Strain Fitness in Sphingobium sp. HT1-2 around GFF1477

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,502,708	+				-0.1
1,502,708	+				-1.6
1,502,715	-				+0.9
1,502,720	+				+0.1
1,502,720	+				-0.1
1,502,728	-				+0.6
1,502,733	+				+0.8
1,502,758	-				+1.2
1,502,768	+				-0.2
1,502,778	+				-1.4
1,502,793	-				-0.0
1,502,793	-				-0.7
1,502,793	-				-1.9
1,502,800	+				-0.4
1,502,808	-				-1.3
1,502,813	-				-0.2
1,502,828	-				-0.2
1,502,841	+		GFF1476	0.10	-0.3
1,502,870	-		GFF1476	0.14	-0.7
1,502,893	-		GFF1476	0.16	+0.0
1,502,905	-		GFF1476	0.18	-0.8
1,502,907	+		GFF1476	0.18	-0.5
1,502,915	-		GFF1476	0.19	-1.0
1,502,924	-		GFF1476	0.20	-0.4
1,502,924	-		GFF1476	0.20	-1.6
1,502,924	-		GFF1476	0.20	+0.0
1,502,924	-		GFF1476	0.20	-1.4
1,502,946	-		GFF1476	0.23	-1.4
1,502,948	+		GFF1476	0.23	-1.1
1,502,953	+		GFF1476	0.23	-0.5
1,502,953	+		GFF1476	0.23	-0.3
1,502,953	+		GFF1476	0.23	-2.3
1,502,953	+		GFF1476	0.23	-0.1
1,502,956	-		GFF1476	0.24	-0.5
1,502,956	-		GFF1476	0.24	+0.1
1,502,956	-		GFF1476	0.24	-0.5
1,502,961	-		GFF1476	0.24	+0.4
1,502,961	-		GFF1476	0.24	+0.8
1,502,961	-		GFF1476	0.24	-0.3
1,502,961	-		GFF1476	0.24	-1.0
1,502,961	-		GFF1476	0.24	+0.7
1,502,961	-		GFF1476	0.24	-0.0
1,502,961	-		GFF1476	0.24	+0.9
1,502,963	+		GFF1476	0.25	-2.0
1,502,963	+		GFF1476	0.25	+0.1
1,502,963	+		GFF1476	0.25	+0.8
1,502,971	-		GFF1476	0.26	-1.5
1,502,971	-		GFF1476	0.26	+0.5
1,502,991	+		GFF1476	0.28	-0.3
1,503,001	+		GFF1476	0.29	-0.7
1,503,009	-		GFF1476	0.30	-0.7
1,503,009	-		GFF1476	0.30	-2.0
1,503,009	-		GFF1476	0.30	+0.1
1,503,040	+		GFF1476	0.34	-0.1
1,503,045	+		GFF1476	0.34	-0.5
1,503,048	-		GFF1476	0.34	+0.1
1,503,049	+		GFF1476	0.35	-0.5
1,503,057	+		GFF1476	0.36	+0.5
1,503,123	+		GFF1476	0.43	-0.4
1,503,129	+		GFF1476	0.44	+0.6
1,503,131	-		GFF1476	0.44	+0.9
1,503,131	-		GFF1476	0.44	-0.8
1,503,133	-		GFF1476	0.44	+0.8
1,503,136	+		GFF1476	0.45	-0.4
1,503,144	-		GFF1476	0.46	-0.4
1,503,144	-		GFF1476	0.46	-1.9
1,503,144	-		GFF1476	0.46	-0.6
1,503,149	+		GFF1476	0.46	-0.2
1,503,157	-		GFF1476	0.47	-0.0
1,503,167	-		GFF1476	0.48	-1.1
1,503,191	-		GFF1476	0.51	-1.8
1,503,249	-		GFF1476	0.58	-0.6
1,503,256	+		GFF1476	0.59	-0.4
1,503,256	+		GFF1476	0.59	-0.2
1,503,290	+		GFF1476	0.63	-1.0
1,503,297	+		GFF1476	0.63	-1.0
1,503,312	-		GFF1476	0.65	-1.2
1,503,332	+		GFF1476	0.67	-0.6
1,503,340	-		GFF1476	0.68	-1.0
1,503,402	-		GFF1476	0.76	-0.5
1,503,402	-		GFF1476	0.76	-0.8
1,503,402	-		GFF1476	0.76	+0.5
1,503,402	-		GFF1476	0.76	-1.9
1,503,414	+		GFF1476	0.77	-2.6
1,503,421	-		GFF1476	0.78	+2.1
1,503,464	-		GFF1476	0.83	-0.6
1,503,464	-		GFF1476	0.83	+0.1
1,503,469	+		GFF1476	0.83	-0.4
1,503,469	+		GFF1476	0.83	-0.3
1,503,470	-		GFF1476	0.84	+0.7
1,503,477	+		GFF1476	0.84	-0.9
1,503,477	-		GFF1476	0.84	+0.3
1,503,484	-		GFF1476	0.85	-1.4
1,503,493	+		GFF1476	0.86	-0.7
1,503,496	-		GFF1476	0.87	-0.3
1,503,501	-		GFF1476	0.87	-2.6
1,503,529	+				+0.3
1,503,530	-				-1.4
1,503,530	-				-0.7
1,503,539	+				-0.4
1,503,539	+				+0.9
1,503,542	+				+2.1
1,503,542	+				-0.2
1,503,542	-				-0.2
1,503,547	-				-1.1
1,503,549	-				+2.0
1,503,549	-				-1.3
1,503,560	-				-0.2
1,503,565	-				-1.4
1,503,565	-				-0.9
1,503,591	-				+0.9
1,503,600	+				+1.0
1,503,608	-				-1.2
1,503,631	+				-1.4
1,503,633	-				+1.5
1,503,639	-				-1.3
1,503,666	-				-0.8
1,503,682	-				-0.3
1,503,693	+				-2.5
1,503,733	-				-0.7
1,503,740	-				+0.3
1,503,742	+				-1.8
1,503,742	+				-1.8
1,503,750	-				-2.3
1,503,758	+		GFF1477	0.10	+0.6
1,503,788	+		GFF1477	0.16	+0.1
1,503,788	+		GFF1477	0.16	-0.6
1,503,788	+		GFF1477	0.16	-1.4
1,503,802	+		GFF1477	0.18	-0.9
1,503,802	+		GFF1477	0.18	-0.1
1,503,824	+		GFF1477	0.22	-2.3
1,503,826	+		GFF1477	0.23	-2.1
1,503,834	-		GFF1477	0.24	+0.6
1,503,834	-		GFF1477	0.24	-0.3
1,503,842	-		GFF1477	0.25	-0.5
1,503,874	+		GFF1477	0.31	+0.9
1,503,970	-		GFF1477	0.48	+0.3
1,503,972	+		GFF1477	0.49	-0.1
1,503,980	-		GFF1477	0.50	-0.5
1,503,980	-		GFF1477	0.50	+0.0
1,503,980	-		GFF1477	0.50	-2.5
1,503,980	-		GFF1477	0.50	-1.3
1,503,992	-		GFF1477	0.52	+0.1
1,503,998	+		GFF1477	0.54	-2.6
1,503,998	+		GFF1477	0.54	+0.7
1,503,998	+		GFF1477	0.54	-0.4
1,503,998	+		GFF1477	0.54	-0.6
1,504,003	+		GFF1477	0.54	-2.5
1,504,003	+		GFF1477	0.54	+0.1
1,504,003	+		GFF1477	0.54	-0.5
1,504,003	+		GFF1477	0.54	+0.5
1,504,006	-		GFF1477	0.55	-2.0
1,504,006	-		GFF1477	0.55	-2.9
1,504,006	-		GFF1477	0.55	-1.4
1,504,006	-		GFF1477	0.55	-1.3
1,504,011	-		GFF1477	0.56	-0.1
1,504,011	-		GFF1477	0.56	+0.3
1,504,011	-		GFF1477	0.56	+0.6
1,504,020	+		GFF1477	0.57	-1.4
1,504,020	+		GFF1477	0.57	+0.3
1,504,028	-		GFF1477	0.59	+0.5
1,504,066	+		GFF1477	0.66	-0.8
1,504,066	+		GFF1477	0.66	-0.8
1,504,074	-		GFF1477	0.67	-2.0
1,504,081	-		GFF1477	0.68	-2.5
1,504,100	-		GFF1477	0.72	-1.3
1,504,109	+		GFF1477	0.74	+0.1
1,504,117	-		GFF1477	0.75	-1.3
1,504,119	+		GFF1477	0.75	-2.5
1,504,122	-		GFF1477	0.76	-0.1
1,504,127	-		GFF1477	0.77	-0.3
1,504,134	+		GFF1477	0.78	-0.1
1,504,134	+		GFF1477	0.78	-0.9
1,504,142	-		GFF1477	0.79	-1.1
1,504,165	+		GFF1477	0.84	-0.8
1,504,165	+		GFF1477	0.84	-2.0
1,504,165	+		GFF1477	0.84	+0.8
1,504,184	+		GFF1477	0.87	-2.6
1,504,194	+		GFF1477	0.89	+0.1
1,504,194	+		GFF1477	0.89	-0.6
1,504,194	+		GFF1477	0.89	-0.3
1,504,194	+		GFF1477	0.89	-1.0
1,504,194	+		GFF1477	0.89	+0.7
1,504,202	-				-0.7
1,504,202	-				-0.3
1,504,202	-				-0.6
1,504,202	-				-3.0
1,504,202	-				-1.1
1,504,202	-				-0.3
1,504,244	-				-1.0
1,504,248	-				+1.3
1,504,249	+				-1.5
1,504,251	+				-1.0
1,504,257	-				-0.7
1,504,297	+				-0.5
1,504,305	-				-1.5
1,504,313	+				+0.0
1,504,336	+				-0.5
1,504,336	+				-0.2
1,504,344	-		GFF1478	0.10	-0.2
1,504,344	-		GFF1478	0.10	-0.9
1,504,346	+		GFF1478	0.10	-0.7
1,504,346	+		GFF1478	0.10	-0.5
1,504,346	+		GFF1478	0.10	-1.4
1,504,354	-		GFF1478	0.12	+0.1
1,504,371	-		GFF1478	0.14	+0.9
1,504,371	-		GFF1478	0.14	-0.7
1,504,396	-		GFF1478	0.17	+0.4
1,504,424	+		GFF1478	0.21	-0.2
1,504,425	+		GFF1478	0.21	+0.2
1,504,425	+		GFF1478	0.21	-0.5
1,504,431	+		GFF1478	0.22	-0.9
1,504,432	-		GFF1478	0.22	-1.1
1,504,432	-		GFF1478	0.22	+0.9
1,504,432	-		GFF1478	0.22	-0.1
1,504,433	-		GFF1478	0.22	-1.6
1,504,433	-		GFF1478	0.22	-1.2
1,504,433	-		GFF1478	0.22	-0.2
1,504,433	-		GFF1478	0.22	+0.6
1,504,474	+		GFF1478	0.28	+0.3
1,504,474	+		GFF1478	0.28	+1.3
1,504,480	+		GFF1478	0.28	-0.6
1,504,480	+		GFF1478	0.28	+0.7
1,504,480	+		GFF1478	0.28	-1.4
1,504,482	+		GFF1478	0.29	-0.7
1,504,482	+		GFF1478	0.29	-0.8
1,504,482	+		GFF1478	0.29	+2.5
1,504,482	+		GFF1478	0.29	-0.5
1,504,482	+		GFF1478	0.29	+1.1
1,504,482	-		GFF1478	0.29	+1.6
1,504,488	-		GFF1478	0.29	-1.0
1,504,488	-		GFF1478	0.29	-0.5
1,504,488	-		GFF1478	0.29	+0.6
1,504,490	-		GFF1478	0.30	-1.5
1,504,490	-		GFF1478	0.30	-0.1
1,504,490	-		GFF1478	0.30	-0.7
1,504,490	-		GFF1478	0.30	-0.8
1,504,492	+		GFF1478	0.30	-0.4
1,504,497	+		GFF1478	0.31	-2.4
1,504,497	+		GFF1478	0.31	+0.6
1,504,500	-		GFF1478	0.31	-1.1
1,504,500	-		GFF1478	0.31	+0.9
1,504,502	+		GFF1478	0.31	-1.5
1,504,505	-		GFF1478	0.32	-0.4
1,504,505	-		GFF1478	0.32	-0.7
1,504,515	+		GFF1478	0.33	+0.7
1,504,515	+		GFF1478	0.33	+0.0
1,504,515	+		GFF1478	0.33	-0.1
1,504,523	-		GFF1478	0.34	+0.4
1,504,523	-		GFF1478	0.34	-0.6
1,504,523	-		GFF1478	0.34	-0.5
1,504,523	-		GFF1478	0.34	-0.6
1,504,523	-		GFF1478	0.34	-0.5
1,504,539	+		GFF1478	0.36	+0.2
1,504,569	+		GFF1478	0.40	-0.9
1,504,569	+		GFF1478	0.40	+0.5
1,504,588	+		GFF1478	0.43	-1.2
1,504,588	+		GFF1478	0.43	-1.4
1,504,598	-		GFF1478	0.44	-1.1
1,504,609	-		GFF1478	0.46	+0.5
1,504,635	+		GFF1478	0.49	-0.1
1,504,665	+		GFF1478	0.53	-1.1
1,504,666	-		GFF1478	0.53	-1.7
1,504,666	-		GFF1478	0.53	+1.0
1,504,670	+		GFF1478	0.54	+1.0
1,504,670	+		GFF1478	0.54	-1.5
1,504,678	-		GFF1478	0.55	+0.0
1,504,678	-		GFF1478	0.55	-0.9
1,504,678	-		GFF1478	0.55	-1.3
1,504,678	-		GFF1478	0.55	+1.1
1,504,725	+		GFF1478	0.61	+0.2
1,504,725	+		GFF1478	0.61	-0.2
1,504,731	-		GFF1478	0.62	-2.3
1,504,733	-		GFF1478	0.62	-0.5
1,504,760	-		GFF1478	0.66	+1.0
1,504,789	-		GFF1478	0.70	+0.8
1,504,789	-		GFF1478	0.70	-3.0
1,504,806	+		GFF1478	0.72	-0.2
1,504,850	+		GFF1478	0.78	+1.4
1,504,863	+		GFF1478	0.80	-0.3
1,504,863	+		GFF1478	0.80	+0.3
1,504,863	+		GFF1478	0.80	+0.1
1,504,863	+		GFF1478	0.80	+0.3
1,504,863	+		GFF1478	0.80	+0.5
1,504,863	+		GFF1478	0.80	-0.6
1,504,868	+		GFF1478	0.80	-0.4
1,504,868	+		GFF1478	0.80	+0.0
1,504,871	-		GFF1478	0.81	-0.9
1,504,871	-		GFF1478	0.81	+1.5
1,504,871	-		GFF1478	0.81	+0.6
1,504,888	+		GFF1478	0.83	+0.8
1,504,896	-		GFF1478	0.84	-0.5
1,504,917	+		GFF1478	0.87	-1.8
1,504,918	+		GFF1478	0.87	-0.2
1,504,918	+		GFF1478	0.87	-2.1
1,504,918	+		GFF1478	0.87	-0.7
1,504,959	-				-0.1
1,504,979	+				-0.3
1,504,992	+				+0.4
1,505,006	-				-0.1
1,505,144	+				-0.4
1,505,144	+				+1.2
1,505,172	+				+0.0
1,505,173	-				+0.3
1,505,203	-		GFF1479	0.10	+0.1
1,505,215	-		GFF1479	0.12	+1.0
1,505,226	+		GFF1479	0.13	+0.2
1,505,226	+		GFF1479	0.13	+0.9
1,505,226	-		GFF1479	0.13	-1.2
1,505,241	+		GFF1479	0.16	-2.4
1,505,249	-		GFF1479	0.17	-1.2