Strain Fitness in Sphingobium sp. HT1-2 around GFF1436

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,464,047	+		GFF1434	0.41	-0.2
1,464,065	+		GFF1434	0.43	-0.6
1,464,065	+		GFF1434	0.43	+0.2
1,464,065	+		GFF1434	0.43	+0.7
1,464,065	+		GFF1434	0.43	+1.6
1,464,065	+		GFF1434	0.43	-1.5
1,464,073	-		GFF1434	0.44	+0.1
1,464,073	-		GFF1434	0.44	+0.3
1,464,093	+		GFF1434	0.47	-0.4
1,464,106	+		GFF1434	0.48	+1.0
1,464,117	+		GFF1434	0.49	-1.1
1,464,125	-		GFF1434	0.50	-1.5
1,464,147	-		GFF1434	0.53	-0.8
1,464,169	-		GFF1434	0.55	-0.9
1,464,205	-		GFF1434	0.60	+0.2
1,464,206	-		GFF1434	0.60	-0.6
1,464,216	+		GFF1434	0.61	-0.7
1,464,224	-		GFF1434	0.62	-0.2
1,464,226	-		GFF1434	0.62	-1.6
1,464,264	+		GFF1434	0.66	+0.6
1,464,274	-		GFF1434	0.67	-2.6
1,464,293	+		GFF1434	0.70	-1.8
1,464,294	+		GFF1434	0.70	-1.8
1,464,313	+		GFF1434	0.72	-1.3
1,464,321	+		GFF1434	0.73	-0.8
1,464,321	+		GFF1434	0.73	+0.9
1,464,321	+		GFF1434	0.73	-0.9
1,464,326	+		GFF1434	0.73	-0.0
1,464,329	-		GFF1434	0.74	+1.4
1,464,372	+		GFF1434	0.79	+1.2
1,464,419	+		GFF1434	0.84	-0.0
1,464,425	-		GFF1434	0.85	-0.5
1,464,479	+				-0.9
1,464,479	+				-1.0
1,464,479	+				+1.4
1,464,479	+				-2.1
1,464,479	+				+0.3
1,464,484	+				-0.3
1,464,487	-				-0.5
1,464,487	-				+0.7
1,464,487	-				-0.0
1,464,540	+				+0.0
1,464,542	+				-0.0
1,464,550	-				-1.2
1,464,550	-				-1.6
1,464,569	+				-0.0
1,464,593	-				-0.6
1,464,595	+				-2.1
1,464,595	+				-0.8
1,464,603	-				-1.2
1,464,603	-				-1.5
1,464,607	+				-0.8
1,464,615	-				-1.0
1,464,616	+				-0.9
1,464,634	+				-0.5
1,464,649	+				+0.2
1,464,678	+		GFF1435	0.22	-1.0
1,464,690	-		GFF1435	0.29	+1.2
1,464,697	-		GFF1435	0.34	+0.1
1,464,751	+		GFF1435	0.69	-1.2
1,464,751	+		GFF1435	0.69	+0.2
1,464,751	+		GFF1435	0.69	-0.3
1,464,751	+		GFF1435	0.69	-0.8
1,464,755	+		GFF1435	0.72	-2.1
1,464,759	-		GFF1435	0.75	+0.2
1,464,759	-		GFF1435	0.75	-0.2
1,464,759	-		GFF1435	0.75	-1.1
1,464,759	-		GFF1435	0.75	+0.2
1,464,759	-		GFF1435	0.75	-2.0
1,464,785	+				-1.0
1,464,788	-				-0.3
1,464,793	-				+0.1
1,464,798	+				-1.0
1,464,807	-				-2.3
1,464,821	+				-0.0
1,464,840	+				+0.4
1,464,842	+				-0.2
1,464,842	+				+0.8
1,464,842	+				-1.2
1,464,848	-				-1.3
1,464,850	-				-0.5
1,464,850	-				-1.0
1,464,857	-				+1.2
1,464,865	-				-0.7
1,464,872	+				-0.9
1,464,948	+				+0.1
1,464,970	-				+0.7
1,464,977	+				-1.2
1,464,985	-				+0.5
1,464,985	-				-0.4
1,464,985	-				-0.6
1,464,985	-				-0.0
1,465,017	+				-1.5
1,465,017	+				-0.7
1,465,017	-				-0.5
1,465,030	-				-0.2
1,465,030	-				-0.3
1,465,030	-				-2.7
1,465,033	+				+0.1
1,465,049	-				-0.8
1,465,051	-				-0.0
1,465,051	-				-1.1
1,465,087	+				+0.6
1,465,088	-				+0.9
1,465,095	-				-0.3
1,465,105	+		GFF1436	0.10	+0.7
1,465,118	+		GFF1436	0.12	+0.8
1,465,163	+		GFF1436	0.17	-0.9
1,465,171	-		GFF1436	0.18	+0.5
1,465,182	-		GFF1436	0.19	-1.0
1,465,182	-		GFF1436	0.19	-0.5
1,465,189	-		GFF1436	0.20	-1.9
1,465,233	-		GFF1436	0.26	-1.3
1,465,238	-		GFF1436	0.26	-0.7
1,465,249	+		GFF1436	0.27	+0.9
1,465,255	+		GFF1436	0.28	-1.3
1,465,282	-		GFF1436	0.31	+0.4
1,465,297	+		GFF1436	0.33	-1.1
1,465,301	-		GFF1436	0.34	-0.5
1,465,316	-		GFF1436	0.35	+0.4
1,465,346	+		GFF1436	0.39	+1.0
1,465,346	+		GFF1436	0.39	-1.5
1,465,346	+		GFF1436	0.39	-0.4
1,465,346	+		GFF1436	0.39	-1.2
1,465,354	-		GFF1436	0.40	+1.5
1,465,371	+		GFF1436	0.42	+0.3
1,465,371	+		GFF1436	0.42	-0.2
1,465,371	+		GFF1436	0.42	-0.6
1,465,371	+		GFF1436	0.42	-1.5
1,465,371	+		GFF1436	0.42	-1.3
1,465,371	+		GFF1436	0.42	+1.2
1,465,371	+		GFF1436	0.42	-0.1
1,465,375	+		GFF1436	0.43	-1.2
1,465,375	+		GFF1436	0.43	-0.3
1,465,376	+		GFF1436	0.43	-0.8
1,465,376	+		GFF1436	0.43	-1.3
1,465,376	+		GFF1436	0.43	-0.9
1,465,379	-		GFF1436	0.43	+0.1
1,465,379	-		GFF1436	0.43	+0.6
1,465,379	-		GFF1436	0.43	-1.0
1,465,379	-		GFF1436	0.43	-0.4
1,465,379	-		GFF1436	0.43	+0.5
1,465,379	-		GFF1436	0.43	+0.8
1,465,379	-		GFF1436	0.43	-0.3
1,465,379	-		GFF1436	0.43	-0.5
1,465,379	-		GFF1436	0.43	+1.0
1,465,379	-		GFF1436	0.43	+0.7
1,465,384	-		GFF1436	0.44	-0.7
1,465,389	-		GFF1436	0.44	-1.4
1,465,389	-		GFF1436	0.44	+0.5
1,465,389	-		GFF1436	0.44	-0.3
1,465,404	-		GFF1436	0.46	-2.3
1,465,407	+		GFF1436	0.46	-2.0
1,465,464	-		GFF1436	0.53	-1.9
1,465,489	+		GFF1436	0.56	-0.9
1,465,489	+		GFF1436	0.56	+0.5
1,465,496	-		GFF1436	0.57	-1.6
1,465,496	-		GFF1436	0.57	-1.5
1,465,510	+		GFF1436	0.59	-1.1
1,465,513	-		GFF1436	0.59	+0.6
1,465,515	+		GFF1436	0.59	-0.1
1,465,518	+		GFF1436	0.60	+0.1
1,465,518	-		GFF1436	0.60	-0.7
1,465,518	-		GFF1436	0.60	-1.6
1,465,523	-		GFF1436	0.60	-1.1
1,465,558	+		GFF1436	0.64	-0.6
1,465,558	+		GFF1436	0.64	+0.1
1,465,565	+		GFF1436	0.65	+0.4
1,465,565	+		GFF1436	0.65	+0.2
1,465,567	+		GFF1436	0.65	-1.1
1,465,567	+		GFF1436	0.65	+0.9
1,465,573	-		GFF1436	0.66	-0.6
1,465,573	-		GFF1436	0.66	-0.8
1,465,575	-		GFF1436	0.66	+0.2
1,465,575	-		GFF1436	0.66	-0.3
1,465,575	-		GFF1436	0.66	+1.0
1,465,589	+		GFF1436	0.68	-1.1
1,465,613	+		GFF1436	0.71	+0.2
1,465,621	-		GFF1436	0.72	+0.8
1,465,631	+		GFF1436	0.73	+1.5
1,465,637	+		GFF1436	0.74	-1.8
1,465,637	+		GFF1436	0.74	-0.0
1,465,642	+		GFF1436	0.74	-1.6
1,465,642	+		GFF1436	0.74	-1.6
1,465,645	-		GFF1436	0.75	+0.5
1,465,650	-		GFF1436	0.75	-0.2
1,465,650	-		GFF1436	0.75	+1.3
1,465,652	+		GFF1436	0.76	-0.0
1,465,660	-		GFF1436	0.77	-0.4
1,465,690	+		GFF1436	0.80	-1.9
1,465,700	-		GFF1436	0.81	-0.6
1,465,701	+		GFF1436	0.81	-0.0
1,465,701	+		GFF1436	0.81	+0.2
1,465,702	+		GFF1436	0.82	-1.8
1,465,709	-		GFF1436	0.82	-0.4
1,465,710	-		GFF1436	0.83	+1.4
1,465,713	+		GFF1436	0.83	-0.2
1,465,713	+		GFF1436	0.83	-0.6
1,465,721	-		GFF1436	0.84	-1.5
1,465,721	-		GFF1436	0.84	-0.2
1,465,721	-		GFF1436	0.84	-1.0
1,465,769	+		GFF1436	0.90	-0.2
1,465,777	-				-1.3
1,465,839	+				-1.5
1,465,848	-				-0.1
1,465,881	+				-0.7
1,465,928	+		GFF1437	0.15	-0.8
1,465,928	+		GFF1437	0.15	-1.5
1,465,936	-		GFF1437	0.17	+0.8
1,465,936	-		GFF1437	0.17	-1.7
1,465,971	-		GFF1437	0.27	+0.7
1,465,982	+		GFF1437	0.29	-0.9
1,466,023	-		GFF1437	0.40	-1.0
1,466,023	-		GFF1437	0.40	-2.5
1,466,074	+		GFF1437	0.54	-0.6
1,466,102	+		GFF1437	0.61	-0.8
1,466,102	+		GFF1437	0.61	+0.7
1,466,110	-		GFF1437	0.63	-0.3
1,466,110	-		GFF1437	0.63	-0.6
1,466,110	-		GFF1437	0.63	-0.1
1,466,110	-		GFF1437	0.63	+1.0
1,466,134	-		GFF1437	0.69	-1.3
1,466,177	+		GFF1437	0.81	-0.3
1,466,177	+		GFF1437	0.81	-0.1
1,466,177	+		GFF1437	0.81	+0.4
1,466,177	+		GFF1437	0.81	+1.3
1,466,185	-		GFF1437	0.83	+0.4
1,466,185	-		GFF1437	0.83	-0.8
1,466,185	-		GFF1437	0.83	-0.5
1,466,185	-		GFF1437	0.83	+1.4
1,466,185	-		GFF1437	0.83	+1.2
1,466,185	-		GFF1437	0.83	+0.6
1,466,201	-		GFF1437	0.87	+1.5
1,466,235	+				-1.2
1,466,260	+				+0.0
1,466,266	-				+0.8
1,466,266	-				-1.3
1,466,268	+				+2.1
1,466,268	+				-0.7
1,466,268	+				-2.0
1,466,268	+				-1.1
1,466,268	-				-0.1
1,466,268	-				+0.6
1,466,276	-				+0.0
1,466,283	-				-0.3
1,466,291	-				-0.4
1,466,301	+				-0.2
1,466,329	+				+0.6
1,466,329	-				+0.8
1,466,331	+				+0.2
1,466,342	+				+1.4
1,466,350	-				-0.9
1,466,350	-				-0.8
1,466,350	-				-0.7
1,466,357	+				-1.2
1,466,357	+				-1.1
1,466,365	-				-0.8
1,466,377	+				-0.5
1,466,380	-				+0.1
1,466,392	+		GFF1438	0.10	-1.3
1,466,400	-		GFF1438	0.11	-1.9
1,466,418	-		GFF1438	0.13	-1.1
1,466,418	-		GFF1438	0.13	-1.7
1,466,420	+		GFF1438	0.13	-0.2
1,466,430	+		GFF1438	0.14	-0.3
1,466,431	+		GFF1438	0.14	-1.3
1,466,438	-		GFF1438	0.14	+0.2
1,466,442	+		GFF1438	0.15	-0.7
1,466,442	+		GFF1438	0.15	-0.8
1,466,450	-		GFF1438	0.16	-1.1
1,466,463	+		GFF1438	0.17	-2.0
1,466,515	-		GFF1438	0.21	-0.4
1,466,532	-		GFF1438	0.23	-1.6
1,466,575	-		GFF1438	0.27	-0.3
1,466,581	+		GFF1438	0.27	+0.5
1,466,582	+		GFF1438	0.27	-1.8
1,466,587	-		GFF1438	0.28	-0.7
1,466,607	+		GFF1438	0.30	-1.1
1,466,607	+		GFF1438	0.30	-0.2
1,466,613	-		GFF1438	0.30	-0.8
1,466,615	-		GFF1438	0.30	+0.7
1,466,654	+		GFF1438	0.34	+0.1
1,466,657	+		GFF1438	0.34	-2.7
1,466,664	+		GFF1438	0.35	-0.7
1,466,664	+		GFF1438	0.35	+0.4
1,466,665	-		GFF1438	0.35	-0.0
1,466,672	-		GFF1438	0.35	+1.2
1,466,696	+		GFF1438	0.38	-0.9
1,466,704	-		GFF1438	0.38	+0.5
1,466,704	-		GFF1438	0.38	+1.5
1,466,704	-		GFF1438	0.38	+0.6
1,466,709	+		GFF1438	0.39	-1.3
1,466,709	+		GFF1438	0.39	-1.5
1,466,709	+		GFF1438	0.39	-1.8
1,466,709	+		GFF1438	0.39	-2.2
1,466,728	+		GFF1438	0.41	-2.6
1,466,728	+		GFF1438	0.41	+0.5
1,466,736	-		GFF1438	0.41	-0.7
1,466,763	+		GFF1438	0.44	-1.0
1,466,763	+		GFF1438	0.44	-1.0
1,466,763	+		GFF1438	0.44	+0.4
1,466,763	+		GFF1438	0.44	-1.1
1,466,763	+		GFF1438	0.44	-1.4
1,466,771	-		GFF1438	0.44	-2.2
1,466,780	+		GFF1438	0.45	-2.3
1,466,784	-		GFF1438	0.46	-0.0
1,466,786	+		GFF1438	0.46	-0.6
1,466,786	+		GFF1438	0.46	+0.6
1,466,786	+		GFF1438	0.46	+1.1
1,466,794	-		GFF1438	0.46	-0.2
1,466,800	-		GFF1438	0.47	-0.3
1,466,814	+		GFF1438	0.48	+0.1
1,466,827	+		GFF1438	0.49	-0.3
1,466,832	+		GFF1438	0.50	-0.1
1,466,840	+		GFF1438	0.51	-0.3
1,466,842	-		GFF1438	0.51	+0.1
1,466,848	+		GFF1438	0.51	-0.1
1,466,848	-		GFF1438	0.51	-0.3