Strain Fitness in Sphingobium sp. HT1-2 around GFF1478

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,503,290	+		GFF1476	0.63	-1.0
1,503,297	+		GFF1476	0.63	-1.0
1,503,312	-		GFF1476	0.65	-1.2
1,503,332	+		GFF1476	0.67	-0.6
1,503,340	-		GFF1476	0.68	-1.0
1,503,402	-		GFF1476	0.76	-0.5
1,503,402	-		GFF1476	0.76	-0.8
1,503,402	-		GFF1476	0.76	+0.5
1,503,402	-		GFF1476	0.76	-1.9
1,503,414	+		GFF1476	0.77	-2.6
1,503,421	-		GFF1476	0.78	+2.1
1,503,464	-		GFF1476	0.83	-0.6
1,503,464	-		GFF1476	0.83	+0.1
1,503,469	+		GFF1476	0.83	-0.4
1,503,469	+		GFF1476	0.83	-0.3
1,503,470	-		GFF1476	0.84	+0.7
1,503,477	+		GFF1476	0.84	-0.9
1,503,477	-		GFF1476	0.84	+0.3
1,503,484	-		GFF1476	0.85	-1.4
1,503,493	+		GFF1476	0.86	-0.7
1,503,496	-		GFF1476	0.87	-0.3
1,503,501	-		GFF1476	0.87	-2.6
1,503,529	+				+0.3
1,503,530	-				-1.4
1,503,530	-				-0.7
1,503,539	+				-0.4
1,503,539	+				+0.9
1,503,542	+				+2.1
1,503,542	+				-0.2
1,503,542	-				-0.2
1,503,547	-				-1.1
1,503,549	-				+2.0
1,503,549	-				-1.3
1,503,560	-				-0.2
1,503,565	-				-1.4
1,503,565	-				-0.9
1,503,591	-				+0.9
1,503,600	+				+1.0
1,503,608	-				-1.2
1,503,631	+				-1.4
1,503,633	-				+1.5
1,503,639	-				-1.3
1,503,666	-				-0.8
1,503,682	-				-0.3
1,503,693	+				-2.5
1,503,733	-				-0.7
1,503,740	-				+0.3
1,503,742	+				-1.8
1,503,742	+				-1.8
1,503,750	-				-2.3
1,503,758	+		GFF1477	0.10	+0.6
1,503,788	+		GFF1477	0.16	+0.1
1,503,788	+		GFF1477	0.16	-0.6
1,503,788	+		GFF1477	0.16	-1.4
1,503,802	+		GFF1477	0.18	-0.9
1,503,802	+		GFF1477	0.18	-0.1
1,503,824	+		GFF1477	0.22	-2.3
1,503,826	+		GFF1477	0.23	-2.1
1,503,834	-		GFF1477	0.24	+0.6
1,503,834	-		GFF1477	0.24	-0.3
1,503,842	-		GFF1477	0.25	-0.5
1,503,874	+		GFF1477	0.31	+0.9
1,503,970	-		GFF1477	0.48	+0.3
1,503,972	+		GFF1477	0.49	-0.1
1,503,980	-		GFF1477	0.50	-0.5
1,503,980	-		GFF1477	0.50	+0.0
1,503,980	-		GFF1477	0.50	-2.5
1,503,980	-		GFF1477	0.50	-1.3
1,503,992	-		GFF1477	0.52	+0.1
1,503,998	+		GFF1477	0.54	-2.6
1,503,998	+		GFF1477	0.54	+0.7
1,503,998	+		GFF1477	0.54	-0.4
1,503,998	+		GFF1477	0.54	-0.6
1,504,003	+		GFF1477	0.54	-2.5
1,504,003	+		GFF1477	0.54	+0.1
1,504,003	+		GFF1477	0.54	-0.5
1,504,003	+		GFF1477	0.54	+0.5
1,504,006	-		GFF1477	0.55	-2.0
1,504,006	-		GFF1477	0.55	-2.9
1,504,006	-		GFF1477	0.55	-1.4
1,504,006	-		GFF1477	0.55	-1.3
1,504,011	-		GFF1477	0.56	-0.1
1,504,011	-		GFF1477	0.56	+0.3
1,504,011	-		GFF1477	0.56	+0.6
1,504,020	+		GFF1477	0.57	-1.4
1,504,020	+		GFF1477	0.57	+0.3
1,504,028	-		GFF1477	0.59	+0.5
1,504,066	+		GFF1477	0.66	-0.8
1,504,066	+		GFF1477	0.66	-0.8
1,504,074	-		GFF1477	0.67	-2.0
1,504,081	-		GFF1477	0.68	-2.5
1,504,100	-		GFF1477	0.72	-1.3
1,504,109	+		GFF1477	0.74	+0.1
1,504,117	-		GFF1477	0.75	-1.3
1,504,119	+		GFF1477	0.75	-2.5
1,504,122	-		GFF1477	0.76	-0.1
1,504,127	-		GFF1477	0.77	-0.3
1,504,134	+		GFF1477	0.78	-0.1
1,504,134	+		GFF1477	0.78	-0.9
1,504,142	-		GFF1477	0.79	-1.1
1,504,165	+		GFF1477	0.84	-0.8
1,504,165	+		GFF1477	0.84	-2.0
1,504,165	+		GFF1477	0.84	+0.8
1,504,184	+		GFF1477	0.87	-2.6
1,504,194	+		GFF1477	0.89	+0.1
1,504,194	+		GFF1477	0.89	-0.6
1,504,194	+		GFF1477	0.89	-0.3
1,504,194	+		GFF1477	0.89	-1.0
1,504,194	+		GFF1477	0.89	+0.7
1,504,202	-				-0.7
1,504,202	-				-0.3
1,504,202	-				-0.6
1,504,202	-				-3.0
1,504,202	-				-1.1
1,504,202	-				-0.3
1,504,244	-				-1.0
1,504,248	-				+1.3
1,504,249	+				-1.5
1,504,251	+				-1.0
1,504,257	-				-0.7
1,504,297	+				-0.5
1,504,305	-				-1.5
1,504,313	+				+0.0
1,504,336	+				-0.5
1,504,336	+				-0.2
1,504,344	-		GFF1478	0.10	-0.2
1,504,344	-		GFF1478	0.10	-0.9
1,504,346	+		GFF1478	0.10	-0.7
1,504,346	+		GFF1478	0.10	-0.5
1,504,346	+		GFF1478	0.10	-1.4
1,504,354	-		GFF1478	0.12	+0.1
1,504,371	-		GFF1478	0.14	+0.9
1,504,371	-		GFF1478	0.14	-0.7
1,504,396	-		GFF1478	0.17	+0.4
1,504,424	+		GFF1478	0.21	-0.2
1,504,425	+		GFF1478	0.21	+0.2
1,504,425	+		GFF1478	0.21	-0.5
1,504,431	+		GFF1478	0.22	-0.9
1,504,432	-		GFF1478	0.22	-1.1
1,504,432	-		GFF1478	0.22	+0.9
1,504,432	-		GFF1478	0.22	-0.1
1,504,433	-		GFF1478	0.22	-1.6
1,504,433	-		GFF1478	0.22	-1.2
1,504,433	-		GFF1478	0.22	-0.2
1,504,433	-		GFF1478	0.22	+0.6
1,504,474	+		GFF1478	0.28	+0.3
1,504,474	+		GFF1478	0.28	+1.3
1,504,480	+		GFF1478	0.28	-0.6
1,504,480	+		GFF1478	0.28	+0.7
1,504,480	+		GFF1478	0.28	-1.4
1,504,482	+		GFF1478	0.29	-0.7
1,504,482	+		GFF1478	0.29	-0.8
1,504,482	+		GFF1478	0.29	+2.5
1,504,482	+		GFF1478	0.29	-0.5
1,504,482	+		GFF1478	0.29	+1.1
1,504,482	-		GFF1478	0.29	+1.6
1,504,488	-		GFF1478	0.29	-1.0
1,504,488	-		GFF1478	0.29	-0.5
1,504,488	-		GFF1478	0.29	+0.6
1,504,490	-		GFF1478	0.30	-1.5
1,504,490	-		GFF1478	0.30	-0.1
1,504,490	-		GFF1478	0.30	-0.7
1,504,490	-		GFF1478	0.30	-0.8
1,504,492	+		GFF1478	0.30	-0.4
1,504,497	+		GFF1478	0.31	-2.4
1,504,497	+		GFF1478	0.31	+0.6
1,504,500	-		GFF1478	0.31	-1.1
1,504,500	-		GFF1478	0.31	+0.9
1,504,502	+		GFF1478	0.31	-1.5
1,504,505	-		GFF1478	0.32	-0.4
1,504,505	-		GFF1478	0.32	-0.7
1,504,515	+		GFF1478	0.33	+0.7
1,504,515	+		GFF1478	0.33	+0.0
1,504,515	+		GFF1478	0.33	-0.1
1,504,523	-		GFF1478	0.34	+0.4
1,504,523	-		GFF1478	0.34	-0.6
1,504,523	-		GFF1478	0.34	-0.5
1,504,523	-		GFF1478	0.34	-0.6
1,504,523	-		GFF1478	0.34	-0.5
1,504,539	+		GFF1478	0.36	+0.2
1,504,569	+		GFF1478	0.40	-0.9
1,504,569	+		GFF1478	0.40	+0.5
1,504,588	+		GFF1478	0.43	-1.2
1,504,588	+		GFF1478	0.43	-1.4
1,504,598	-		GFF1478	0.44	-1.1
1,504,609	-		GFF1478	0.46	+0.5
1,504,635	+		GFF1478	0.49	-0.1
1,504,665	+		GFF1478	0.53	-1.1
1,504,666	-		GFF1478	0.53	-1.7
1,504,666	-		GFF1478	0.53	+1.0
1,504,670	+		GFF1478	0.54	+1.0
1,504,670	+		GFF1478	0.54	-1.5
1,504,678	-		GFF1478	0.55	+0.0
1,504,678	-		GFF1478	0.55	-0.9
1,504,678	-		GFF1478	0.55	-1.3
1,504,678	-		GFF1478	0.55	+1.1
1,504,725	+		GFF1478	0.61	+0.2
1,504,725	+		GFF1478	0.61	-0.2
1,504,731	-		GFF1478	0.62	-2.3
1,504,733	-		GFF1478	0.62	-0.5
1,504,760	-		GFF1478	0.66	+1.0
1,504,789	-		GFF1478	0.70	+0.8
1,504,789	-		GFF1478	0.70	-3.0
1,504,806	+		GFF1478	0.72	-0.2
1,504,850	+		GFF1478	0.78	+1.4
1,504,863	+		GFF1478	0.80	-0.3
1,504,863	+		GFF1478	0.80	+0.3
1,504,863	+		GFF1478	0.80	+0.1
1,504,863	+		GFF1478	0.80	+0.3
1,504,863	+		GFF1478	0.80	+0.5
1,504,863	+		GFF1478	0.80	-0.6
1,504,868	+		GFF1478	0.80	-0.4
1,504,868	+		GFF1478	0.80	+0.0
1,504,871	-		GFF1478	0.81	-0.9
1,504,871	-		GFF1478	0.81	+1.5
1,504,871	-		GFF1478	0.81	+0.6
1,504,888	+		GFF1478	0.83	+0.8
1,504,896	-		GFF1478	0.84	-0.5
1,504,917	+		GFF1478	0.87	-1.8
1,504,918	+		GFF1478	0.87	-0.2
1,504,918	+		GFF1478	0.87	-2.1
1,504,918	+		GFF1478	0.87	-0.7
1,504,959	-				-0.1
1,504,979	+				-0.3
1,504,992	+				+0.4
1,505,006	-				-0.1
1,505,144	+				-0.4
1,505,144	+				+1.2
1,505,172	+				+0.0
1,505,173	-				+0.3
1,505,203	-		GFF1479	0.10	+0.1
1,505,215	-		GFF1479	0.12	+1.0
1,505,226	+		GFF1479	0.13	+0.2
1,505,226	+		GFF1479	0.13	+0.9
1,505,226	-		GFF1479	0.13	-1.2
1,505,241	+		GFF1479	0.16	-2.4
1,505,249	-		GFF1479	0.17	-1.2
1,505,261	+		GFF1479	0.18	-2.3
1,505,276	+		GFF1479	0.21	-1.4
1,505,284	-		GFF1479	0.22	-1.3
1,505,291	+		GFF1479	0.23	-1.6
1,505,299	-		GFF1479	0.24	-2.1
1,505,306	-		GFF1479	0.25	-0.2
1,505,312	+		GFF1479	0.26	-0.4
1,505,320	-		GFF1479	0.27	-0.9
1,505,320	-		GFF1479	0.27	-0.5
1,505,328	+		GFF1479	0.28	-0.1
1,505,333	+		GFF1479	0.29	+0.6
1,505,335	+		GFF1479	0.29	-0.6
1,505,335	+		GFF1479	0.29	+0.5
1,505,335	-		GFF1479	0.29	-0.1
1,505,341	-		GFF1479	0.30	-1.8
1,505,343	-		GFF1479	0.30	-1.0
1,505,345	-		GFF1479	0.31	-1.1
1,505,357	+		GFF1479	0.32	+0.3
1,505,357	+		GFF1479	0.32	-1.3
1,505,357	+		GFF1479	0.32	-1.7
1,505,357	+		GFF1479	0.32	-1.8
1,505,357	+		GFF1479	0.32	-1.6
1,505,357	+		GFF1479	0.32	-0.8
1,505,357	+		GFF1479	0.32	+0.5
1,505,357	+		GFF1479	0.32	-0.7
1,505,362	+		GFF1479	0.33	-1.0
1,505,365	-		GFF1479	0.34	-1.4
1,505,365	-		GFF1479	0.34	-0.5
1,505,365	-		GFF1479	0.34	-0.4
1,505,365	-		GFF1479	0.34	+0.1
1,505,365	-		GFF1479	0.34	+0.4
1,505,365	-		GFF1479	0.34	-1.1
1,505,377	-		GFF1479	0.35	+0.0
1,505,386	+		GFF1479	0.37	-1.0
1,505,412	-		GFF1479	0.40	+0.2
1,505,412	-		GFF1479	0.40	-1.2
1,505,412	-		GFF1479	0.40	-1.3
1,505,424	+		GFF1479	0.42	-0.1
1,505,424	+		GFF1479	0.42	+1.2
1,505,424	+		GFF1479	0.42	-1.1
1,505,424	+		GFF1479	0.42	-0.9
1,505,424	+		GFF1479	0.42	-1.5
1,505,424	+		GFF1479	0.42	-0.9
1,505,424	+		GFF1479	0.42	+0.1
1,505,424	+		GFF1479	0.42	-1.3
1,505,424	+		GFF1479	0.42	+1.3
1,505,424	+		GFF1479	0.42	-1.2
1,505,424	+		GFF1479	0.42	-1.9
1,505,424	+		GFF1479	0.42	-1.0
1,505,432	-		GFF1479	0.43	-0.4
1,505,432	-		GFF1479	0.43	-1.2
1,505,432	-		GFF1479	0.43	-1.1
1,505,432	-		GFF1479	0.43	-0.7
1,505,432	-		GFF1479	0.43	-0.2
1,505,432	-		GFF1479	0.43	+1.1
1,505,432	-		GFF1479	0.43	-0.9
1,505,432	-		GFF1479	0.43	+0.9
1,505,432	-		GFF1479	0.43	-2.1
1,505,432	-		GFF1479	0.43	+0.5
1,505,432	-		GFF1479	0.43	+0.3
1,505,438	+		GFF1479	0.44	-1.6
1,505,438	+		GFF1479	0.44	+0.0
1,505,451	+		GFF1479	0.46	+0.8
1,505,492	+		GFF1479	0.52	-1.1
1,505,495	-		GFF1479	0.53	+0.1
1,505,511	+		GFF1479	0.55	-0.3
1,505,519	-		GFF1479	0.56	+0.4
1,505,519	-		GFF1479	0.56	-1.4
1,505,526	+		GFF1479	0.57	-0.9
1,505,551	-		GFF1479	0.61	-0.5
1,505,570	+		GFF1479	0.63	-0.5
1,505,582	-		GFF1479	0.65	+0.0
1,505,600	+		GFF1479	0.68	+0.4
1,505,608	-		GFF1479	0.69	+0.6
1,505,617	+		GFF1479	0.70	-0.5
1,505,639	+		GFF1479	0.74	-1.6
1,505,639	+		GFF1479	0.74	-0.1
1,505,660	+		GFF1479	0.77	-1.8
1,505,686	+		GFF1479	0.80	+0.2
1,505,686	+		GFF1479	0.80	+0.1
1,505,686	+		GFF1479	0.80	-0.5
1,505,686	+		GFF1479	0.80	+0.8
1,505,686	+		GFF1479	0.80	+0.1
1,505,686	+		GFF1479	0.80	-2.0
1,505,686	+		GFF1479	0.80	+0.1
1,505,686	+		GFF1479	0.80	-1.1
1,505,686	+		GFF1479	0.80	+1.3
1,505,686	+		GFF1479	0.80	-0.2
1,505,686	+		GFF1479	0.80	-0.3
1,505,686	+		GFF1479	0.80	-0.1
1,505,686	+		GFF1479	0.80	+0.1
1,505,686	+		GFF1479	0.80	-0.2
1,505,686	+		GFF1479	0.80	-0.8
1,505,686	+		GFF1479	0.80	-0.7
1,505,686	+		GFF1479	0.80	+0.5
1,505,686	+		GFF1479	0.80	-0.4
1,505,686	+		GFF1479	0.80	-1.3
1,505,686	+		GFF1479	0.80	-1.6
1,505,686	+		GFF1479	0.80	+0.8
1,505,691	+		GFF1479	0.81	+0.6
1,505,694	-		GFF1479	0.82	+1.0
1,505,694	-		GFF1479	0.82	-0.3
1,505,694	-		GFF1479	0.82	+0.9
1,505,694	-		GFF1479	0.82	+0.9
1,505,694	-		GFF1479	0.82	+0.6
1,505,694	-		GFF1479	0.82	+1.1
1,505,694	-		GFF1479	0.82	-1.2
1,505,694	-		GFF1479	0.82	-0.8
1,505,694	-		GFF1479	0.82	-0.3
1,505,694	-		GFF1479	0.82	+1.1
1,505,694	-		GFF1479	0.82	-1.3
1,505,694	-		GFF1479	0.82	-1.0
1,505,694	-		GFF1479	0.82	+0.2
1,505,694	-		GFF1479	0.82	+0.1
1,505,694	-		GFF1479	0.82	-0.4
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