		GFF1505	0.80	+0.5
1,534,703	-		GFF1505	0.80	+0.4
1,534,704	-		GFF1505	0.80	-1.6
1,534,704	-		GFF1505	0.80	-0.8
1,534,704	-		GFF1505	0.80	-1.0
1,534,709	-		GFF1505	0.81	-0.2
1,534,709	-		GFF1505	0.81	+0.0
1,534,719	-		GFF1505	0.82	+0.2
1,534,719	-		GFF1505	0.82	+1.4
1,534,729	-		GFF1505	0.83	+0.3
1,534,736	+		GFF1505	0.84	+1.1
1,534,749	+		GFF1505	0.85	+0.5
1,534,749	-		GFF1505	0.85	+1.1
1,534,749	-		GFF1505	0.85	-1.7
1,534,749	-		GFF1505	0.85	-1.8
1,534,749	-		GFF1505	0.85	+0.8
1,534,749	-		GFF1505	0.85	+0.1
1,534,749	-		GFF1505	0.85	+0.6
1,534,749	-		GFF1505	0.85	+0.5
1,534,749	-		GFF1505	0.85	+0.5
1,534,777	+		GFF1505	0.89	+0.1
1,534,785	-		GFF1505	0.90	-0.5
1,534,785	-		GFF1505	0.90	-0.5
1,534,790	-				-1.0
1,534,835	-				+0.7
1,534,835	-				-0.3
1,534,835	-				-0.1
1,534,835	-				+1.0
1,534,839	+				-0.2
1,534,845	-				+0.0
1,534,845	-				-1.1
1,534,845	-				-0.5
1,534,852	+				-1.0
1,534,857	+				-0.7
1,534,865	-				-1.3
1,534,876	-				+0.0
1,534,905	-				-1.5
1,534,911	+				-0.5
1,534,911	+				-3.0
1,534,911	+				+1.0
1,534,943	+				+0.3
1,534,948	+				-1.5
1,534,952	-				-0.8
1,534,967	+				-0.4
1,534,975	-				-0.6
1,534,979	+				+0.4
1,534,979	+				-1.8
1,534,979	+				+0.5
1,534,987	-				-0.0
1,534,991	+				+0.4
1,534,996	+				+0.3
1,534,999	-				-1.1
1,535,041	+		GFF1506	0.11	-0.2
1,535,041	+		GFF1506	0.11	-0.2
1,535,041	+		GFF1506	0.11	-0.3
1,535,046	+		GFF1506	0.12	-0.2
1,535,049	-		GFF1506	0.12	+1.2
1,535,049	-		GFF1506	0.12	-0.8
1,535,049	-		GFF1506	0.12	+0.8
1,535,054	-		GFF1506	0.12	-1.7
1,535,059	-		GFF1506	0.13	-0.4
1,535,059	-		GFF1506	0.13	+0.5
1,535,059	-		GFF1506	0.13	-1.5
1,535,062	-		GFF1506	0.13	-0.9
1,535,062	-		GFF1506	0.13	-0.1
1,535,062	-		GFF1506	0.13	+0.2
1,535,085	+		GFF1506	0.15	+0.9
1,535,085	+		GFF1506	0.15	+0.1
1,535,090	+		GFF1506	0.15	-0.2
1,535,092	+		GFF1506	0.15	-1.3
1,535,093	-		GFF1506	0.15	+1.0
1,535,093	-		GFF1506	0.15	+0.8
1,535,093	-		GFF1506	0.15	+1.0
1,535,093	-		GFF1506	0.15	-0.8
1,535,099	+		GFF1506	0.16	+0.7
1,535,107	-		GFF1506	0.17	-1.2
1,535,107	-		GFF1506	0.17	+0.3
1,535,107	-		GFF1506	0.17	+0.3
1,535,132	+		GFF1506	0.19	+0.5
1,535,139	+		GFF1506	0.19	-0.6
1,535,147	-		GFF1506	0.20	-0.2
1,535,172	+		GFF1506	0.22	+0.6
1,535,172	+		GFF1506	0.22	-0.7
1,535,180	-		GFF1506	0.23	+0.4
1,535,180	-		GFF1506	0.23	+0.7
1,535,240	-		GFF1506	0.28	+1.4
1,535,274	+		GFF1506	0.30	+0.7
1,535,284	-		GFF1506	0.31	+0.6
1,535,284	-		GFF1506	0.31	-0.2
1,535,284	-		GFF1506	0.31	-0.1
1,535,299	+		GFF1506	0.32	+1.0
1,535,307	-		GFF1506	0.33	-1.0
1,535,307	-		GFF1506	0.33	-1.3
1,535,333	-		GFF1506	0.35	-1.9
1,535,333	-		GFF1506	0.35	+0.6
1,535,333	-		GFF1506	0.35	+0.2
1,535,350	-		GFF1506	0.37	-0.1
1,535,350	-		GFF1506	0.37	+0.8
1,535,367	-		GFF1506	0.38	-1.4
1,535,403	+		GFF1506	0.41	+0.6
1,535,403	+		GFF1506	0.41	-0.4
1,535,403	+		GFF1506	0.41	+0.2
1,535,411	-		GFF1506	0.42	-1.1
1,535,411	-		GFF1506	0.42	+0.8
1,535,456	-		GFF1506	0.45	+0.3
1,535,520	-		GFF1506	0.50	+0.1
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