Strain Fitness in Sphingobium sp. HT1-2 around GFF1448

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,474,543	-				-0.9
1,474,559	-				+0.9
1,474,583	-				+0.3
1,474,594	+				+0.2
1,474,594	+				-1.4
1,474,597	-				+0.3
1,474,602	-				+0.7
1,474,622	+				-0.4
1,474,627	+				-1.9
1,474,630	-				+0.8
1,474,630	-				-0.3
1,474,630	-				-1.1
1,474,635	-				-0.6
1,474,663	+				+0.4
1,474,666	-				+0.0
1,474,674	+				+0.0
1,474,689	+				-1.8
1,474,692	-				+0.6
1,474,697	+				+0.1
1,474,697	-				+0.0
1,474,715	-				-0.1
1,474,721	+				-0.9
1,474,733	+		GFF1445	0.14	-0.3
1,474,738	+		GFF1445	0.16	-0.3
1,474,738	+		GFF1445	0.16	-0.8
1,474,739	-		GFF1445	0.16	+0.4
1,474,743	+		GFF1445	0.18	+0.4
1,474,746	-		GFF1445	0.19	+0.4
1,474,746	-		GFF1445	0.19	-0.7
1,474,751	-		GFF1445	0.21	+0.7
1,474,751	-		GFF1445	0.21	-2.3
1,474,751	-		GFF1445	0.21	+0.5
1,474,751	-		GFF1445	0.21	+0.4
1,474,751	-		GFF1445	0.21	+0.8
1,474,761	+		GFF1445	0.25	-1.1
1,474,762	-		GFF1445	0.25	+0.2
1,474,762	-		GFF1445	0.25	+0.5
1,474,767	-		GFF1445	0.27	+0.4
1,474,788	+		GFF1445	0.36	-1.0
1,474,788	+		GFF1445	0.36	-1.0
1,474,788	+		GFF1445	0.36	-0.4
1,474,788	+		GFF1445	0.36	+0.4
1,474,801	+		GFF1445	0.41	-1.3
1,474,801	+		GFF1445	0.41	+0.7
1,474,830	-		GFF1445	0.53	-0.3
1,474,839	+		GFF1445	0.56	-0.3
1,474,839	+		GFF1445	0.56	+0.2
1,474,839	+		GFF1445	0.56	-2.6
1,474,839	+		GFF1445	0.56	-1.9
1,474,839	+		GFF1445	0.56	+1.0
1,474,839	+		GFF1445	0.56	-1.9
1,474,839	+		GFF1445	0.56	-1.7
1,474,840	-		GFF1445	0.57	+0.3
1,474,844	+		GFF1445	0.58	-1.8
1,474,844	+		GFF1445	0.58	-0.6
1,474,844	+		GFF1445	0.58	+0.9
1,474,847	-		GFF1445	0.59	-0.2
1,474,847	-		GFF1445	0.59	-0.2
1,474,847	-		GFF1445	0.59	-2.4
1,474,847	-		GFF1445	0.59	+1.9
1,474,857	-		GFF1445	0.63	-2.2
1,474,860	+		GFF1445	0.65	+0.4
1,474,882	+		GFF1445	0.73	-0.6
1,474,896	-		GFF1445	0.79	-0.6
1,474,940	+				-1.7
1,474,949	+				+0.4
1,474,975	+				-0.1
1,474,991	+				+0.1
1,474,996	+				-1.2
1,474,999	-				-0.1
1,474,999	-				+1.8
1,474,999	-				-0.0
1,475,004	-				+0.9
1,475,004	-				-0.7
1,475,009	-				-0.0
1,475,032	+		GFF1446	0.16	-2.2
1,475,032	+		GFF1446	0.16	+1.1
1,475,032	+		GFF1446	0.16	+0.1
1,475,037	+		GFF1446	0.18	-0.4
1,475,040	-		GFF1446	0.19	+0.0
1,475,040	-		GFF1446	0.19	-2.4
1,475,040	-		GFF1446	0.19	+0.1
1,475,040	-		GFF1446	0.19	-0.8
1,475,043	+		GFF1446	0.20	-0.5
1,475,056	-		GFF1446	0.25	-0.1
1,475,056	-		GFF1446	0.25	-1.3
1,475,056	-		GFF1446	0.25	+0.1
1,475,056	-		GFF1446	0.25	+0.1
1,475,061	-		GFF1446	0.27	-1.5
1,475,061	-		GFF1446	0.27	-1.7
1,475,061	-		GFF1446	0.27	-0.0
1,475,061	-		GFF1446	0.27	+0.7
1,475,061	-		GFF1446	0.27	-0.1
1,475,061	-		GFF1446	0.27	-0.8
1,475,082	+		GFF1446	0.36	+0.3
1,475,082	+		GFF1446	0.36	+0.3
1,475,082	+		GFF1446	0.36	-0.6
1,475,087	+		GFF1446	0.38	+0.6
1,475,090	+		GFF1446	0.39	+0.4
1,475,095	+		GFF1446	0.41	+1.2
1,475,095	+		GFF1446	0.41	+0.2
1,475,095	+		GFF1446	0.41	+0.2
1,475,095	+		GFF1446	0.41	+0.3
1,475,095	+		GFF1446	0.41	-0.3
1,475,126	+		GFF1446	0.53	-0.2
1,475,143	+		GFF1446	0.60	-0.4
1,475,146	-		GFF1446	0.61	-0.4
1,475,165	+		GFF1446	0.69	+0.0
1,475,180	-		GFF1446	0.75	+0.2
1,475,183	-		GFF1446	0.76	-2.1
1,475,183	-		GFF1446	0.76	+0.2
1,475,183	-		GFF1446	0.76	-1.0
1,475,208	-		GFF1446	0.86	-1.1
1,475,234	+				-1.3
1,475,234	+				+0.0
1,475,275	+				-0.7
1,475,298	+				+0.7
1,475,508	-				-0.3
1,475,517	+				-0.8
1,475,537	+				-1.0
1,475,547	+				-0.7
1,475,555	-				+0.4
1,475,557	+				-0.1
1,475,557	+				+0.7
1,475,561	+				-1.6
1,475,561	-				-0.2
1,475,562	+				-0.7
1,475,565	-				-0.5
1,475,572	+				+0.1
1,475,580	-				-0.3
1,475,582	+				+0.9
1,475,582	+				+0.9
1,475,592	+		GFF1448	0.11	-0.2
1,475,593	+		GFF1448	0.11	-1.7
1,475,593	+		GFF1448	0.11	-0.2
1,475,601	-		GFF1448	0.12	+0.7
1,475,605	+		GFF1448	0.13	-1.6
1,475,605	+		GFF1448	0.13	+0.8
1,475,636	-		GFF1448	0.17	+0.1
1,475,644	+		GFF1448	0.19	-0.4
1,475,657	-		GFF1448	0.21	-1.5
1,475,659	+		GFF1448	0.21	+0.0
1,475,659	+		GFF1448	0.21	-1.7
1,475,667	-		GFF1448	0.22	+0.4
1,475,667	-		GFF1448	0.22	-0.5
1,475,667	-		GFF1448	0.22	+0.6
1,475,667	-		GFF1448	0.22	+0.4
1,475,682	+		GFF1448	0.24	+0.3
1,475,690	-		GFF1448	0.26	+0.6
1,475,690	-		GFF1448	0.26	+0.5
1,475,694	+		GFF1448	0.26	+0.2
1,475,707	-		GFF1448	0.28	-1.4
1,475,732	+		GFF1448	0.32	+0.0
1,475,740	-		GFF1448	0.33	+0.4
1,475,749	+		GFF1448	0.35	+2.0
1,475,749	+		GFF1448	0.35	-0.2
1,475,749	+		GFF1448	0.35	+0.7
1,475,757	-		GFF1448	0.36	+0.3
1,475,757	-		GFF1448	0.36	-0.8
1,475,757	-		GFF1448	0.36	-0.5
1,475,757	-		GFF1448	0.36	-0.3
1,475,757	-		GFF1448	0.36	-0.6
1,475,757	-		GFF1448	0.36	-0.3
1,475,758	+		GFF1448	0.36	-0.3
1,475,781	-		GFF1448	0.40	-1.7
1,475,788	+		GFF1448	0.41	+1.1
1,475,825	+		GFF1448	0.46	-0.7
1,475,846	+		GFF1448	0.50	-1.3
1,475,849	-		GFF1448	0.50	-0.7
1,475,852	-		GFF1448	0.51	-1.8
1,475,871	-		GFF1448	0.53	-1.0
1,475,887	-		GFF1448	0.56	+0.8
1,475,890	+		GFF1448	0.56	+0.4
1,475,906	+		GFF1448	0.59	+0.9
1,475,906	-		GFF1448	0.59	+1.4
1,475,911	-		GFF1448	0.60	+0.3
1,475,911	-		GFF1448	0.60	+0.9
1,475,955	-		GFF1448	0.66	-2.3
1,475,981	+		GFF1448	0.70	-1.0
1,475,989	-		GFF1448	0.72	+0.1
1,476,009	+		GFF1448	0.75	+0.1
1,476,009	+		GFF1448	0.75	-1.7
1,476,023	+		GFF1448	0.77	-0.1
1,476,023	+		GFF1448	0.77	-0.7
1,476,023	+		GFF1448	0.77	-0.0
1,476,031	-		GFF1448	0.78	-0.7
1,476,034	+		GFF1448	0.78	-1.4
1,476,041	-		GFF1448	0.80	+0.8
1,476,042	-		GFF1448	0.80	-1.0
1,476,065	+		GFF1448	0.83	-0.9
1,476,085	-		GFF1448	0.86	-1.1
1,476,091	+		GFF1448	0.87	-1.0
1,476,100	+		GFF1448	0.89	-0.4
1,476,187	-				+0.7
1,476,193	+				-1.4
1,476,196	-				-1.0
1,476,198	+				-0.7
1,476,198	+				+0.9
1,476,198	+				-0.3
1,476,198	+				+0.2
1,476,198	+				-1.7
1,476,198	+				+0.1
1,476,198	+				+0.6
1,476,206	-				-1.6
1,476,206	-				-0.0
1,476,206	-				+0.2
1,476,206	-				+0.9
1,476,208	-				-0.4
1,476,214	+				+0.6
1,476,214	+				+0.0
1,476,214	+				-1.5
1,476,214	+				-0.3
1,476,219	+				-0.6
1,476,222	-				-1.0
1,476,222	-				-0.3
1,476,224	+				+0.5
1,476,229	+				+0.3
1,476,252	+				+0.5
1,476,260	-				+0.4
1,476,308	-				-1.8
1,476,334	-				+0.7
1,476,354	+				-0.2
1,476,354	+				+0.1
1,476,356	+				-0.3
1,476,362	-				-1.9
1,476,362	-				-1.3
1,476,383	-				+0.7
1,476,391	-				+0.6
1,476,405	+				-0.2
1,476,410	+				+0.1
1,476,410	+				+1.3
1,476,413	-				-1.5
1,476,413	-				-2.8
1,476,413	-				+0.7
1,476,413	-				+0.4
1,476,413	-				+0.3
1,476,418	-				+0.0
1,476,418	-				-0.5
1,476,418	-				+1.1
1,476,429	+				-1.0
1,476,444	-				-0.8
1,476,455	-				-0.3
1,476,464	+				+0.5
1,476,464	+				-1.7
1,476,471	-				+0.2
1,476,471	-				-0.4
1,476,471	-				+0.6
1,476,481	-				-0.2
1,476,514	+				-0.8
1,476,517	-				+0.4
1,476,528	+				-0.6
1,476,532	+				-0.3
1,476,532	+				+0.4
1,476,532	+				-2.9
1,476,540	+				-0.6
1,476,540	-				+0.0
1,476,540	-				-0.3
1,476,577	+		GFF1449	0.11	-0.3
1,476,603	-		GFF1449	0.13	+0.7
1,476,653	+		GFF1449	0.16	-1.7
1,476,653	+		GFF1449	0.16	+0.6
1,476,667	-		GFF1449	0.17	+0.5
1,476,694	-		GFF1449	0.19	-0.3
1,476,694	-		GFF1449	0.19	-1.3
1,476,709	+		GFF1449	0.20	-0.7
1,476,709	+		GFF1449	0.20	-0.4
1,476,709	+		GFF1449	0.20	-0.3
1,476,709	+		GFF1449	0.20	-0.4
1,476,717	-		GFF1449	0.21	-1.0
1,476,717	-		GFF1449	0.21	-0.7
1,476,717	-		GFF1449	0.21	-0.3
1,476,718	+		GFF1449	0.21	-0.3
1,476,718	+		GFF1449	0.21	+0.1
1,476,723	+		GFF1449	0.21	+0.7
1,476,723	+		GFF1449	0.21	-0.7
1,476,723	+		GFF1449	0.21	-0.5
1,476,728	+		GFF1449	0.21	-1.7
1,476,754	-		GFF1449	0.23	+0.7
1,476,765	+		GFF1449	0.24	-0.2
1,476,765	+		GFF1449	0.24	-0.2
1,476,770	+		GFF1449	0.24	-1.9
1,476,770	+		GFF1449	0.24	+1.6
1,476,770	+		GFF1449	0.24	+0.8
1,476,770	+		GFF1449	0.24	-0.7
1,476,773	-		GFF1449	0.25	+0.2
1,476,773	-		GFF1449	0.25	-2.5
1,476,776	+		GFF1449	0.25	-0.2
1,476,778	-		GFF1449	0.25	-0.6
1,476,822	+		GFF1449	0.28	-0.8
1,476,834	+		GFF1449	0.29	+1.8
1,476,834	+		GFF1449	0.29	-0.7
1,476,842	-		GFF1449	0.29	-0.3
1,476,847	-		GFF1449	0.30	+0.0
1,476,847	-		GFF1449	0.30	-1.4
1,476,875	+		GFF1449	0.32	-1.8
1,476,875	+		GFF1449	0.32	-2.0
1,476,875	+		GFF1449	0.32	-0.5
1,476,883	-		GFF1449	0.32	-0.3
1,476,883	-		GFF1449	0.32	-0.7
1,476,903	-		GFF1449	0.34	-0.8
1,476,934	+		GFF1449	0.36	-1.1
1,476,936	-		GFF1449	0.36	-0.2
1,476,949	-		GFF1449	0.37	+1.0
1,476,952	+		GFF1449	0.37	+2.3
1,476,960	-		GFF1449	0.38	+0.7
1,476,960	-		GFF1449	0.38	-0.1
1,476,976	-		GFF1449	0.39	-0.3
1,476,981	+		GFF1449	0.39	+0.1
1,476,981	+		GFF1449	0.39	-0.3
1,476,981	+		GFF1449	0.39	-0.8
1,476,984	-		GFF1449	0.39	-0.9
1,476,984	-		GFF1449	0.39	-0.7
1,476,989	-		GFF1449	0.40	-0.2
1,476,991	-		GFF1449	0.40	-0.3
1,476,995	-		GFF1449	0.40	-0.7
1,477,002	+		GFF1449	0.41	-0.3
1,477,020	+		GFF1449	0.42	-0.3
1,477,036	+		GFF1449	0.43	+0.7
1,477,041	+		GFF1449	0.43	-0.0
1,477,041	+		GFF1449	0.43	+0.6
1,477,083	-		GFF1449	0.46	-0.2
1,477,094	-		GFF1449	0.47	+0.3
1,477,109	-		GFF1449	0.48	+0.5
1,477,132	+		GFF1449	0.50	+0.4