Strain Fitness in Sphingobium sp. HT1-2 around GFF1472

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,499,394	-				-0.5
1,499,413	-				-1.8
1,499,437	+				-2.4
1,499,442	-				-1.5
1,499,445	-				-0.2
1,499,455	-				-0.4
1,499,461	-		GFF1471	0.11	+2.2
1,499,498	+		GFF1471	0.15	-0.4
1,499,513	+		GFF1471	0.16	-1.6
1,499,545	-		GFF1471	0.20	+0.2
1,499,559	-		GFF1471	0.21	-1.4
1,499,596	+		GFF1471	0.26	-1.0
1,499,610	+		GFF1471	0.27	-1.4
1,499,610	+		GFF1471	0.27	+0.3
1,499,620	+		GFF1471	0.28	-0.8
1,499,633	+		GFF1471	0.30	+0.4
1,499,636	-		GFF1471	0.30	+0.7
1,499,636	-		GFF1471	0.30	+0.0
1,499,665	+		GFF1471	0.33	-0.5
1,499,680	-		GFF1471	0.35	+0.9
1,499,683	-		GFF1471	0.35	-0.8
1,499,690	+		GFF1471	0.36	+0.1
1,499,691	-		GFF1471	0.36	-0.0
1,499,703	-		GFF1471	0.38	+0.1
1,499,726	-		GFF1471	0.40	-1.1
1,499,739	-		GFF1471	0.42	+0.2
1,499,743	-		GFF1471	0.42	-1.0
1,499,743	-		GFF1471	0.42	-0.2
1,499,800	+		GFF1471	0.48	-0.2
1,499,803	+		GFF1471	0.49	+0.3
1,499,810	-		GFF1471	0.50	+0.0
1,499,813	-		GFF1471	0.50	-1.6
1,499,852	-		GFF1471	0.54	-0.1
1,499,895	-		GFF1471	0.59	-0.3
1,499,943	-		GFF1471	0.64	-1.6
1,499,953	-		GFF1471	0.66	-0.2
1,499,975	-		GFF1471	0.68	+0.4
1,499,975	-		GFF1471	0.68	-1.4
1,499,977	+		GFF1471	0.68	+0.7
1,499,977	+		GFF1471	0.68	+1.3
1,499,977	+		GFF1471	0.68	-0.1
1,499,985	+		GFF1471	0.69	-1.8
1,499,985	-		GFF1471	0.69	+0.3
1,500,036	-		GFF1471	0.75	-0.6
1,500,055	-		GFF1471	0.77	-0.2
1,500,055	-		GFF1471	0.77	+0.5
1,500,055	-		GFF1471	0.77	+0.5
1,500,061	-		GFF1471	0.78	-0.5
1,500,073	+		GFF1471	0.79	-1.4
1,500,073	+		GFF1471	0.79	-0.1
1,500,081	-		GFF1471	0.80	-0.8
1,500,081	-		GFF1471	0.80	-1.1
1,500,113	+		GFF1471	0.83	-1.6
1,500,121	-		GFF1471	0.84	-0.3
1,500,121	-		GFF1471	0.84	+0.1
1,500,121	-		GFF1471	0.84	+0.9
1,500,125	-		GFF1471	0.85	-0.3
1,500,131	+		GFF1471	0.85	+0.3
1,500,131	+		GFF1471	0.85	-0.4
1,500,131	+		GFF1471	0.85	-0.0
1,500,131	+		GFF1471	0.85	-1.3
1,500,131	+		GFF1471	0.85	-0.1
1,500,131	-		GFF1471	0.85	+0.7
1,500,139	-		GFF1471	0.86	-0.1
1,500,139	-		GFF1471	0.86	+0.5
1,500,139	-		GFF1471	0.86	-1.2
1,500,148	+		GFF1471	0.87	-0.6
1,500,156	-		GFF1471	0.88	+1.3
1,500,156	-		GFF1471	0.88	-0.0
1,500,156	-		GFF1471	0.88	+0.2
1,500,174	+				-1.5
1,500,180	-				+0.8
1,500,209	+				-1.0
1,500,217	-				-0.3
1,500,255	+				-0.6
1,500,364	+				-0.4
1,500,364	+				-0.1
1,500,364	+				+1.5
1,500,366	+				-0.6
1,500,377	+				+0.0
1,500,383	+				+0.6
1,500,385	-				+0.6
1,500,391	-				-0.2
1,500,438	-				+0.9
1,500,481	+		GFF1472	0.15	-0.9
1,500,489	-		GFF1472	0.17	-0.6
1,500,489	-		GFF1472	0.17	-0.8
1,500,521	-		GFF1472	0.21	+0.5
1,500,569	+		GFF1472	0.28	+0.0
1,500,569	-		GFF1472	0.28	+0.1
1,500,577	-		GFF1472	0.29	+0.3
1,500,587	+		GFF1472	0.30	-2.4
1,500,592	-		GFF1472	0.31	-0.3
1,500,592	-		GFF1472	0.31	-0.5
1,500,613	+		GFF1472	0.34	+0.1
1,500,613	+		GFF1472	0.34	+0.6
1,500,613	+		GFF1472	0.34	-0.7
1,500,613	+		GFF1472	0.34	-1.3
1,500,613	+		GFF1472	0.34	+1.5
1,500,616	-		GFF1472	0.34	-0.5
1,500,621	-		GFF1472	0.35	+0.4
1,500,623	+		GFF1472	0.35	+0.3
1,500,627	+		GFF1472	0.36	+0.5
1,500,627	+		GFF1472	0.36	+0.5
1,500,635	-		GFF1472	0.37	-1.3
1,500,644	-		GFF1472	0.38	+0.1
1,500,658	+		GFF1472	0.40	-1.4
1,500,663	+		GFF1472	0.41	+0.2
1,500,666	-		GFF1472	0.41	-0.5
1,500,712	+		GFF1472	0.47	+0.6
1,500,719	+		GFF1472	0.48	-2.1
1,500,719	+		GFF1472	0.48	+0.2
1,500,727	-		GFF1472	0.50	-0.4
1,500,727	-		GFF1472	0.50	-1.1
1,500,727	-		GFF1472	0.50	-0.1
1,500,727	-		GFF1472	0.50	-0.3
1,500,737	-		GFF1472	0.51	+0.1
1,500,757	+		GFF1472	0.54	-0.2
1,500,781	+		GFF1472	0.57	-0.4
1,500,781	+		GFF1472	0.57	-0.2
1,500,781	+		GFF1472	0.57	+0.1
1,500,823	+		GFF1472	0.63	-1.2
1,500,831	-		GFF1472	0.64	-1.2
1,500,841	+		GFF1472	0.65	-0.8
1,500,846	+		GFF1472	0.66	-0.7
1,500,846	+		GFF1472	0.66	-0.2
1,500,846	+		GFF1472	0.66	+0.1
1,500,846	+		GFF1472	0.66	-1.0
1,500,846	+		GFF1472	0.66	+0.2
1,500,851	+		GFF1472	0.67	-0.3
1,500,854	-		GFF1472	0.67	+0.7
1,500,854	-		GFF1472	0.67	+0.5
1,500,854	-		GFF1472	0.67	+0.9
1,500,854	-		GFF1472	0.67	-0.2
1,500,854	-		GFF1472	0.67	+0.4
1,500,897	+		GFF1472	0.73	-0.1
1,500,897	+		GFF1472	0.73	+1.3
1,500,904	+		GFF1472	0.74	-0.9
1,500,905	-		GFF1472	0.74	+0.1
1,500,937	+		GFF1472	0.79	+0.6
1,500,945	-		GFF1472	0.80	+0.8
1,500,954	+		GFF1472	0.81	-1.5
1,500,962	-		GFF1472	0.82	+0.3
1,500,962	-		GFF1472	0.82	-1.6
1,500,972	+		GFF1472	0.84	-0.5
1,500,974	-		GFF1472	0.84	+0.4
1,500,992	+		GFF1472	0.86	-0.4
1,500,993	-		GFF1472	0.87	-0.8
1,501,000	-		GFF1472	0.88	-0.2
1,501,008	-		GFF1472	0.89	-0.6
1,501,008	-		GFF1472	0.89	-2.2
1,501,015	+		GFF1472	0.90	-0.0
1,501,026	-				-0.1
1,501,051	+				-0.5
1,501,051	+				+0.4
1,501,059	-				-1.2
1,501,059	-				-0.1
1,501,059	-				+0.3
1,501,059	-				+0.4
1,501,059	-				-0.9
1,501,077	-				-2.2
1,501,082	-				-0.5
1,501,088	+				-0.3
1,501,097	-				+0.1
1,501,098	-				-1.2
1,501,113	+				-0.6
1,501,124	+				-2.6
1,501,124	+				+0.4
1,501,124	+				-0.4
1,501,124	+				-1.3
1,501,132	-				-0.3
1,501,138	+				-1.6
1,501,146	-				-1.5
1,501,146	-				-1.0
1,501,147	-				-2.0
1,501,149	+				+1.6
1,501,156	-				-0.0
1,501,163	+				-0.5
1,501,175	+				-1.3
1,501,183	+				+0.6
1,501,183	-				+0.6
1,501,183	-				-0.0
1,501,190	-				+0.4
1,501,221	+				-1.6
1,501,222	+				-1.6
1,501,230	-				+0.8
1,501,240	+				-0.8
1,501,240	+				+0.9
1,501,265	-				-0.3
1,501,273	+				-0.3
1,501,273	+				-1.6
1,501,273	+				-0.4
1,501,279	+				-1.0
1,501,279	+				-1.5
1,501,279	+				+0.7
1,501,287	-		GFF1473	0.11	+1.3
1,501,287	-		GFF1473	0.11	-1.2
1,501,287	-		GFF1473	0.11	+0.4
1,501,293	-		GFF1473	0.12	+0.6
1,501,298	+		GFF1473	0.13	+0.1
1,501,301	-		GFF1473	0.14	-0.3
1,501,315	+		GFF1473	0.16	-0.1
1,501,321	+		GFF1473	0.17	-0.8
1,501,323	-		GFF1473	0.17	+0.3
1,501,365	-		GFF1473	0.24	-1.6
1,501,380	-		GFF1473	0.27	+0.7
1,501,381	+		GFF1473	0.27	-0.9
1,501,381	+		GFF1473	0.27	-0.6
1,501,381	+		GFF1473	0.27	-1.0
1,501,389	-		GFF1473	0.28	+0.2
1,501,389	-		GFF1473	0.28	-2.7
1,501,390	+		GFF1473	0.28	-1.8
1,501,407	+		GFF1473	0.31	+0.8
1,501,467	+		GFF1473	0.41	-1.6
1,501,488	+		GFF1473	0.45	+0.5
1,501,488	+		GFF1473	0.45	-0.1
1,501,498	+		GFF1473	0.46	-0.6
1,501,506	+		GFF1473	0.48	-1.4
1,501,506	-		GFF1473	0.48	-0.9
1,501,540	+		GFF1473	0.53	-1.1
1,501,552	+		GFF1473	0.55	-1.3
1,501,552	+		GFF1473	0.55	+0.6
1,501,552	+		GFF1473	0.55	+0.3
1,501,555	-		GFF1473	0.56	-2.6
1,501,560	-		GFF1473	0.57	-1.3
1,501,563	+		GFF1473	0.57	+0.9
1,501,571	-		GFF1473	0.58	-0.5
1,501,591	-		GFF1473	0.62	-0.7
1,501,592	-		GFF1473	0.62	-0.7
1,501,612	-		GFF1473	0.65	-0.2
1,501,613	-		GFF1473	0.66	-1.6
1,501,629	+		GFF1473	0.68	+0.3
1,501,640	+		GFF1473	0.70	-0.3
1,501,640	+		GFF1473	0.70	+0.6
1,501,641	+		GFF1473	0.70	+0.4
1,501,646	+		GFF1473	0.71	-1.2
1,501,654	-		GFF1473	0.72	+1.7
1,501,654	-		GFF1473	0.72	+0.6
1,501,654	-		GFF1473	0.72	+0.1
1,501,656	-		GFF1473	0.73	-0.2
1,501,664	-		GFF1473	0.74	-0.1
1,501,678	-		GFF1473	0.76	+0.4
1,501,678	-		GFF1473	0.76	+1.0
1,501,696	+		GFF1473	0.79	-1.7
1,501,703	+		GFF1473	0.81	-0.4
1,501,704	-		GFF1473	0.81	-0.5
1,501,715	-		GFF1473	0.82	-1.1
1,501,715	-		GFF1473	0.82	+1.3
1,501,717	+		GFF1473	0.83	+0.3
1,501,734	+		GFF1473	0.86	+0.1
1,501,749	+		GFF1473	0.88	-0.3
1,501,752	-		GFF1473	0.89	-0.4
1,501,754	+		GFF1473	0.89	-1.5
1,501,754	+		GFF1473	0.89	+0.4
1,501,754	+		GFF1473	0.89	+0.1
1,501,754	+		GFF1473	0.89	-0.6
1,501,762	-				-1.4
1,501,762	-				+1.0
1,501,762	-				+0.8
1,501,762	-				-1.8
1,501,819	+				-2.5
1,501,841	-				-0.8
1,501,859	+				+0.0
1,501,887	+				+0.1
1,501,890	+				-1.2
1,501,898	-				-2.0
1,501,898	-				-1.7
1,501,904	+				-0.5
1,501,904	+				-1.0
1,501,904	+				-0.2
1,501,904	+				+2.1
1,501,904	+				-1.6
1,501,904	+				+0.2
1,501,912	-				+0.3
1,501,950	+				-1.1
1,501,957	-				-0.5
1,501,966	+		GFF1474	0.13	-0.1
1,501,966	+		GFF1474	0.13	-1.1
1,501,974	-		GFF1474	0.17	+0.0
1,501,985	+		GFF1474	0.22	-0.7
1,501,995	+		GFF1474	0.27	-0.5
1,502,003	-		GFF1474	0.31	+0.6
1,502,003	-		GFF1474	0.31	-0.6
1,502,024	+		GFF1474	0.41	-2.1
1,502,024	+		GFF1474	0.41	+0.6
1,502,024	+		GFF1474	0.41	-2.4
1,502,024	+		GFF1474	0.41	+0.3
1,502,024	+		GFF1474	0.41	+0.1
1,502,024	+		GFF1474	0.41	-0.7
1,502,032	-		GFF1474	0.45	-1.4
1,502,032	-		GFF1474	0.45	-0.1
1,502,032	-		GFF1474	0.45	-1.5
1,502,032	-		GFF1474	0.45	-0.3
1,502,032	-		GFF1474	0.45	-0.9
1,502,032	-		GFF1474	0.45	-0.4
1,502,060	+		GFF1474	0.58	-0.6
1,502,060	+		GFF1474	0.58	-0.5
1,502,060	+		GFF1474	0.58	-0.0
1,502,060	+		GFF1474	0.58	-0.3
1,502,060	+		GFF1474	0.58	+0.1
1,502,060	+		GFF1474	0.58	+1.0
1,502,065	+		GFF1474	0.61	+0.1
1,502,065	+		GFF1474	0.61	-1.3
1,502,066	+		GFF1474	0.61	-1.5
1,502,068	-		GFF1474	0.62	+0.4
1,502,068	-		GFF1474	0.62	-0.7
1,502,072	+		GFF1474	0.64	-1.2
1,502,073	-		GFF1474	0.65	-0.4
1,502,073	-		GFF1474	0.65	+0.5
1,502,073	-		GFF1474	0.65	-0.6
1,502,084	+		GFF1474	0.70	+0.4