Strain Fitness in Sphingobium sp. HT1-2 around GFF1471

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,498,393	+				+0.4
1,498,408	+				-1.3
1,498,411	-				-0.4
1,498,411	-				+0.6
1,498,413	+				-2.2
1,498,413	+				-0.9
1,498,418	+				-0.1
1,498,418	+				+0.0
1,498,418	+				+0.3
1,498,418	+				-1.3
1,498,426	-				+0.4
1,498,426	-				-0.7
1,498,426	-				-0.3
1,498,426	-				-0.3
1,498,426	-				-0.7
1,498,426	-				-0.2
1,498,426	-				+0.2
1,498,426	-				-1.3
1,498,426	-				+0.2
1,498,426	-				+0.5
1,498,431	+				+0.7
1,498,439	-				-0.7
1,498,439	-				-0.4
1,498,462	+		GFF1470	0.13	-0.2
1,498,462	+		GFF1470	0.13	-1.5
1,498,470	-		GFF1470	0.14	-0.1
1,498,520	+		GFF1470	0.21	+1.5
1,498,533	-		GFF1470	0.23	-1.1
1,498,545	-		GFF1470	0.25	-0.3
1,498,569	+		GFF1470	0.28	+0.0
1,498,569	+		GFF1470	0.28	-1.1
1,498,572	-		GFF1470	0.28	-1.0
1,498,574	+		GFF1470	0.29	+0.0
1,498,582	+		GFF1470	0.30	-1.3
1,498,583	-		GFF1470	0.30	-0.2
1,498,584	-		GFF1470	0.30	+0.5
1,498,586	+		GFF1470	0.30	-0.1
1,498,590	+		GFF1470	0.31	-2.0
1,498,599	-		GFF1470	0.32	-1.1
1,498,626	+		GFF1470	0.36	+0.2
1,498,626	+		GFF1470	0.36	-0.5
1,498,626	+		GFF1470	0.36	+1.0
1,498,634	-		GFF1470	0.37	+1.5
1,498,660	-		GFF1470	0.41	+1.3
1,498,709	+		GFF1470	0.48	+0.7
1,498,718	+		GFF1470	0.49	+0.5
1,498,730	+		GFF1470	0.51	-1.3
1,498,733	+		GFF1470	0.51	+1.3
1,498,738	+		GFF1470	0.52	+0.9
1,498,738	+		GFF1470	0.52	+0.0
1,498,738	+		GFF1470	0.52	-1.3
1,498,738	+		GFF1470	0.52	+1.0
1,498,746	-		GFF1470	0.53	+1.1
1,498,746	-		GFF1470	0.53	+0.0
1,498,765	+		GFF1470	0.56	-0.2
1,498,811	-		GFF1470	0.62	-0.8
1,498,817	-		GFF1470	0.63	+0.3
1,498,818	-		GFF1470	0.63	-0.3
1,498,818	-		GFF1470	0.63	-0.3
1,498,827	-		GFF1470	0.64	+0.8
1,498,848	+		GFF1470	0.67	-0.1
1,498,848	+		GFF1470	0.67	-0.4
1,498,848	+		GFF1470	0.67	+0.8
1,498,853	+		GFF1470	0.68	+0.7
1,498,853	+		GFF1470	0.68	-0.1
1,498,855	-		GFF1470	0.68	-0.5
1,498,856	-		GFF1470	0.69	+0.5
1,498,856	-		GFF1470	0.69	-0.4
1,498,856	-		GFF1470	0.69	-1.6
1,498,856	-		GFF1470	0.69	-0.1
1,498,861	+		GFF1470	0.69	+1.1
1,498,861	-		GFF1470	0.69	+0.9
1,498,861	-		GFF1470	0.69	+0.8
1,498,861	-		GFF1470	0.69	+0.8
1,498,868	-		GFF1470	0.70	-1.3
1,498,869	-		GFF1470	0.70	+1.6
1,498,869	-		GFF1470	0.70	-0.2
1,498,876	-		GFF1470	0.71	-1.0
1,498,895	+		GFF1470	0.74	-0.7
1,498,895	+		GFF1470	0.74	-0.8
1,498,895	+		GFF1470	0.74	-0.0
1,498,895	+		GFF1470	0.74	-0.1
1,498,895	+		GFF1470	0.74	-0.2
1,498,895	+		GFF1470	0.74	+1.1
1,498,895	+		GFF1470	0.74	-0.9
1,498,895	+		GFF1470	0.74	-0.3
1,498,895	+		GFF1470	0.74	+0.4
1,498,895	+		GFF1470	0.74	-0.9
1,498,895	+		GFF1470	0.74	-0.8
1,498,895	+		GFF1470	0.74	+0.1
1,498,897	+		GFF1470	0.74	-1.9
1,498,901	+		GFF1470	0.75	-0.7
1,498,903	-		GFF1470	0.75	+1.1
1,498,903	-		GFF1470	0.75	-0.4
1,498,903	-		GFF1470	0.75	+0.9
1,498,903	-		GFF1470	0.75	-0.5
1,498,903	-		GFF1470	0.75	-0.1
1,498,903	-		GFF1470	0.75	-0.7
1,498,903	-		GFF1470	0.75	-0.3
1,498,903	-		GFF1470	0.75	+0.5
1,498,903	-		GFF1470	0.75	-0.1
1,498,903	-		GFF1470	0.75	+0.7
1,498,903	-		GFF1470	0.75	-0.1
1,498,903	-		GFF1470	0.75	+0.5
1,498,903	-		GFF1470	0.75	+0.7
1,498,903	-		GFF1470	0.75	-1.3
1,498,903	-		GFF1470	0.75	+0.2
1,498,903	-		GFF1470	0.75	+1.1
1,498,904	+		GFF1470	0.75	+0.8
1,498,919	+		GFF1470	0.77	+1.0
1,498,925	+		GFF1470	0.78	+0.2
1,498,925	+		GFF1470	0.78	+0.5
1,498,927	-		GFF1470	0.79	-0.2
1,498,927	-		GFF1470	0.79	+0.2
1,498,927	-		GFF1470	0.79	-1.4
1,498,930	+		GFF1470	0.79	+0.8
1,498,933	+		GFF1470	0.79	-0.2
1,498,933	-		GFF1470	0.79	-0.2
1,498,933	-		GFF1470	0.79	+0.9
1,498,938	-		GFF1470	0.80	+0.5
1,498,938	-		GFF1470	0.80	-0.0
1,498,938	-		GFF1470	0.80	+0.7
1,498,943	-		GFF1470	0.81	-0.5
1,498,945	+		GFF1470	0.81	-1.3
1,498,947	+		GFF1470	0.81	+0.4
1,498,948	-		GFF1470	0.81	-0.4
1,498,955	-		GFF1470	0.82	-0.4
1,498,956	-		GFF1470	0.83	+0.5
1,498,972	-		GFF1470	0.85	-0.2
1,498,985	+		GFF1470	0.87	-0.3
1,498,990	+		GFF1470	0.87	+0.4
1,498,993	+		GFF1470	0.88	-0.7
1,499,000	+		GFF1470	0.89	-1.0
1,499,000	+		GFF1470	0.89	+0.3
1,499,000	+		GFF1470	0.89	-1.8
1,499,000	-		GFF1470	0.89	+1.1
1,499,000	-		GFF1470	0.89	+0.3
1,499,017	-				-1.5
1,499,022	-				-0.0
1,499,036	+				-0.7
1,499,036	+				-0.8
1,499,036	+				-0.1
1,499,044	-				+0.6
1,499,044	-				-0.8
1,499,046	+				-0.2
1,499,074	-				+0.5
1,499,086	-				+0.2
1,499,103	+				-0.4
1,499,108	+				-3.3
1,499,113	-				-1.1
1,499,123	+				+1.3
1,499,265	+				-1.5
1,499,265	+				-1.3
1,499,289	+				-0.5
1,499,289	+				+0.5
1,499,289	+				-0.3
1,499,289	+				+0.5
1,499,297	-				-0.5
1,499,297	-				-1.0
1,499,297	-				-1.2
1,499,297	-				-1.2
1,499,307	-				+0.3
1,499,307	-				-0.6
1,499,354	+				+1.0
1,499,354	+				-2.0
1,499,354	+				+0.0
1,499,354	+				+0.1
1,499,354	+				-0.5
1,499,354	+				-2.2
1,499,354	+				-0.3
1,499,354	+				+0.4
1,499,354	+				-0.2
1,499,354	+				+0.6
1,499,354	+				-0.4
1,499,362	-				-0.8
1,499,362	-				-0.5
1,499,362	-				+0.7
1,499,362	-				-1.2
1,499,362	-				-0.2
1,499,362	-				+1.3
1,499,362	-				+0.1
1,499,362	-				+0.6
1,499,394	-				-0.5
1,499,413	-				-1.8
1,499,437	+				-2.4
1,499,442	-				-1.5
1,499,445	-				-0.2
1,499,455	-				-0.4
1,499,461	-		GFF1471	0.11	+2.2
1,499,498	+		GFF1471	0.15	-0.4
1,499,513	+		GFF1471	0.16	-1.6
1,499,545	-		GFF1471	0.20	+0.2
1,499,559	-		GFF1471	0.21	-1.4
1,499,596	+		GFF1471	0.26	-1.0
1,499,610	+		GFF1471	0.27	-1.4
1,499,610	+		GFF1471	0.27	+0.3
1,499,620	+		GFF1471	0.28	-0.8
1,499,633	+		GFF1471	0.30	+0.4
1,499,636	-		GFF1471	0.30	+0.7
1,499,636	-		GFF1471	0.30	+0.0
1,499,665	+		GFF1471	0.33	-0.5
1,499,680	-		GFF1471	0.35	+0.9
1,499,683	-		GFF1471	0.35	-0.8
1,499,690	+		GFF1471	0.36	+0.1
1,499,691	-		GFF1471	0.36	-0.0
1,499,703	-		GFF1471	0.38	+0.1
1,499,726	-		GFF1471	0.40	-1.1
1,499,739	-		GFF1471	0.42	+0.2
1,499,743	-		GFF1471	0.42	-1.0
1,499,743	-		GFF1471	0.42	-0.2
1,499,800	+		GFF1471	0.48	-0.2
1,499,803	+		GFF1471	0.49	+0.3
1,499,810	-		GFF1471	0.50	+0.0
1,499,813	-		GFF1471	0.50	-1.6
1,499,852	-		GFF1471	0.54	-0.1
1,499,895	-		GFF1471	0.59	-0.3
1,499,943	-		GFF1471	0.64	-1.6
1,499,953	-		GFF1471	0.66	-0.2
1,499,975	-		GFF1471	0.68	+0.4
1,499,975	-		GFF1471	0.68	-1.4
1,499,977	+		GFF1471	0.68	+0.7
1,499,977	+		GFF1471	0.68	+1.3
1,499,977	+		GFF1471	0.68	-0.1
1,499,985	+		GFF1471	0.69	-1.8
1,499,985	-		GFF1471	0.69	+0.3
1,500,036	-		GFF1471	0.75	-0.6
1,500,055	-		GFF1471	0.77	-0.2
1,500,055	-		GFF1471	0.77	+0.5
1,500,055	-		GFF1471	0.77	+0.5
1,500,061	-		GFF1471	0.78	-0.5
1,500,073	+		GFF1471	0.79	-1.4
1,500,073	+		GFF1471	0.79	-0.1
1,500,081	-		GFF1471	0.80	-0.8
1,500,081	-		GFF1471	0.80	-1.1
1,500,113	+		GFF1471	0.83	-1.6
1,500,121	-		GFF1471	0.84	-0.3
1,500,121	-		GFF1471	0.84	+0.1
1,500,121	-		GFF1471	0.84	+0.9
1,500,125	-		GFF1471	0.85	-0.3
1,500,131	+		GFF1471	0.85	+0.3
1,500,131	+		GFF1471	0.85	-0.4
1,500,131	+		GFF1471	0.85	-0.0
1,500,131	+		GFF1471	0.85	-1.3
1,500,131	+		GFF1471	0.85	-0.1
1,500,131	-		GFF1471	0.85	+0.7
1,500,139	-		GFF1471	0.86	-0.1
1,500,139	-		GFF1471	0.86	+0.5
1,500,139	-		GFF1471	0.86	-1.2
1,500,148	+		GFF1471	0.87	-0.6
1,500,156	-		GFF1471	0.88	+1.3
1,500,156	-		GFF1471	0.88	-0.0
1,500,156	-		GFF1471	0.88	+0.2
1,500,174	+				-1.5
1,500,180	-				+0.8
1,500,209	+				-1.0
1,500,217	-				-0.3
1,500,255	+				-0.6
1,500,364	+				-0.4
1,500,364	+				-0.1
1,500,364	+				+1.5
1,500,366	+				-0.6
1,500,377	+				+0.0
1,500,383	+				+0.6
1,500,385	-				+0.6
1,500,391	-				-0.2
1,500,438	-				+0.9
1,500,481	+		GFF1472	0.15	-0.9
1,500,489	-		GFF1472	0.17	-0.6
1,500,489	-		GFF1472	0.17	-0.8
1,500,521	-		GFF1472	0.21	+0.5
1,500,569	+		GFF1472	0.28	+0.0
1,500,569	-		GFF1472	0.28	+0.1
1,500,577	-		GFF1472	0.29	+0.3
1,500,587	+		GFF1472	0.30	-2.4
1,500,592	-		GFF1472	0.31	-0.3
1,500,592	-		GFF1472	0.31	-0.5
1,500,613	+		GFF1472	0.34	+0.1
1,500,613	+		GFF1472	0.34	+0.6
1,500,613	+		GFF1472	0.34	-0.7
1,500,613	+		GFF1472	0.34	-1.3
1,500,613	+		GFF1472	0.34	+1.5
1,500,616	-		GFF1472	0.34	-0.5
1,500,621	-		GFF1472	0.35	+0.4
1,500,623	+		GFF1472	0.35	+0.3
1,500,627	+		GFF1472	0.36	+0.5
1,500,627	+		GFF1472	0.36	+0.5
1,500,635	-		GFF1472	0.37	-1.3
1,500,644	-		GFF1472	0.38	+0.1
1,500,658	+		GFF1472	0.40	-1.4
1,500,663	+		GFF1472	0.41	+0.2
1,500,666	-		GFF1472	0.41	-0.5
1,500,712	+		GFF1472	0.47	+0.6
1,500,719	+		GFF1472	0.48	-2.1
1,500,719	+		GFF1472	0.48	+0.2
1,500,727	-		GFF1472	0.50	-0.4
1,500,727	-		GFF1472	0.50	-1.1
1,500,727	-		GFF1472	0.50	-0.1
1,500,727	-		GFF1472	0.50	-0.3
1,500,737	-		GFF1472	0.51	+0.1
1,500,757	+		GFF1472	0.54	-0.2
1,500,781	+		GFF1472	0.57	-0.4
1,500,781	+		GFF1472	0.57	-0.2
1,500,781	+		GFF1472	0.57	+0.1
1,500,823	+		GFF1472	0.63	-1.2
1,500,831	-		GFF1472	0.64	-1.2
1,500,841	+		GFF1472	0.65	-0.8
1,500,846	+		GFF1472	0.66	-0.7
1,500,846	+		GFF1472	0.66	-0.2
1,500,846	+		GFF1472	0.66	+0.1
1,500,846	+		GFF1472	0.66	-1.0
1,500,846	+		GFF1472	0.66	+0.2
1,500,851	+		GFF1472	0.67	-0.3
1,500,854	-		GFF1472	0.67	+0.7
1,500,854	-		GFF1472	0.67	+0.5
1,500,854	-		GFF1472	0.67	+0.9
1,500,854	-		GFF1472	0.67	-0.2
1,500,854	-		GFF1472	0.67	+0.4
1,500,897	+		GFF1472	0.73	-0.1
1,500,897	+		GFF1472	0.73	+1.3
1,500,904	+		GFF1472	0.74	-0.9
1,500,905	-		GFF1472	0.74	+0.1
1,500,937	+		GFF1472	0.79	+0.6
1,500,945	-		GFF1472	0.80	+0.8
1,500,954	+		GFF1472	0.81	-1.5
1,500,962	-		GFF1472	0.82	+0.3
1,500,962	-		GFF1472	0.82	-1.6
1,500,972	+		GFF1472	0.84	-0.5
1,500,974	-		GFF1472	0.84	+0.4
1,500,992	+		GFF1472	0.86	-0.4
1,500,993	-		GFF1472	0.87	-0.8
1,501,000	-		GFF1472	0.88	-0.2
1,501,008	-		GFF1472	0.89	-0.6
1,501,008	-		GFF1472	0.89	-2.2
1,501,015	+		GFF1472	0.90	-0.0
1,501,026	-				-0.1
1,501,051	+				-0.5
1,501,051	+				+0.4
1,501,059	-				-1.2
1,501,059	-				-0.1
1,501,059	-				+0.3
1,501,059	-				+0.4
1,501,059	-				-0.9
1,501,077	-				-2.2
1,501,082	-				-0.5
1,501,088	+				-0.3
1,501,097	-				+0.1
1,501,098	-				-1.2
1,501,113	+				-0.6
1,501,124	+				-2.6
1,501,124	+				+0.4
1,501,124	+				-0.4
1,501,124	+				-1.3
1,501,132	-				-0.3
1,501,138	+				-1.6
1,501,146	-				-1.5
1,501,146	-				-1.0
1,501,147	-				-2.0
1,501,149	+				+1.6
1,501,156	-				-0.0
1,501,163	+				-0.5
1,501,175	+				-1.3
1,501,183	+				+0.6
1,501,183	-				+0.6
1,501,183	-				-0.0
1,501,190	-				+0.4
1,501,221	+				-1.6
1,501,222	+				-1.6
1,501,230	-				+0.8
1,501,240	+				-0.8
1,501,240	+				+0.9