Strain Fitness in Sphingobium sp. HT1-2 around GFF1479

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,504,134	+		GFF1477	0.78	-0.1
1,504,134	+		GFF1477	0.78	-0.9
1,504,142	-		GFF1477	0.79	-1.1
1,504,165	+		GFF1477	0.84	-0.8
1,504,165	+		GFF1477	0.84	-2.0
1,504,165	+		GFF1477	0.84	+0.8
1,504,184	+		GFF1477	0.87	-2.6
1,504,194	+		GFF1477	0.89	+0.1
1,504,194	+		GFF1477	0.89	-0.6
1,504,194	+		GFF1477	0.89	-0.3
1,504,194	+		GFF1477	0.89	-1.0
1,504,194	+		GFF1477	0.89	+0.7
1,504,202	-				-0.7
1,504,202	-				-0.3
1,504,202	-				-0.6
1,504,202	-				-3.0
1,504,202	-				-1.1
1,504,202	-				-0.3
1,504,244	-				-1.0
1,504,248	-				+1.3
1,504,249	+				-1.5
1,504,251	+				-1.0
1,504,257	-				-0.7
1,504,297	+				-0.5
1,504,305	-				-1.5
1,504,313	+				+0.0
1,504,336	+				-0.5
1,504,336	+				-0.2
1,504,344	-		GFF1478	0.10	-0.2
1,504,344	-		GFF1478	0.10	-0.9
1,504,346	+		GFF1478	0.10	-0.7
1,504,346	+		GFF1478	0.10	-0.5
1,504,346	+		GFF1478	0.10	-1.4
1,504,354	-		GFF1478	0.12	+0.1
1,504,371	-		GFF1478	0.14	+0.9
1,504,371	-		GFF1478	0.14	-0.7
1,504,396	-		GFF1478	0.17	+0.4
1,504,424	+		GFF1478	0.21	-0.2
1,504,425	+		GFF1478	0.21	+0.2
1,504,425	+		GFF1478	0.21	-0.5
1,504,431	+		GFF1478	0.22	-0.9
1,504,432	-		GFF1478	0.22	-1.1
1,504,432	-		GFF1478	0.22	+0.9
1,504,432	-		GFF1478	0.22	-0.1
1,504,433	-		GFF1478	0.22	-1.6
1,504,433	-		GFF1478	0.22	-1.2
1,504,433	-		GFF1478	0.22	-0.2
1,504,433	-		GFF1478	0.22	+0.6
1,504,474	+		GFF1478	0.28	+0.3
1,504,474	+		GFF1478	0.28	+1.3
1,504,480	+		GFF1478	0.28	-0.6
1,504,480	+		GFF1478	0.28	+0.7
1,504,480	+		GFF1478	0.28	-1.4
1,504,482	+		GFF1478	0.29	-0.7
1,504,482	+		GFF1478	0.29	-0.8
1,504,482	+		GFF1478	0.29	+2.5
1,504,482	+		GFF1478	0.29	-0.5
1,504,482	+		GFF1478	0.29	+1.1
1,504,482	-		GFF1478	0.29	+1.6
1,504,488	-		GFF1478	0.29	-1.0
1,504,488	-		GFF1478	0.29	-0.5
1,504,488	-		GFF1478	0.29	+0.6
1,504,490	-		GFF1478	0.30	-1.5
1,504,490	-		GFF1478	0.30	-0.1
1,504,490	-		GFF1478	0.30	-0.7
1,504,490	-		GFF1478	0.30	-0.8
1,504,492	+		GFF1478	0.30	-0.4
1,504,497	+		GFF1478	0.31	-2.4
1,504,497	+		GFF1478	0.31	+0.6
1,504,500	-		GFF1478	0.31	-1.1
1,504,500	-		GFF1478	0.31	+0.9
1,504,502	+		GFF1478	0.31	-1.5
1,504,505	-		GFF1478	0.32	-0.4
1,504,505	-		GFF1478	0.32	-0.7
1,504,515	+		GFF1478	0.33	+0.7
1,504,515	+		GFF1478	0.33	+0.0
1,504,515	+		GFF1478	0.33	-0.1
1,504,523	-		GFF1478	0.34	+0.4
1,504,523	-		GFF1478	0.34	-0.6
1,504,523	-		GFF1478	0.34	-0.5
1,504,523	-		GFF1478	0.34	-0.6
1,504,523	-		GFF1478	0.34	-0.5
1,504,539	+		GFF1478	0.36	+0.2
1,504,569	+		GFF1478	0.40	-0.9
1,504,569	+		GFF1478	0.40	+0.5
1,504,588	+		GFF1478	0.43	-1.2
1,504,588	+		GFF1478	0.43	-1.4
1,504,598	-		GFF1478	0.44	-1.1
1,504,609	-		GFF1478	0.46	+0.5
1,504,635	+		GFF1478	0.49	-0.1
1,504,665	+		GFF1478	0.53	-1.1
1,504,666	-		GFF1478	0.53	-1.7
1,504,666	-		GFF1478	0.53	+1.0
1,504,670	+		GFF1478	0.54	+1.0
1,504,670	+		GFF1478	0.54	-1.5
1,504,678	-		GFF1478	0.55	+0.0
1,504,678	-		GFF1478	0.55	-0.9
1,504,678	-		GFF1478	0.55	-1.3
1,504,678	-		GFF1478	0.55	+1.1
1,504,725	+		GFF1478	0.61	+0.2
1,504,725	+		GFF1478	0.61	-0.2
1,504,731	-		GFF1478	0.62	-2.3
1,504,733	-		GFF1478	0.62	-0.5
1,504,760	-		GFF1478	0.66	+1.0
1,504,789	-		GFF1478	0.70	+0.8
1,504,789	-		GFF1478	0.70	-3.0
1,504,806	+		GFF1478	0.72	-0.2
1,504,850	+		GFF1478	0.78	+1.4
1,504,863	+		GFF1478	0.80	-0.3
1,504,863	+		GFF1478	0.80	+0.3
1,504,863	+		GFF1478	0.80	+0.1
1,504,863	+		GFF1478	0.80	+0.3
1,504,863	+		GFF1478	0.80	+0.5
1,504,863	+		GFF1478	0.80	-0.6
1,504,868	+		GFF1478	0.80	-0.4
1,504,868	+		GFF1478	0.80	+0.0
1,504,871	-		GFF1478	0.81	-0.9
1,504,871	-		GFF1478	0.81	+1.5
1,504,871	-		GFF1478	0.81	+0.6
1,504,888	+		GFF1478	0.83	+0.8
1,504,896	-		GFF1478	0.84	-0.5
1,504,917	+		GFF1478	0.87	-1.8
1,504,918	+		GFF1478	0.87	-0.2
1,504,918	+		GFF1478	0.87	-2.1
1,504,918	+		GFF1478	0.87	-0.7
1,504,959	-				-0.1
1,504,979	+				-0.3
1,504,992	+				+0.4
1,505,006	-				-0.1
1,505,144	+				-0.4
1,505,144	+				+1.2
1,505,172	+				+0.0
1,505,173	-				+0.3
1,505,203	-		GFF1479	0.10	+0.1
1,505,215	-		GFF1479	0.12	+1.0
1,505,226	+		GFF1479	0.13	+0.2
1,505,226	+		GFF1479	0.13	+0.9
1,505,226	-		GFF1479	0.13	-1.2
1,505,241	+		GFF1479	0.16	-2.4
1,505,249	-		GFF1479	0.17	-1.2
1,505,261	+		GFF1479	0.18	-2.3
1,505,276	+		GFF1479	0.21	-1.4
1,505,284	-		GFF1479	0.22	-1.3
1,505,291	+		GFF1479	0.23	-1.6
1,505,299	-		GFF1479	0.24	-2.1
1,505,306	-		GFF1479	0.25	-0.2
1,505,312	+		GFF1479	0.26	-0.4
1,505,320	-		GFF1479	0.27	-0.9
1,505,320	-		GFF1479	0.27	-0.5
1,505,328	+		GFF1479	0.28	-0.1
1,505,333	+		GFF1479	0.29	+0.6
1,505,335	+		GFF1479	0.29	-0.6
1,505,335	+		GFF1479	0.29	+0.5
1,505,335	-		GFF1479	0.29	-0.1
1,505,341	-		GFF1479	0.30	-1.8
1,505,343	-		GFF1479	0.30	-1.0
1,505,345	-		GFF1479	0.31	-1.1
1,505,357	+		GFF1479	0.32	+0.3
1,505,357	+		GFF1479	0.32	-1.3
1,505,357	+		GFF1479	0.32	-1.7
1,505,357	+		GFF1479	0.32	-1.8
1,505,357	+		GFF1479	0.32	-1.6
1,505,357	+		GFF1479	0.32	-0.8
1,505,357	+		GFF1479	0.32	+0.5
1,505,357	+		GFF1479	0.32	-0.7
1,505,362	+		GFF1479	0.33	-1.0
1,505,365	-		GFF1479	0.34	-1.4
1,505,365	-		GFF1479	0.34	-0.5
1,505,365	-		GFF1479	0.34	-0.4
1,505,365	-		GFF1479	0.34	+0.1
1,505,365	-		GFF1479	0.34	+0.4
1,505,365	-		GFF1479	0.34	-1.1
1,505,377	-		GFF1479	0.35	+0.0
1,505,386	+		GFF1479	0.37	-1.0
1,505,412	-		GFF1479	0.40	+0.2
1,505,412	-		GFF1479	0.40	-1.2
1,505,412	-		GFF1479	0.40	-1.3
1,505,424	+		GFF1479	0.42	-0.1
1,505,424	+		GFF1479	0.42	+1.2
1,505,424	+		GFF1479	0.42	-1.1
1,505,424	+		GFF1479	0.42	-0.9
1,505,424	+		GFF1479	0.42	-1.5
1,505,424	+		GFF1479	0.42	-0.9
1,505,424	+		GFF1479	0.42	+0.1
1,505,424	+		GFF1479	0.42	-1.3
1,505,424	+		GFF1479	0.42	+1.3
1,505,424	+		GFF1479	0.42	-1.2
1,505,424	+		GFF1479	0.42	-1.9
1,505,424	+		GFF1479	0.42	-1.0
1,505,432	-		GFF1479	0.43	-0.4
1,505,432	-		GFF1479	0.43	-1.2
1,505,432	-		GFF1479	0.43	-1.1
1,505,432	-		GFF1479	0.43	-0.7
1,505,432	-		GFF1479	0.43	-0.2
1,505,432	-		GFF1479	0.43	+1.1
1,505,432	-		GFF1479	0.43	-0.9
1,505,432	-		GFF1479	0.43	+0.9
1,505,432	-		GFF1479	0.43	-2.1
1,505,432	-		GFF1479	0.43	+0.5
1,505,432	-		GFF1479	0.43	+0.3
1,505,438	+		GFF1479	0.44	-1.6
1,505,438	+		GFF1479	0.44	+0.0
1,505,451	+		GFF1479	0.46	+0.8
1,505,492	+		GFF1479	0.52	-1.1
1,505,495	-		GFF1479	0.53	+0.1
1,505,511	+		GFF1479	0.55	-0.3
1,505,519	-		GFF1479	0.56	+0.4
1,505,519	-		GFF1479	0.56	-1.4
1,505,526	+		GFF1479	0.57	-0.9
1,505,551	-		GFF1479	0.61	-0.5
1,505,570	+		GFF1479	0.63	-0.5
1,505,582	-		GFF1479	0.65	+0.0
1,505,600	+		GFF1479	0.68	+0.4
1,505,608	-		GFF1479	0.69	+0.6
1,505,617	+		GFF1479	0.70	-0.5
1,505,639	+		GFF1479	0.74	-1.6
1,505,639	+		GFF1479	0.74	-0.1
1,505,660	+		GFF1479	0.77	-1.8
1,505,686	+		GFF1479	0.80	+0.2
1,505,686	+		GFF1479	0.80	+0.1
1,505,686	+		GFF1479	0.80	-0.5
1,505,686	+		GFF1479	0.80	+0.8
1,505,686	+		GFF1479	0.80	+0.1
1,505,686	+		GFF1479	0.80	-2.0
1,505,686	+		GFF1479	0.80	+0.1
1,505,686	+		GFF1479	0.80	-1.1
1,505,686	+		GFF1479	0.80	+1.3
1,505,686	+		GFF1479	0.80	-0.2
1,505,686	+		GFF1479	0.80	-0.3
1,505,686	+		GFF1479	0.80	-0.1
1,505,686	+		GFF1479	0.80	+0.1
1,505,686	+		GFF1479	0.80	-0.2
1,505,686	+		GFF1479	0.80	-0.8
1,505,686	+		GFF1479	0.80	-0.7
1,505,686	+		GFF1479	0.80	+0.5
1,505,686	+		GFF1479	0.80	-0.4
1,505,686	+		GFF1479	0.80	-1.3
1,505,686	+		GFF1479	0.80	-1.6
1,505,686	+		GFF1479	0.80	+0.8
1,505,691	+		GFF1479	0.81	+0.6
1,505,694	-		GFF1479	0.82	+1.0
1,505,694	-		GFF1479	0.82	-0.3
1,505,694	-		GFF1479	0.82	+0.9
1,505,694	-		GFF1479	0.82	+0.9
1,505,694	-		GFF1479	0.82	+0.6
1,505,694	-		GFF1479	0.82	+1.1
1,505,694	-		GFF1479	0.82	-1.2
1,505,694	-		GFF1479	0.82	-0.8
1,505,694	-		GFF1479	0.82	-0.3
1,505,694	-		GFF1479	0.82	+1.1
1,505,694	-		GFF1479	0.82	-1.3
1,505,694	-		GFF1479	0.82	-1.0
1,505,694	-		GFF1479	0.82	+0.2
1,505,694	-		GFF1479	0.82	+0.1
1,505,694	-		GFF1479	0.82	-0.4
1,505,694	-		GFF1479	0.82	-0.6
1,505,694	-		GFF1479	0.82	-0.4
1,505,694	-		GFF1479	0.82	-0.3
1,505,694	-		GFF1479	0.82	+1.2
1,505,694	-		GFF1479	0.82	-1.9
1,505,694	-		GFF1479	0.82	-0.5
1,505,694	-		GFF1479	0.82	+1.9
1,505,694	-		GFF1479	0.82	+0.6
1,505,696	+		GFF1479	0.82	-0.8
1,505,708	+		GFF1479	0.84	+0.5
1,505,708	+		GFF1479	0.84	-0.5
1,505,709	-		GFF1479	0.84	-1.9
1,505,709	-		GFF1479	0.84	+0.5
1,505,716	-		GFF1479	0.85	-1.0
1,505,739	-		GFF1479	0.88	-2.5
1,505,739	-		GFF1479	0.88	+0.2
1,505,739	-		GFF1479	0.88	+1.6
1,505,795	-				+0.2
1,505,795	-				+0.5
1,505,795	-				-0.6
1,505,808	+				+0.6
1,505,815	+				-1.3
1,505,819	+				-0.3
1,505,823	-				+0.5
1,505,851	-				+0.2
1,505,857	+				+0.6
1,505,859	+				-0.7
1,505,865	-				+0.7
1,505,867	+				-0.4
1,505,867	+				-0.2
1,505,867	-				-1.5
1,505,867	-				-0.7
1,505,875	+				+0.2
1,505,875	-				-0.4
1,505,875	-				-0.1
1,505,883	-				+0.4
1,505,885	+				+0.6
1,505,900	+				-2.3
1,505,900	+				-3.3
1,505,900	+				-2.2
1,505,900	+				-0.2
1,505,900	+				-0.9
1,505,900	+				-0.9
1,505,900	+				-1.3
1,505,900	+				-1.0
1,505,905	+				-2.3
1,505,905	+				+0.2
1,505,905	+				+0.5
1,505,907	-				+0.3
1,505,908	-				+0.6
1,505,908	-				+0.3
1,505,908	-				-0.3
1,505,908	-				+0.1
1,505,908	-				-1.7
1,505,908	-				+0.8
1,505,910	+				-0.3
1,505,923	-		GFF1480	0.11	-0.5
1,505,929	+		GFF1480	0.12	+0.9
1,505,946	+		GFF1480	0.13	-1.2
1,505,951	+		GFF1480	0.14	+0.4
1,505,966	+		GFF1480	0.16	-0.6
1,506,004	+		GFF1480	0.19	-1.2
1,506,004	+		GFF1480	0.19	-0.0
1,506,012	-		GFF1480	0.20	+0.8
1,506,022	-		GFF1480	0.21	-1.6
1,506,060	+		GFF1480	0.25	-0.3
1,506,073	+		GFF1480	0.27	+0.0
1,506,086	-		GFF1480	0.28	-1.1
1,506,086	-		GFF1480	0.28	+0.1
1,506,086	-		GFF1480	0.28	-0.6
1,506,100	-		GFF1480	0.29	-1.1
1,506,100	-		GFF1480	0.29	+0.7
1,506,115	+		GFF1480	0.31	+0.4
1,506,120	+		GFF1480	0.32	-1.1
1,506,120	+		GFF1480	0.32	-1.0
1,506,128	-		GFF1480	0.32	-1.5
1,506,160	-		GFF1480	0.36	+0.2
1,506,174	+		GFF1480	0.37	-0.0
1,506,174	+		GFF1480	0.37	-1.3
1,506,177	-		GFF1480	0.38	+0.1
1,506,177	-		GFF1480	0.38	+1.7
1,506,179	+		GFF1480	0.38	-0.3
1,506,183	+		GFF1480	0.38	-1.2
1,506,192	-		GFF1480	0.39	-0.5
1,506,194	+		GFF1480	0.39	+0.1
1,506,197	-		GFF1480	0.40	+0.7
1,506,199	+		GFF1480	0.40	-0.4
1,506,199	+		GFF1480	0.40	-1.0
1,506,199	+		GFF1480	0.40	-1.4
1,506,199	+		GFF1480	0.40	+0.1
1,506,199	+		GFF1480	0.40	-0.6
1,506,199	+		GFF1480	0.40	-0.9
1,506,199	+		GFF1480	0.40	-0.2
1,506,199	+		GFF1480	0.40	+0.9
1,506,199	+		GFF1480	0.40	-1.2
1,506,199	+		GFF1480	0.40	-0.2
1,506,202	-		GFF1480	0.40	-2.7
1,506,202	-		GFF1480	0.40	-1.2
1,506,204	+		GFF1480	0.40	-0.2
1,506,207	-		GFF1480	0.41	-0.7
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1,506,272	-		GFF1480	0.47	+0.6
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1,506,310	-		GFF1480	0.51	-1.9
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1,506,357	-		GFF1480	0.56	-2.5
1,506,357	-		GFF1480	0.56	-0.8
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1,506,385	-		GFF1480	0.59	-0.9
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1,506,396	-		GFF1480	0.60	-0.7
1,506,398	-		GFF1480	0.61	-1.8
1,506,405	-		GFF1480	0.61	-0.1
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1,506,416	+		GFF1480	0.62	-1.3
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1,506,531	+		GFF1480	0.74	-0.6
1,506,538	-		GFF1480	0.75	-2.8
1,506,541	+		GFF1480	0.75	-0.2
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1,506,571	-		GFF1480	0.79	-1.1
1,506,576	+		GFF1480	0.79	-2.3
1,506,578	+		GFF1480	0.79	-1.7
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1,506,586	-		GFF1480	0.80	-1.6
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1,506,595	+		GFF1480	0.81	-2.4
1,506,601	+		GFF1480	0.82	+0.1
1,506,607	+		GFF1480	0.82	-2.3
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1,506,629	+		GFF1480	0.85	-0.7
1,506,634	+		GFF1480	0.85	-0.2
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1,506,642	+		GFF1480	0.86	-0.8
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1,506,647	-		GFF1480	0.86	-0.7
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1,506,650	-		GFF1480	0.87	-1.4
1,506,662	-		GFF1480	0.88	-0.1
1,506,669	+		GFF1480	0.89	-2.7
1,506,677	-		GFF1480	0.90	-1.0
1,506,678	-		GFF1480	0.90	-0.2
1,506,681	+				-1.4
1,506,697	-				-1.4
1,506,718	+				-1.2
1,506,718	+				+0.3
1,506,737	-				-0.9
1,506,763	+				-0.2
1,506,779	+				+0.4
1,506,779	+				+1.5
1,506,779	+				-0.0
1,506,779	-				+0.2
1,506,786	+				-0.5
1,506,787	-				+0.4
1,506,791	+				-0.8
1,506,791	+				-2.3
1,506,795	-				-1.5
1,506,799	-				+0.2
1,506,806	+				+1.0