Strain Fitness in Sphingobium sp. HT1-2 around GFF1410

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,438,069	+		GFF1409	0.23	-0.1
1,438,069	+		GFF1409	0.23	+0.1
1,438,077	-		GFF1409	0.24	-1.1
1,438,077	-		GFF1409	0.24	-0.1
1,438,095	+		GFF1409	0.25	-2.1
1,438,103	-		GFF1409	0.26	+0.3
1,438,106	+		GFF1409	0.26	-0.6
1,438,111	+		GFF1409	0.27	+0.1
1,438,111	+		GFF1409	0.27	-0.9
1,438,121	+		GFF1409	0.27	+0.9
1,438,135	+		GFF1409	0.28	-0.2
1,438,146	-		GFF1409	0.29	-1.8
1,438,165	+		GFF1409	0.31	-0.1
1,438,195	-		GFF1409	0.33	+1.0
1,438,196	-		GFF1409	0.33	+0.3
1,438,197	+		GFF1409	0.33	+0.2
1,438,235	+		GFF1409	0.36	+0.4
1,438,247	-		GFF1409	0.37	-0.6
1,438,263	-		GFF1409	0.38	-0.9
1,438,265	+		GFF1409	0.38	-1.7
1,438,266	+		GFF1409	0.38	-0.3
1,438,272	+		GFF1409	0.39	-0.6
1,438,273	-		GFF1409	0.39	-0.2
1,438,274	-		GFF1409	0.39	+0.3
1,438,274	-		GFF1409	0.39	+0.4
1,438,303	-		GFF1409	0.41	+0.0
1,438,309	-		GFF1409	0.42	+0.4
1,438,310	+		GFF1409	0.42	-2.7
1,438,310	+		GFF1409	0.42	-0.4
1,438,317	+		GFF1409	0.42	-1.5
1,438,329	-		GFF1409	0.43	-0.2
1,438,344	-		GFF1409	0.44	-0.1
1,438,351	-		GFF1409	0.45	-2.7
1,438,351	-		GFF1409	0.45	-0.9
1,438,379	+		GFF1409	0.47	+0.4
1,438,387	+		GFF1409	0.48	-1.3
1,438,407	+		GFF1409	0.49	+0.1
1,438,407	+		GFF1409	0.49	-1.6
1,438,432	+		GFF1409	0.51	-0.3
1,438,496	+		GFF1409	0.56	-0.3
1,438,499	-		GFF1409	0.56	-2.1
1,438,504	-		GFF1409	0.57	-0.9
1,438,523	+		GFF1409	0.58	+0.0
1,438,523	+		GFF1409	0.58	+0.8
1,438,526	-		GFF1409	0.58	-0.6
1,438,531	-		GFF1409	0.59	-0.8
1,438,533	+		GFF1409	0.59	-1.2
1,438,541	-		GFF1409	0.59	-0.2
1,438,546	+		GFF1409	0.60	+1.0
1,438,547	+		GFF1409	0.60	+1.0
1,438,547	+		GFF1409	0.60	-0.1
1,438,547	+		GFF1409	0.60	-0.3
1,438,548	+		GFF1409	0.60	+0.3
1,438,548	+		GFF1409	0.60	-0.8
1,438,548	+		GFF1409	0.60	-0.3
1,438,548	+		GFF1409	0.60	-0.6
1,438,555	-		GFF1409	0.61	-0.5
1,438,555	-		GFF1409	0.61	-0.5
1,438,555	-		GFF1409	0.61	-0.0
1,438,555	-		GFF1409	0.61	+1.1
1,438,555	-		GFF1409	0.61	-0.5
1,438,555	-		GFF1409	0.61	-1.2
1,438,555	-		GFF1409	0.61	-1.2
1,438,555	-		GFF1409	0.61	-1.9
1,438,555	-		GFF1409	0.61	-0.8
1,438,555	-		GFF1409	0.61	-0.0
1,438,555	-		GFF1409	0.61	-0.1
1,438,556	-		GFF1409	0.61	+1.0
1,438,556	-		GFF1409	0.61	-0.5
1,438,556	-		GFF1409	0.61	-0.3
1,438,558	+		GFF1409	0.61	-0.6
1,438,563	+		GFF1409	0.61	+0.6
1,438,570	+		GFF1409	0.62	+1.4
1,438,606	+		GFF1409	0.64	-0.3
1,438,614	+		GFF1409	0.65	-0.5
1,438,616	+		GFF1409	0.65	-0.3
1,438,624	-		GFF1409	0.66	-0.4
1,438,653	-		GFF1409	0.68	-0.7
1,438,656	+		GFF1409	0.68	-0.1
1,438,692	-		GFF1409	0.71	-1.1
1,438,707	+		GFF1409	0.72	-1.6
1,438,707	+		GFF1409	0.72	-1.8
1,438,718	-		GFF1409	0.73	+0.3
1,438,764	-		GFF1409	0.77	+1.0
1,438,779	+		GFF1409	0.78	+0.6
1,438,785	+		GFF1409	0.78	-0.5
1,438,785	+		GFF1409	0.78	+1.2
1,438,787	-		GFF1409	0.78	-0.8
1,438,795	+		GFF1409	0.79	-2.2
1,438,795	+		GFF1409	0.79	+1.5
1,438,803	-		GFF1409	0.80	-0.1
1,438,803	-		GFF1409	0.80	+0.9
1,438,809	-		GFF1409	0.80	-0.2
1,438,840	+		GFF1409	0.82	+0.7
1,438,840	+		GFF1409	0.82	-0.7
1,438,840	+		GFF1409	0.82	-0.6
1,438,841	-		GFF1409	0.82	+1.2
1,438,897	-		GFF1409	0.87	+0.5
1,438,903	+		GFF1409	0.87	+0.3
1,438,911	-		GFF1409	0.88	-0.9
1,438,911	-		GFF1409	0.88	-0.7
1,438,914	+		GFF1409	0.88	-0.3
1,438,916	-		GFF1409	0.88	+1.1
1,438,925	+		GFF1409	0.89	+0.5
1,438,925	+		GFF1409	0.89	-0.2
1,438,930	-		GFF1409	0.89	-0.8
1,438,933	-		GFF1409	0.90	+0.0
1,438,933	-		GFF1409	0.90	+0.0
1,438,942	+				-0.1
1,438,965	-				-1.0
1,438,993	-				-1.0
1,438,993	-				+0.4
1,439,004	-				-1.1
1,439,019	-				-1.2
1,439,041	+				-1.1
1,439,049	-				+0.5
1,439,049	-				-2.0
1,439,058	+				-0.9
1,439,063	+				+0.0
1,439,063	+				+0.4
1,439,063	+				-0.5
1,439,071	-				+0.0
1,439,071	-				+0.4
1,439,071	-				+0.4
1,439,078	+				-0.8
1,439,078	+				-2.5
1,439,086	-				-1.1
1,439,094	-				-0.9
1,439,095	+				+0.2
1,439,103	-				+0.4
1,439,103	-				-2.3
1,439,123	-				-0.1
1,439,126	-				+0.6
1,439,164	-				-0.4
1,439,167	+		GFF1410	0.10	-0.6
1,439,183	+		GFF1410	0.12	-0.5
1,439,197	+		GFF1410	0.13	-0.3
1,439,207	+		GFF1410	0.14	+0.6
1,439,306	-		GFF1410	0.24	-0.3
1,439,306	-		GFF1410	0.24	+0.7
1,439,342	+		GFF1410	0.27	-0.3
1,439,352	+		GFF1410	0.28	-1.1
1,439,354	+		GFF1410	0.28	-0.6
1,439,365	+		GFF1410	0.30	-0.2
1,439,369	+		GFF1410	0.30	+1.2
1,439,398	-		GFF1410	0.33	+1.4
1,439,405	+		GFF1410	0.34	-1.8
1,439,405	+		GFF1410	0.34	-1.5
1,439,405	+		GFF1410	0.34	-0.6
1,439,405	+		GFF1410	0.34	-0.2
1,439,405	+		GFF1410	0.34	-0.2
1,439,408	-		GFF1410	0.34	-0.0
1,439,415	+		GFF1410	0.35	-1.5
1,439,475	+		GFF1410	0.40	-0.3
1,439,512	-		GFF1410	0.44	+0.7
1,439,524	-		GFF1410	0.45	-1.6
1,439,527	+		GFF1410	0.46	-0.0
1,439,546	+		GFF1410	0.47	-1.7
1,439,548	+		GFF1410	0.48	+1.1
1,439,556	-		GFF1410	0.48	-0.6
1,439,556	-		GFF1410	0.48	-0.5
1,439,558	+		GFF1410	0.49	+0.9
1,439,558	+		GFF1410	0.49	-1.2
1,439,560	+		GFF1410	0.49	+0.9
1,439,561	-		GFF1410	0.49	-0.2
1,439,566	-		GFF1410	0.49	+0.3
1,439,566	-		GFF1410	0.49	-0.7
1,439,566	-		GFF1410	0.49	+0.6
1,439,566	-		GFF1410	0.49	+0.1
1,439,640	-		GFF1410	0.57	-0.6
1,439,646	+		GFF1410	0.57	-1.4
1,439,646	+		GFF1410	0.57	-0.2
1,439,654	-		GFF1410	0.58	-1.6
1,439,654	-		GFF1410	0.58	+0.5
1,439,654	-		GFF1410	0.58	+0.2
1,439,667	+		GFF1410	0.59	+0.4
1,439,671	+		GFF1410	0.60	-0.1
1,439,679	+		GFF1410	0.61	-0.1
1,439,679	-		GFF1410	0.61	-2.9
1,439,693	-		GFF1410	0.62	-0.4
1,439,703	-		GFF1410	0.63	-1.0
1,439,706	+		GFF1410	0.63	-0.1
1,439,706	+		GFF1410	0.63	+0.2
1,439,725	+		GFF1410	0.65	-0.4
1,439,732	+		GFF1410	0.66	+2.0
1,439,733	-		GFF1410	0.66	-1.7
1,439,740	-		GFF1410	0.67	-0.0
1,439,740	-		GFF1410	0.67	-0.4
1,439,740	-		GFF1410	0.67	+1.1
1,439,740	-		GFF1410	0.67	-0.3
1,439,740	-		GFF1410	0.67	-0.8
1,439,745	+		GFF1410	0.67	+0.5
1,439,747	+		GFF1410	0.67	-0.1
1,439,747	+		GFF1410	0.67	+1.1
1,439,752	+		GFF1410	0.68	-1.0
1,439,752	+		GFF1410	0.68	-0.2
1,439,752	+		GFF1410	0.68	-0.2
1,439,752	+		GFF1410	0.68	-2.6
1,439,752	+		GFF1410	0.68	-0.3
1,439,760	-		GFF1410	0.69	-0.9
1,439,760	-		GFF1410	0.69	+1.4
1,439,760	-		GFF1410	0.69	+0.7
1,439,768	-		GFF1410	0.69	+0.6
1,439,770	-		GFF1410	0.70	-0.1
1,439,782	+		GFF1410	0.71	+0.5
1,439,782	+		GFF1410	0.71	-1.0
1,439,782	+		GFF1410	0.71	-0.9
1,439,785	-		GFF1410	0.71	+1.4
1,439,788	+		GFF1410	0.71	+0.8
1,439,790	-		GFF1410	0.72	+0.4
1,439,790	-		GFF1410	0.72	-0.9
1,439,790	-		GFF1410	0.72	-0.8
1,439,790	-		GFF1410	0.72	-1.3
1,439,793	+		GFF1410	0.72	-1.5
1,439,793	+		GFF1410	0.72	-0.5
1,439,793	+		GFF1410	0.72	+1.1
1,439,793	+		GFF1410	0.72	+0.2
1,439,793	+		GFF1410	0.72	-0.0
1,439,793	+		GFF1410	0.72	-1.1
1,439,793	+		GFF1410	0.72	+0.9
1,439,793	+		GFF1410	0.72	+0.6
1,439,793	+		GFF1410	0.72	-0.4
1,439,793	+		GFF1410	0.72	-2.5
1,439,793	+		GFF1410	0.72	-1.6
1,439,793	+		GFF1410	0.72	-0.2
1,439,796	-		GFF1410	0.72	+1.1
1,439,797	-		GFF1410	0.72	-0.4
1,439,798	+		GFF1410	0.72	-0.0
1,439,798	+		GFF1410	0.72	+0.4
1,439,798	+		GFF1410	0.72	-2.1
1,439,801	-		GFF1410	0.73	-2.0
1,439,801	-		GFF1410	0.73	+1.0
1,439,801	-		GFF1410	0.73	-0.6
1,439,801	-		GFF1410	0.73	+0.2
1,439,801	-		GFF1410	0.73	-0.4
1,439,801	-		GFF1410	0.73	+0.6
1,439,801	-		GFF1410	0.73	-0.2
1,439,803	+		GFF1410	0.73	-0.1
1,439,806	-		GFF1410	0.73	-0.1
1,439,806	-		GFF1410	0.73	-1.3
1,439,806	-		GFF1410	0.73	-0.4
1,439,811	-		GFF1410	0.74	+0.1
1,439,811	-		GFF1410	0.74	+1.0
1,439,811	-		GFF1410	0.74	-1.9
1,439,834	+		GFF1410	0.76	-0.8
1,439,834	+		GFF1410	0.76	+0.9
1,439,834	+		GFF1410	0.76	+0.7
1,439,834	+		GFF1410	0.76	+0.4
1,439,834	+		GFF1410	0.76	+0.8
1,439,836	+		GFF1410	0.76	+0.6
1,439,842	-		GFF1410	0.77	-0.3
1,439,842	-		GFF1410	0.77	-0.3
1,439,842	-		GFF1410	0.77	-1.1
1,439,842	-		GFF1410	0.77	-1.2
1,439,842	-		GFF1410	0.77	+0.4
1,439,842	-		GFF1410	0.77	+0.2
1,439,863	-		GFF1410	0.79	-0.9
1,439,865	+		GFF1410	0.79	-0.5
1,439,870	+		GFF1410	0.80	+0.4
1,439,873	-		GFF1410	0.80	+0.7
1,439,881	-		GFF1410	0.81	-1.8
1,439,881	-		GFF1410	0.81	-1.3
1,439,881	-		GFF1410	0.81	+0.1
1,439,893	+		GFF1410	0.82	+0.6
1,439,901	-		GFF1410	0.83	-0.9
1,439,901	-		GFF1410	0.83	+0.3
1,439,901	-		GFF1410	0.83	+0.6
1,439,902	-		GFF1410	0.83	+0.4
1,439,903	+		GFF1410	0.83	-0.1
1,439,903	+		GFF1410	0.83	+1.0
1,439,903	+		GFF1410	0.83	-0.5
1,439,927	-		GFF1410	0.85	+1.2
1,439,932	+		GFF1410	0.86	-0.6
1,439,951	-		GFF1410	0.88	-0.0
1,439,953	+		GFF1410	0.88	+1.1
1,439,958	+		GFF1410	0.88	-1.8
1,439,958	+		GFF1410	0.88	+0.6
1,439,961	-		GFF1410	0.89	-0.9
1,439,966	-		GFF1410	0.89	+0.2
1,439,987	+				+0.3
1,439,993	-				+0.4
1,439,999	+				-0.2
1,440,020	+				+1.4
1,440,024	-				+0.0
1,440,025	+				+1.3
1,440,025	+				-0.5
1,440,028	-				-1.3
1,440,033	-				+0.1
1,440,033	-				+0.5
1,440,033	-				-0.2
1,440,033	-				-1.7
1,440,049	-				-1.4
1,440,055	-				-1.3
1,440,083	+				-2.4
1,440,083	+				-0.8
1,440,083	+				-2.0
1,440,083	+				+0.8
1,440,091	-				-0.6
1,440,091	-				-0.6
1,440,093	+				+0.4
1,440,102	+				-1.2
1,440,102	+				-1.3
1,440,102	-				-0.9
1,440,113	-				-0.8
1,440,127	+				+1.1
1,440,130	+				+0.4
1,440,132	+				-0.8
1,440,143	+				-1.2
1,440,151	-				+0.1
1,440,151	-				-0.4
1,440,164	+				+0.7
1,440,213	+		GFF1411	0.12	+0.1
1,440,215	+		GFF1411	0.12	+0.0
1,440,215	+		GFF1411	0.12	+1.0
1,440,234	+		GFF1411	0.13	-0.2
1,440,238	+		GFF1411	0.14	+1.1
1,440,246	-		GFF1411	0.14	+0.2
1,440,251	-		GFF1411	0.15	+0.8
1,440,258	+		GFF1411	0.15	-0.9
1,440,258	+		GFF1411	0.15	+0.2
1,440,258	+		GFF1411	0.15	-0.0
1,440,260	-		GFF1411	0.16	-0.6
1,440,268	-		GFF1411	0.16	+0.5
1,440,270	+		GFF1411	0.16	-2.0
1,440,281	+		GFF1411	0.17	-1.0
1,440,281	+		GFF1411	0.17	-0.8
1,440,281	+		GFF1411	0.17	+1.1
1,440,281	+		GFF1411	0.17	-3.3
1,440,281	+		GFF1411	0.17	-0.5
1,440,281	+		GFF1411	0.17	-0.4
1,440,281	+		GFF1411	0.17	+0.7
1,440,281	+		GFF1411	0.17	-0.3
1,440,281	+		GFF1411	0.17	-1.4
1,440,281	+		GFF1411	0.17	-0.5
1,440,281	+		GFF1411	0.17	+0.5
1,440,281	+		GFF1411	0.17	-0.2
1,440,281	+		GFF1411	0.17	-0.1
1,440,281	+		GFF1411	0.17	-0.6
1,440,281	+		GFF1411	0.17	-1.0
1,440,281	+		GFF1411	0.17	-0.6
1,440,281	+		GFF1411	0.17	-1.7
1,440,281	+		GFF1411	0.17	-0.5
1,440,281	+		GFF1411	0.17	-1.5
1,440,281	+		GFF1411	0.17	-0.1
1,440,281	+		GFF1411	0.17	-0.4
1,440,283	-		GFF1411	0.18	-0.2
1,440,289	-		GFF1411	0.18	-0.5
1,440,289	-		GFF1411	0.18	-0.3
1,440,289	-		GFF1411	0.18	-0.5
1,440,289	-		GFF1411	0.18	-0.2
1,440,289	-		GFF1411	0.18	-1.6
1,440,289	-		GFF1411	0.18	+0.3
1,440,289	-		GFF1411	0.18	-2.1
1,440,289	-		GFF1411	0.18	-0.4
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