Strain Fitness in Sphingobium sp. HT1-2 around GFF1488

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,510,930	-		GFF1486	0.15	+0.3
1,510,957	+		GFF1486	0.22	-1.6
1,510,957	+		GFF1486	0.22	-0.4
1,510,957	+		GFF1486	0.22	+1.1
1,510,965	-		GFF1486	0.24	-0.1
1,510,965	-		GFF1486	0.24	+0.0
1,510,990	+		GFF1486	0.30	+0.5
1,510,990	+		GFF1486	0.30	-1.3
1,510,990	+		GFF1486	0.30	+1.0
1,510,995	+		GFF1486	0.32	-1.3
1,510,998	-		GFF1486	0.33	+0.2
1,510,998	-		GFF1486	0.33	+0.8
1,511,007	+		GFF1486	0.35	+0.8
1,511,012	+		GFF1486	0.36	-0.1
1,511,018	-		GFF1486	0.38	+0.0
1,511,030	+		GFF1486	0.41	+1.1
1,511,062	+		GFF1486	0.49	+1.0
1,511,140	-		GFF1486	0.70	-0.3
1,511,221	+				-0.4
1,511,229	-				-0.5
1,511,229	-				-0.3
1,511,287	+				-2.4
1,511,306	+		GFF1487	0.13	+0.9
1,511,306	+		GFF1487	0.13	+0.9
1,511,306	+		GFF1487	0.13	-0.8
1,511,311	+		GFF1487	0.14	-0.4
1,511,314	-		GFF1487	0.14	+1.1
1,511,314	-		GFF1487	0.14	+1.2
1,511,314	-		GFF1487	0.14	-2.4
1,511,333	+		GFF1487	0.17	+0.1
1,511,341	-		GFF1487	0.19	-0.2
1,511,341	-		GFF1487	0.19	+0.5
1,511,355	+		GFF1487	0.21	+0.8
1,511,355	+		GFF1487	0.21	+0.3
1,511,363	-		GFF1487	0.23	+0.6
1,511,363	-		GFF1487	0.23	+0.6
1,511,363	-		GFF1487	0.23	-0.8
1,511,363	-		GFF1487	0.23	-0.7
1,511,363	-		GFF1487	0.23	-0.9
1,511,365	+		GFF1487	0.23	-0.5
1,511,371	-		GFF1487	0.24	+0.0
1,511,373	-		GFF1487	0.24	+0.5
1,511,399	+		GFF1487	0.29	-1.0
1,511,407	-		GFF1487	0.30	-0.2
1,511,407	-		GFF1487	0.30	+0.1
1,511,462	-		GFF1487	0.40	+0.8
1,511,494	+		GFF1487	0.45	-2.2
1,511,499	+		GFF1487	0.46	-0.8
1,511,580	+		GFF1487	0.60	+0.0
1,511,586	-		GFF1487	0.61	-0.5
1,511,588	-		GFF1487	0.62	-0.5
1,511,588	-		GFF1487	0.62	+0.6
1,511,591	+		GFF1487	0.62	-0.1
1,511,601	+		GFF1487	0.64	-0.3
1,511,609	-		GFF1487	0.65	-0.4
1,511,630	-		GFF1487	0.69	+0.0
1,511,650	+		GFF1487	0.72	+0.0
1,511,671	-		GFF1487	0.76	-1.1
1,511,673	+		GFF1487	0.76	-0.3
1,511,676	-		GFF1487	0.77	+0.7
1,511,676	-		GFF1487	0.77	+0.6
1,511,676	-		GFF1487	0.77	+1.1
1,511,697	+		GFF1487	0.81	+0.0
1,511,697	-		GFF1487	0.81	+1.0
1,511,712	+		GFF1487	0.83	-0.6
1,511,716	-		GFF1487	0.84	-0.4
1,511,716	-		GFF1487	0.84	-2.4
1,511,721	-		GFF1487	0.85	-0.2
1,511,783	+				+0.5
1,511,788	+				+0.4
1,511,788	+				-0.1
1,511,788	+				-0.3
1,511,788	+				-0.3
1,511,788	+				+0.7
1,511,788	+				+0.3
1,511,788	+				+0.1
1,511,788	+				+0.2
1,511,788	+				+0.6
1,511,796	-				-0.8
1,511,796	-				+0.6
1,511,801	-				-0.9
1,511,805	+				+1.1
1,511,812	-				-1.5
1,511,813	-				-0.1
1,511,822	+				+1.5
1,511,827	+				-0.2
1,511,861	-				-0.3
1,511,871	+				+0.3
1,511,871	+				-1.4
1,511,882	+				-0.5
1,511,887	+				-0.2
1,511,910	+				+0.7
1,511,912	+				-0.4
1,511,917	+				+0.2
1,511,917	+				-0.4
1,511,917	+				+0.7
1,511,925	-				-0.2
1,511,925	-				-1.1
1,511,925	-				+0.2
1,511,940	+				-0.1
1,511,945	+				-0.4
1,511,945	+				-1.0
1,511,953	-				-2.0
1,511,953	-				-2.3
1,511,953	-				-0.1
1,511,963	+				-0.3
1,511,994	-				-0.7
1,512,016	+				-0.9
1,512,024	-				-0.6
1,512,040	-				-1.2
1,512,044	+				+0.0
1,512,044	+				-0.1
1,512,047	-				-1.7
1,512,053	+				-1.1
1,512,083	+				-1.1
1,512,107	+		GFF1488	0.11	-0.3
1,512,107	+		GFF1488	0.11	-1.1
1,512,107	+		GFF1488	0.11	-0.1
1,512,107	+		GFF1488	0.11	-2.1
1,512,107	+		GFF1488	0.11	-3.5
1,512,107	+		GFF1488	0.11	-0.5
1,512,107	+		GFF1488	0.11	-1.6
1,512,115	-		GFF1488	0.12	-2.4
1,512,115	-		GFF1488	0.12	+0.7
1,512,115	-		GFF1488	0.12	+0.2
1,512,115	-		GFF1488	0.12	-1.2
1,512,115	-		GFF1488	0.12	-0.3
1,512,115	-		GFF1488	0.12	+0.4
1,512,115	-		GFF1488	0.12	+0.7
1,512,117	+		GFF1488	0.12	-2.2
1,512,125	-		GFF1488	0.12	+0.6
1,512,125	-		GFF1488	0.12	-1.3
1,512,130	+		GFF1488	0.12	-0.5
1,512,138	-		GFF1488	0.13	+0.5
1,512,168	+		GFF1488	0.14	-0.4
1,512,168	+		GFF1488	0.14	-1.2
1,512,174	-		GFF1488	0.15	-2.7
1,512,186	+		GFF1488	0.15	-0.3
1,512,231	+		GFF1488	0.18	-0.7
1,512,233	+		GFF1488	0.18	-1.3
1,512,233	+		GFF1488	0.18	-0.2
1,512,233	+		GFF1488	0.18	-0.5
1,512,238	+		GFF1488	0.18	-2.0
1,512,238	+		GFF1488	0.18	+0.3
1,512,238	+		GFF1488	0.18	-0.2
1,512,238	+		GFF1488	0.18	-0.4
1,512,238	+		GFF1488	0.18	+1.3
1,512,238	+		GFF1488	0.18	-2.1
1,512,241	-		GFF1488	0.18	-0.4
1,512,246	-		GFF1488	0.19	-2.8
1,512,246	-		GFF1488	0.19	+0.8
1,512,246	-		GFF1488	0.19	-0.1
1,512,254	+		GFF1488	0.19	+0.1
1,512,256	+		GFF1488	0.19	-0.4
1,512,256	+		GFF1488	0.19	+1.6
1,512,256	+		GFF1488	0.19	+0.3
1,512,256	+		GFF1488	0.19	+0.7
1,512,262	-		GFF1488	0.19	-1.7
1,512,262	-		GFF1488	0.19	-2.0
1,512,264	-		GFF1488	0.20	-2.3
1,512,264	-		GFF1488	0.20	-1.1
1,512,301	-		GFF1488	0.21	+0.0
1,512,301	-		GFF1488	0.21	-0.1
1,512,353	+		GFF1488	0.24	+1.3
1,512,353	+		GFF1488	0.24	-0.4
1,512,361	-		GFF1488	0.25	+0.8
1,512,361	-		GFF1488	0.25	-0.7
1,512,366	-		GFF1488	0.25	-0.7
1,512,366	-		GFF1488	0.25	-1.4
1,512,368	-		GFF1488	0.25	-1.1
1,512,375	+		GFF1488	0.25	+0.6
1,512,375	+		GFF1488	0.25	+0.9
1,512,375	+		GFF1488	0.25	-1.6
1,512,375	+		GFF1488	0.25	+0.1
1,512,383	-		GFF1488	0.26	-0.9
1,512,383	-		GFF1488	0.26	-0.6
1,512,401	+		GFF1488	0.27	+1.3
1,512,402	+		GFF1488	0.27	-0.0
1,512,411	+		GFF1488	0.27	+1.3
1,512,426	+		GFF1488	0.28	-1.8
1,512,426	+		GFF1488	0.28	-1.3
1,512,457	+		GFF1488	0.30	-0.5
1,512,475	+		GFF1488	0.31	-1.2
1,512,497	+		GFF1488	0.32	+1.3
1,512,518	-		GFF1488	0.33	-0.1
1,512,522	+		GFF1488	0.33	-1.4
1,512,531	+		GFF1488	0.34	+1.0
1,512,547	+		GFF1488	0.35	-0.9
1,512,567	+		GFF1488	0.36	+0.9
1,512,567	+		GFF1488	0.36	-0.5
1,512,567	+		GFF1488	0.36	-0.4
1,512,567	+		GFF1488	0.36	+1.0
1,512,567	+		GFF1488	0.36	+0.3
1,512,575	-		GFF1488	0.36	+1.3
1,512,575	-		GFF1488	0.36	+1.4
1,512,584	-		GFF1488	0.37	+0.4
1,512,591	+		GFF1488	0.37	+1.6
1,512,599	-		GFF1488	0.37	-1.8
1,512,638	+		GFF1488	0.39	+1.6
1,512,646	-		GFF1488	0.40	-0.0
1,512,671	+		GFF1488	0.41	-0.6
1,512,687	+		GFF1488	0.42	-0.6
1,512,687	+		GFF1488	0.42	-1.3
1,512,695	-		GFF1488	0.42	+0.6
1,512,701	-		GFF1488	0.43	-0.8
1,512,738	-		GFF1488	0.45	-0.5
1,512,748	-		GFF1488	0.45	+0.0
1,512,786	+		GFF1488	0.47	+0.3
1,512,789	-		GFF1488	0.47	-1.4
1,512,816	+		GFF1488	0.49	+1.6
1,512,816	+		GFF1488	0.49	-0.9
1,512,817	+		GFF1488	0.49	+0.1
1,512,837	+		GFF1488	0.50	-1.2
1,512,837	+		GFF1488	0.50	+1.4
1,512,850	+		GFF1488	0.51	-0.7
1,512,850	+		GFF1488	0.51	+0.1
1,512,850	+		GFF1488	0.51	+1.7
1,512,855	+		GFF1488	0.51	+0.4
1,512,858	-		GFF1488	0.51	+0.2
1,512,858	-		GFF1488	0.51	+0.5
1,512,863	-		GFF1488	0.51	-1.0
1,512,918	-		GFF1488	0.54	-0.2
1,512,936	+		GFF1488	0.55	+0.7
1,512,943	-		GFF1488	0.56	-0.5
1,512,953	-		GFF1488	0.56	-1.5
1,512,965	-		GFF1488	0.57	-0.9
1,512,969	+		GFF1488	0.57	+1.3
1,512,978	+		GFF1488	0.57	-0.3
1,512,978	+		GFF1488	0.57	+0.7
1,512,986	-		GFF1488	0.58	-1.4
1,513,097	+		GFF1488	0.64	+0.5
1,513,105	-		GFF1488	0.64	+0.6
1,513,139	-		GFF1488	0.66	+1.2
1,513,148	-		GFF1488	0.66	-0.9
1,513,155	+		GFF1488	0.67	+0.1
1,513,205	-		GFF1488	0.69	+0.4
1,513,208	+		GFF1488	0.70	+0.9
1,513,211	-		GFF1488	0.70	-1.1
1,513,211	-		GFF1488	0.70	+0.3
1,513,211	-		GFF1488	0.70	+0.2
1,513,255	+		GFF1488	0.72	+0.0
1,513,271	-		GFF1488	0.73	+0.1
1,513,271	-		GFF1488	0.73	-1.7
1,513,273	+		GFF1488	0.73	-2.2
1,513,281	-		GFF1488	0.74	-0.8
1,513,296	-		GFF1488	0.74	-2.2
1,513,304	+		GFF1488	0.75	+0.2
1,513,312	-		GFF1488	0.75	-0.4
1,513,319	+		GFF1488	0.76	-0.8
1,513,360	+		GFF1488	0.78	+1.4
1,513,368	-		GFF1488	0.78	-0.6
1,513,371	+		GFF1488	0.78	-0.8
1,513,371	+		GFF1488	0.78	-0.1
1,513,371	+		GFF1488	0.78	+0.1
1,513,371	+		GFF1488	0.78	-0.1
1,513,371	+		GFF1488	0.78	-1.6
1,513,379	-		GFF1488	0.79	-0.3
1,513,379	-		GFF1488	0.79	+0.7
1,513,379	-		GFF1488	0.79	+0.3
1,513,379	-		GFF1488	0.79	+0.7
1,513,379	-		GFF1488	0.79	-0.4
1,513,379	-		GFF1488	0.79	-0.8
1,513,379	-		GFF1488	0.79	-0.4
1,513,382	+		GFF1488	0.79	-0.5
1,513,405	-		GFF1488	0.80	+0.4
1,513,415	+		GFF1488	0.81	+0.5
1,513,458	+		GFF1488	0.83	-1.8
1,513,527	+		GFF1488	0.87	-0.4
1,513,563	-		GFF1488	0.88	-0.4
1,513,563	-		GFF1488	0.88	-1.6
1,513,579	+		GFF1488	0.89	-1.7
1,513,587	+		GFF1488	0.90	+0.8
1,513,599	-				-0.5
1,513,599	-				-0.5
1,513,601	+				-1.7
1,513,607	+				+0.8
1,513,661	+				+0.3
1,513,661	-				-0.5
1,513,669	-				-1.1
1,513,669	-				+0.4
1,513,669	-				-0.1
1,513,685	-				-0.9
1,513,708	-				+0.2
1,513,718	-				-0.3
1,513,718	-				+0.1
1,513,749	+				+0.4
1,513,764	-				+0.7
1,513,764	-				-1.2
1,513,777	-				-0.5
1,513,798	+				-0.3
1,513,803	+				-0.1
1,513,806	-				-0.3
1,513,838	+				-0.6
1,513,846	-				-1.1
1,513,847	+				-2.7
1,513,855	-				+0.8
1,513,969	-				-1.3
1,513,971	+				-0.1
1,513,978	-				-1.2
1,513,985	-		GFF1489	0.10	-1.8
1,513,995	+		GFF1489	0.11	-1.2
1,514,003	-		GFF1489	0.12	-0.3
1,514,021	-		GFF1489	0.15	-0.4
1,514,021	-		GFF1489	0.15	-0.4
1,514,043	+		GFF1489	0.17	+0.8
1,514,051	-		GFF1489	0.18	+0.9
1,514,079	-		GFF1489	0.22	-0.2
1,514,091	+		GFF1489	0.23	+1.2
1,514,091	+		GFF1489	0.23	+0.3
1,514,091	+		GFF1489	0.23	-0.3
1,514,091	+		GFF1489	0.23	-1.3
1,514,091	+		GFF1489	0.23	-0.3
1,514,094	-		GFF1489	0.24	-2.1
1,514,094	-		GFF1489	0.24	+0.5
1,514,094	-		GFF1489	0.24	+0.8
1,514,096	+		GFF1489	0.24	+0.0
1,514,096	+		GFF1489	0.24	-0.5
1,514,096	+		GFF1489	0.24	-1.4
1,514,096	+		GFF1489	0.24	+0.8
1,514,096	+		GFF1489	0.24	+0.6
1,514,099	-		GFF1489	0.24	-0.6
1,514,104	-		GFF1489	0.25	-0.4
1,514,104	-		GFF1489	0.25	-0.3
1,514,115	+		GFF1489	0.26	+0.3
1,514,130	-		GFF1489	0.28	-1.1
1,514,130	-		GFF1489	0.28	+0.3
1,514,136	-		GFF1489	0.29	-0.4
1,514,150	-		GFF1489	0.30	-0.9
1,514,179	+		GFF1489	0.34	+1.5
1,514,186	+		GFF1489	0.35	-0.8
1,514,186	+		GFF1489	0.35	+0.7
1,514,197	-		GFF1489	0.36	+0.4
1,514,201	-		GFF1489	0.37	-0.3
1,514,203	+		GFF1489	0.37	+0.1
1,514,211	-		GFF1489	0.38	+0.0
1,514,235	-		GFF1489	0.41	-1.1
1,514,239	-		GFF1489	0.41	+1.2
1,514,240	-		GFF1489	0.41	-0.9
1,514,272	+		GFF1489	0.45	+0.3
1,514,299	-		GFF1489	0.49	+0.8
1,514,306	-		GFF1489	0.49	-0.4
1,514,308	+		GFF1489	0.50	-0.7
1,514,310	-		GFF1489	0.50	-0.7
1,514,311	-		GFF1489	0.50	-1.1
1,514,358	+		GFF1489	0.56	-0.9
1,514,412	+		GFF1489	0.62	-0.4
1,514,426	+		GFF1489	0.64	+0.6
1,514,426	-		GFF1489	0.64	+0.6
1,514,468	-		GFF1489	0.69	+0.2
1,514,470	+		GFF1489	0.69	+1.1
1,514,476	+		GFF1489	0.70	+0.6
1,514,481	+		GFF1489	0.71	+1.2
1,514,537	+		GFF1489	0.78	+0.5
1,514,543	-		GFF1489	0.78	-0.1
1,514,545	-		GFF1489	0.79	-1.4
1,514,575	+		GFF1489	0.82	+0.3
1,514,599	+		GFF1489	0.85	-1.6
1,514,599	+		GFF1489	0.85	-1.2
1,514,616	+		GFF1489	0.87	+1.4
1,514,618	+		GFF1489	0.88	+1.1
1,514,635	+		GFF1489	0.90	-0.1
1,514,635	-		GFF1489	0.90	+0.4
1,514,636	-		GFF1489	0.90	-0.5
1,514,636	-		GFF1489	0.90	+0.3
1,514,659	+				+0.2
1,514,665	+				-0.6
1,514,670	+				+1.0
1,514,670	+				-2.0
1,514,678	-				+0.5
1,514,678	-				-1.1
1,514,714	+				-1.0
1,514,722	-				-0.1
1,514,734	-				-1.1
1,514,769	-				-2.4
1,514,770	+				-1.8
1,514,770	+				+0.3
1,514,778	-				-1.4
1,514,778	-				+0.7