Strain Fitness in Sphingobium sp. HT1-2 around GFF1498

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,523,764	+				+0.0
1,523,779	+				-0.5
1,523,784	+				+0.5
1,523,789	-				-0.2
1,523,799	+				-1.6
1,523,799	+				+0.6
1,523,802	-				-1.1
1,523,807	-				-0.6
1,523,807	-				+0.2
1,523,930	-		GFF1497	0.19	-0.7
1,523,959	-		GFF1497	0.23	+0.3
1,524,126	+		GFF1497	0.45	-0.3
1,524,126	+		GFF1497	0.45	-0.4
1,524,126	+		GFF1497	0.45	+0.8
1,524,134	-		GFF1497	0.46	+0.5
1,524,134	-		GFF1497	0.46	-0.5
1,524,134	-		GFF1497	0.46	-1.1
1,524,134	-		GFF1497	0.46	+1.0
1,524,139	-		GFF1497	0.47	-1.4
1,524,139	-		GFF1497	0.47	-0.7
1,524,150	+		GFF1497	0.48	-2.3
1,524,150	+		GFF1497	0.48	-1.3
1,524,150	+		GFF1497	0.48	-0.8
1,524,158	-		GFF1497	0.49	-0.6
1,524,158	-		GFF1497	0.49	+0.9
1,524,169	+		GFF1497	0.51	-1.4
1,524,174	+		GFF1497	0.52	-1.2
1,524,188	+		GFF1497	0.53	+0.4
1,524,190	+		GFF1497	0.54	+0.3
1,524,198	-		GFF1497	0.55	-1.2
1,524,231	-		GFF1497	0.59	+0.8
1,524,248	-		GFF1497	0.61	+1.7
1,524,257	-		GFF1497	0.63	+1.3
1,524,263	+		GFF1497	0.63	-2.3
1,524,266	-		GFF1497	0.64	-0.5
1,524,269	+		GFF1497	0.64	+0.4
1,524,289	-		GFF1497	0.67	-0.5
1,524,318	+		GFF1497	0.71	+0.6
1,524,326	-		GFF1497	0.72	+0.6
1,524,328	+		GFF1497	0.72	-1.3
1,524,368	-		GFF1497	0.77	+0.3
1,524,385	-		GFF1497	0.80	-0.3
1,524,458	+		GFF1497	0.89	+1.0
1,524,465	+				+0.2
1,524,465	+				+0.9
1,524,465	+				+0.4
1,524,465	+				+0.4
1,524,465	+				-0.5
1,524,466	-				+0.2
1,524,473	-				+0.1
1,524,473	-				-0.2
1,524,483	-				-0.1
1,524,510	+				-1.0
1,524,518	-				+1.9
1,524,518	-				-1.6
1,524,552	+				-0.9
1,524,552	+				-0.8
1,524,566	+				-2.0
1,524,568	+				-0.5
1,524,568	-				-0.8
1,524,571	+				+0.9
1,524,571	+				-0.3
1,524,571	+				+2.0
1,524,571	+				-0.9
1,524,571	+				+0.8
1,524,571	+				-1.3
1,524,571	+				-1.7
1,524,577	-				-0.8
1,524,579	-				-1.5
1,524,579	-				-1.5
1,524,579	-				-1.6
1,524,579	-				-1.6
1,524,585	+				-1.5
1,524,586	+				-0.9
1,524,586	+				+0.0
1,524,594	-				-0.9
1,524,594	-				-1.1
1,524,594	-				-0.1
1,524,594	-				+0.7
1,524,594	-				-0.7
1,524,649	-				+0.2
1,524,686	-				-0.4
1,524,686	-				-0.4
1,524,706	+				-0.4
1,524,764	+		GFF1498	0.13	+0.3
1,524,764	+		GFF1498	0.13	-0.4
1,524,764	+		GFF1498	0.13	-0.2
1,524,764	+		GFF1498	0.13	-0.5
1,524,764	+		GFF1498	0.13	-0.9
1,524,764	+		GFF1498	0.13	+1.0
1,524,764	+		GFF1498	0.13	+0.7
1,524,764	+		GFF1498	0.13	-0.4
1,524,764	+		GFF1498	0.13	+0.8
1,524,764	-		GFF1498	0.13	+1.8
1,524,772	-		GFF1498	0.14	+0.3
1,524,772	-		GFF1498	0.14	-1.0
1,524,772	-		GFF1498	0.14	-0.7
1,524,772	-		GFF1498	0.14	-1.4
1,524,772	-		GFF1498	0.14	-0.6
1,524,772	-		GFF1498	0.14	-0.6
1,524,772	-		GFF1498	0.14	-0.2
1,524,772	-		GFF1498	0.14	-0.0
1,524,772	-		GFF1498	0.14	-0.8
1,524,772	-		GFF1498	0.14	-0.5
1,524,784	+		GFF1498	0.15	-2.0
1,524,784	+		GFF1498	0.15	+0.0
1,524,784	+		GFF1498	0.15	-2.1
1,524,784	+		GFF1498	0.15	-0.5
1,524,792	-		GFF1498	0.16	+0.5
1,524,792	-		GFF1498	0.16	+1.1
1,524,800	-		GFF1498	0.16	+0.1
1,524,840	+		GFF1498	0.20	+0.7
1,524,845	+		GFF1498	0.20	+0.8
1,524,857	+		GFF1498	0.21	+0.3
1,524,857	+		GFF1498	0.21	-0.6
1,524,867	+		GFF1498	0.22	-0.4
1,524,889	+		GFF1498	0.24	-1.1
1,524,966	+		GFF1498	0.31	-0.1
1,524,966	+		GFF1498	0.31	-0.6
1,524,974	-		GFF1498	0.32	-0.5
1,524,974	-		GFF1498	0.32	-0.8
1,525,003	+		GFF1498	0.34	-0.2
1,525,011	-		GFF1498	0.35	-1.5
1,525,024	+		GFF1498	0.36	+0.8
1,525,030	+		GFF1498	0.37	+0.7
1,525,032	-		GFF1498	0.37	+0.5
1,525,044	-		GFF1498	0.38	+0.1
1,525,064	-		GFF1498	0.40	-1.2
1,525,079	+		GFF1498	0.41	+1.7
1,525,079	+		GFF1498	0.41	+0.4
1,525,084	+		GFF1498	0.42	-1.2
1,525,087	-		GFF1498	0.42	+0.0
1,525,115	+		GFF1498	0.44	+1.0
1,525,123	+		GFF1498	0.45	+0.3
1,525,123	-		GFF1498	0.45	-0.5
1,525,153	+		GFF1498	0.48	-0.3
1,525,163	+		GFF1498	0.49	-1.2
1,525,163	+		GFF1498	0.49	-2.4
1,525,163	-		GFF1498	0.49	-0.2
1,525,199	+		GFF1498	0.52	-1.0
1,525,240	+		GFF1498	0.55	-0.7
1,525,250	+		GFF1498	0.56	-1.7
1,525,343	-		GFF1498	0.65	+2.5
1,525,345	-		GFF1498	0.65	-1.0
1,525,350	-		GFF1498	0.65	-0.2
1,525,359	+		GFF1498	0.66	-1.0
1,525,359	+		GFF1498	0.66	+1.3
1,525,362	-		GFF1498	0.66	-0.4
1,525,377	+		GFF1498	0.68	+0.7
1,525,402	+		GFF1498	0.70	-0.6
1,525,402	-		GFF1498	0.70	+0.3
1,525,409	-		GFF1498	0.70	+0.8
1,525,429	-		GFF1498	0.72	-1.4
1,525,429	-		GFF1498	0.72	-0.1
1,525,445	+		GFF1498	0.74	-0.1
1,525,460	-		GFF1498	0.75	-0.2
1,525,465	-		GFF1498	0.75	-0.4
1,525,531	+		GFF1498	0.81	-0.0
1,525,539	-		GFF1498	0.82	+0.4
1,525,539	-		GFF1498	0.82	-2.3
1,525,575	+		GFF1498	0.85	+0.3
1,525,588	-		GFF1498	0.86	+0.7
1,525,675	-				-0.9
1,525,701	-				+0.6
1,525,715	+				-0.4
1,525,723	-				+0.3
1,525,743	+				-0.7
1,525,746	+				-1.6
1,525,767	+				-2.1
1,525,796	-				-1.0
1,525,837	-				-1.3
1,525,839	+				-0.8
1,525,840	+				+0.3
1,525,847	-				+1.5
1,525,847	-				+0.3
1,525,890	+		GFF1499	0.11	-0.1
1,525,895	+		GFF1499	0.11	-0.2
1,525,898	-		GFF1499	0.11	+0.2
1,525,900	+		GFF1499	0.11	-0.1
1,525,900	+		GFF1499	0.11	+0.6
1,525,900	+		GFF1499	0.11	-1.3
1,525,900	+		GFF1499	0.11	+1.4
1,525,903	-		GFF1499	0.12	-0.2
1,525,908	-		GFF1499	0.12	+0.1
1,525,908	-		GFF1499	0.12	-1.4
1,525,914	-		GFF1499	0.12	+0.4
1,525,923	-		GFF1499	0.13	-0.5
1,525,926	+		GFF1499	0.13	-1.4
1,525,934	-		GFF1499	0.14	-0.3
1,525,934	-		GFF1499	0.14	+0.9
1,525,934	-		GFF1499	0.14	+0.1
1,525,934	-		GFF1499	0.14	-2.0
1,525,944	-		GFF1499	0.15	+1.0
1,525,959	+		GFF1499	0.16	-0.6
1,525,967	-		GFF1499	0.16	-0.3
1,525,967	-		GFF1499	0.16	-0.2
1,526,003	-		GFF1499	0.19	+0.3
1,526,013	+		GFF1499	0.20	+0.1
1,526,040	+		GFF1499	0.22	+1.1
1,526,040	+		GFF1499	0.22	-0.5
1,526,045	+		GFF1499	0.22	-0.7
1,526,064	-		GFF1499	0.23	-0.1
1,526,123	-		GFF1499	0.28	-1.5
1,526,128	-		GFF1499	0.28	-0.2
1,526,128	-		GFF1499	0.28	+0.5
1,526,133	+		GFF1499	0.28	-1.4
1,526,151	-		GFF1499	0.30	+0.3
1,526,171	-		GFF1499	0.31	+0.1
1,526,181	+		GFF1499	0.32	-0.7
1,526,189	-		GFF1499	0.32	-0.5
1,526,224	+		GFF1499	0.35	-0.3
1,526,230	+		GFF1499	0.35	+0.0
1,526,230	+		GFF1499	0.35	-2.3
1,526,232	-		GFF1499	0.36	+1.0
1,526,232	-		GFF1499	0.36	-1.8
1,526,232	-		GFF1499	0.36	-2.9
1,526,232	-		GFF1499	0.36	-0.1
1,526,232	-		GFF1499	0.36	-0.6
1,526,232	-		GFF1499	0.36	-0.3
1,526,235	+		GFF1499	0.36	-1.2
1,526,238	-		GFF1499	0.36	-1.6
1,526,238	-		GFF1499	0.36	-1.5
1,526,238	-		GFF1499	0.36	-1.3
1,526,262	+		GFF1499	0.38	-2.1
1,526,267	+		GFF1499	0.38	-0.6
1,526,270	-		GFF1499	0.38	-0.7
1,526,272	+		GFF1499	0.38	-0.2
1,526,274	+		GFF1499	0.39	-1.3
1,526,274	+		GFF1499	0.39	-0.8
1,526,280	-		GFF1499	0.39	-0.8
1,526,292	-		GFF1499	0.40	+1.1
1,526,425	-		GFF1499	0.50	+1.3
1,526,425	-		GFF1499	0.50	+1.4
1,526,428	-		GFF1499	0.50	+0.4
1,526,434	+		GFF1499	0.50	+0.6
1,526,447	-		GFF1499	0.51	+0.3
1,526,478	-		GFF1499	0.53	-0.7
1,526,504	+		GFF1499	0.55	-0.7
1,526,504	+		GFF1499	0.55	+0.6
1,526,513	+		GFF1499	0.56	-0.4
1,526,536	-		GFF1499	0.58	+0.5
1,526,546	+		GFF1499	0.58	+0.0
1,526,607	+		GFF1499	0.63	-0.4
1,526,611	+		GFF1499	0.63	+0.1
1,526,650	-		GFF1499	0.66	-0.5
1,526,683	+		GFF1499	0.68	-0.3
1,526,703	+		GFF1499	0.70	-1.2
1,526,704	-		GFF1499	0.70	-0.8
1,526,727	-		GFF1499	0.72	-1.4