Strain Fitness in Sphingobium sp. HT1-2 around GFF1401

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,426,097	+		GFF1399	0.66	+0.7
1,426,103	+		GFF1399	0.66	+1.3
1,426,104	-		GFF1399	0.66	-2.9
1,426,105	-		GFF1399	0.66	-0.6
1,426,105	-		GFF1399	0.66	-0.9
1,426,109	-		GFF1399	0.67	+0.3
1,426,117	+		GFF1399	0.68	-1.3
1,426,127	+		GFF1399	0.69	-0.3
1,426,161	-		GFF1399	0.72	+0.2
1,426,164	-		GFF1399	0.72	+0.2
1,426,219	-		GFF1399	0.78	-1.6
1,426,235	+		GFF1399	0.80	+1.1
1,426,235	+		GFF1399	0.80	-0.3
1,426,235	+		GFF1399	0.80	-2.0
1,426,235	+		GFF1399	0.80	+0.2
1,426,243	-		GFF1399	0.81	+0.9
1,426,268	+		GFF1399	0.83	-0.6
1,426,268	+		GFF1399	0.83	+0.3
1,426,268	+		GFF1399	0.83	+0.2
1,426,276	-		GFF1399	0.84	+0.1
1,426,276	-		GFF1399	0.84	-1.3
1,426,276	-		GFF1399	0.84	-1.3
1,426,276	-		GFF1399	0.84	-0.4
1,426,276	-		GFF1399	0.84	-1.4
1,426,276	-		GFF1399	0.84	+0.5
1,426,296	-		GFF1399	0.86	+0.4
1,426,324	-		GFF1399	0.89	-0.4
1,426,350	-				+0.7
1,426,350	-				-2.0
1,426,350	-				+0.7
1,426,352	+				+0.3
1,426,352	+				-0.8
1,426,352	+				+0.6
1,426,360	-				+0.5
1,426,360	-				+0.9
1,426,384	+				-1.7
1,426,394	-				-1.4
1,426,420	-				+0.1
1,426,420	-				-0.1
1,426,443	+				+0.3
1,426,505	+				-0.8
1,426,505	+				-1.6
1,426,513	+		GFF1400	0.11	-0.9
1,426,513	-		GFF1400	0.11	+1.0
1,426,513	-		GFF1400	0.11	-0.2
1,426,521	-		GFF1400	0.12	+1.3
1,426,532	-		GFF1400	0.14	+1.0
1,426,553	-		GFF1400	0.17	-0.2
1,426,563	-		GFF1400	0.18	+0.1
1,426,563	-		GFF1400	0.18	-0.7
1,426,563	-		GFF1400	0.18	-0.3
1,426,567	-		GFF1400	0.19	+0.3
1,426,567	-		GFF1400	0.19	-1.1
1,426,567	-		GFF1400	0.19	+0.6
1,426,568	-		GFF1400	0.19	+0.4
1,426,594	+		GFF1400	0.23	-0.7
1,426,602	+		GFF1400	0.24	-0.5
1,426,602	-		GFF1400	0.24	-0.2
1,426,652	-		GFF1400	0.32	-0.1
1,426,654	-		GFF1400	0.33	-0.4
1,426,669	+		GFF1400	0.35	-0.6
1,426,680	+		GFF1400	0.37	-0.7
1,426,695	+		GFF1400	0.39	-1.6
1,426,716	+		GFF1400	0.42	-0.5
1,426,716	+		GFF1400	0.42	-1.2
1,426,724	-		GFF1400	0.43	+0.9
1,426,724	-		GFF1400	0.43	-2.3
1,426,737	+		GFF1400	0.45	-1.0
1,426,745	-		GFF1400	0.47	+0.3
1,426,753	+		GFF1400	0.48	-0.4
1,426,754	+		GFF1400	0.48	+0.5
1,426,787	+		GFF1400	0.53	+1.3
1,426,829	-		GFF1400	0.60	+0.4
1,426,835	+		GFF1400	0.61	-1.8
1,426,854	+		GFF1400	0.64	+1.8
1,426,892	+		GFF1400	0.70	-1.4
1,426,911	+		GFF1400	0.73	+0.1
1,426,911	+		GFF1400	0.73	-0.4
1,426,911	+		GFF1400	0.73	+0.6
1,426,911	+		GFF1400	0.73	-1.9
1,426,911	+		GFF1400	0.73	+1.3
1,426,911	+		GFF1400	0.73	-1.7
1,426,911	+		GFF1400	0.73	-0.1
1,426,911	+		GFF1400	0.73	-0.6
1,426,914	-		GFF1400	0.73	+1.0
1,426,919	-		GFF1400	0.74	-0.6
1,426,919	-		GFF1400	0.74	-2.7
1,426,919	-		GFF1400	0.74	-0.3
1,426,934	-		GFF1400	0.76	-0.6
1,426,936	+		GFF1400	0.76	-0.4
1,426,965	+		GFF1400	0.81	-0.7
1,426,965	+		GFF1400	0.81	+0.4
1,426,990	-		GFF1400	0.85	+0.2
1,427,041	-				-0.2
1,427,050	-				+0.4
1,427,051	+				+1.4
1,427,072	+				+0.4
1,427,088	-				-0.1
1,427,118	+				+0.3
1,427,123	+				+0.8
1,427,131	-				-0.4
1,427,150	-				+0.2
1,427,157	+				+1.3
1,427,157	+				+0.7
1,427,157	+				-0.1
1,427,157	+				-0.2
1,427,157	+				+0.8
1,427,157	+				-3.2
1,427,157	+				+0.0
1,427,157	+				-1.4
1,427,165	-				-0.8
1,427,170	+				-0.0
1,427,176	-				-1.4
1,427,180	+				+0.0
1,427,186	-				-0.4
1,427,188	-				+0.1
1,427,194	+		GFF1401	0.10	-2.3
1,427,194	+		GFF1401	0.10	-1.3
1,427,202	-		GFF1401	0.11	-0.2
1,427,202	-		GFF1401	0.11	-1.5
1,427,212	+		GFF1401	0.12	-0.1
1,427,212	+		GFF1401	0.12	+1.1
1,427,212	+		GFF1401	0.12	+0.2
1,427,219	+		GFF1401	0.13	-1.7
1,427,225	-		GFF1401	0.13	+0.4
1,427,225	-		GFF1401	0.13	+0.6
1,427,225	-		GFF1401	0.13	-1.2
1,427,227	-		GFF1401	0.14	-0.2
1,427,227	-		GFF1401	0.14	+0.6
1,427,230	+		GFF1401	0.14	+0.0
1,427,230	+		GFF1401	0.14	-0.8
1,427,230	+		GFF1401	0.14	+0.1
1,427,230	+		GFF1401	0.14	-0.7
1,427,230	+		GFF1401	0.14	-0.7
1,427,233	-		GFF1401	0.14	+0.9
1,427,238	-		GFF1401	0.15	-1.4
1,427,238	-		GFF1401	0.15	-1.3
1,427,238	-		GFF1401	0.15	-1.4
1,427,238	-		GFF1401	0.15	-0.3
1,427,238	-		GFF1401	0.15	+0.9
1,427,273	+		GFF1401	0.18	-1.2
1,427,274	+		GFF1401	0.18	+0.8
1,427,281	-		GFF1401	0.19	+0.4
1,427,289	-		GFF1401	0.20	+0.1
1,427,291	+		GFF1401	0.20	-0.1
1,427,299	-		GFF1401	0.21	-0.7
1,427,318	+		GFF1401	0.23	-0.7
1,427,326	-		GFF1401	0.24	+0.7
1,427,328	-		GFF1401	0.24	-1.2
1,427,341	+		GFF1401	0.25	-1.4
1,427,347	-		GFF1401	0.26	-1.1
1,427,347	-		GFF1401	0.26	-0.7
1,427,347	-		GFF1401	0.26	+1.7
1,427,349	+		GFF1401	0.26	-0.7
1,427,349	+		GFF1401	0.26	-0.4
1,427,349	+		GFF1401	0.26	+0.3
1,427,349	+		GFF1401	0.26	-2.0
1,427,349	+		GFF1401	0.26	-0.1
1,427,349	+		GFF1401	0.26	-0.7
1,427,355	-		GFF1401	0.26	+0.5
1,427,357	-		GFF1401	0.27	+0.8
1,427,357	-		GFF1401	0.27	-0.0
1,427,357	-		GFF1401	0.27	+0.6
1,427,357	-		GFF1401	0.27	-0.5
1,427,357	-		GFF1401	0.27	+0.1
1,427,357	-		GFF1401	0.27	-0.9
1,427,357	-		GFF1401	0.27	-0.7
1,427,357	-		GFF1401	0.27	+0.4
1,427,363	+		GFF1401	0.27	+0.0
1,427,376	-		GFF1401	0.28	-0.9
1,427,418	-		GFF1401	0.33	-0.3
1,427,432	+		GFF1401	0.34	-0.4
1,427,441	-		GFF1401	0.35	-1.1
1,427,453	+		GFF1401	0.36	+0.4
1,427,501	+		GFF1401	0.41	-0.1
1,427,501	+		GFF1401	0.41	+1.1
1,427,501	+		GFF1401	0.41	+0.0
1,427,501	+		GFF1401	0.41	+0.0
1,427,501	+		GFF1401	0.41	+0.4
1,427,501	+		GFF1401	0.41	-0.5
1,427,501	+		GFF1401	0.41	+0.7
1,427,501	+		GFF1401	0.41	-0.6
1,427,501	+		GFF1401	0.41	+0.4
1,427,501	+		GFF1401	0.41	+0.3
1,427,501	+		GFF1401	0.41	-1.4
1,427,501	+		GFF1401	0.41	-2.4
1,427,507	-		GFF1401	0.41	-1.3
1,427,509	-		GFF1401	0.42	-0.5
1,427,509	-		GFF1401	0.42	+0.4
1,427,509	-		GFF1401	0.42	+0.3
1,427,509	-		GFF1401	0.42	-0.3
1,427,509	-		GFF1401	0.42	+0.5
1,427,509	-		GFF1401	0.42	-0.6
1,427,509	-		GFF1401	0.42	-0.3
1,427,509	-		GFF1401	0.42	+1.2
1,427,509	-		GFF1401	0.42	+0.3
1,427,511	+		GFF1401	0.42	-0.1
1,427,511	+		GFF1401	0.42	-0.8
1,427,512	+		GFF1401	0.42	+0.2
1,427,520	+		GFF1401	0.43	-0.2
1,427,528	-		GFF1401	0.44	+0.2
1,427,528	-		GFF1401	0.44	+0.0
1,427,549	-		GFF1401	0.46	-0.5
1,427,554	-		GFF1401	0.46	-1.6
1,427,557	-		GFF1401	0.46	-0.2
1,427,559	-		GFF1401	0.47	+0.4
1,427,621	+		GFF1401	0.53	-0.6
1,427,643	+		GFF1401	0.55	+0.1
1,427,674	+		GFF1401	0.58	-2.6
1,427,675	+		GFF1401	0.58	-0.3
1,427,675	+		GFF1401	0.58	-0.4
1,427,675	+		GFF1401	0.58	+0.1
1,427,675	+		GFF1401	0.58	-0.9
1,427,675	+		GFF1401	0.58	-2.3
1,427,675	+		GFF1401	0.58	-0.3
1,427,675	+		GFF1401	0.58	+0.7
1,427,675	+		GFF1401	0.58	+0.3
1,427,675	+		GFF1401	0.58	-1.4
1,427,678	-		GFF1401	0.58	-1.3
1,427,683	-		GFF1401	0.59	-0.1
1,427,683	-		GFF1401	0.59	-0.4
1,427,683	-		GFF1401	0.59	+1.0
1,427,683	-		GFF1401	0.59	-3.2
1,427,683	-		GFF1401	0.59	-0.3
1,427,683	-		GFF1401	0.59	-1.7
1,427,683	-		GFF1401	0.59	-0.4
1,427,683	-		GFF1401	0.59	-1.8
1,427,685	+		GFF1401	0.59	+1.0
1,427,693	-		GFF1401	0.60	+0.6
1,427,693	-		GFF1401	0.60	-0.1
1,427,695	+		GFF1401	0.60	-0.7
1,427,729	+		GFF1401	0.63	+1.1
1,427,746	-		GFF1401	0.65	+1.3
1,427,763	+		GFF1401	0.67	-1.1
1,427,773	-		GFF1401	0.68	+0.8
1,427,773	-		GFF1401	0.68	-1.4
1,427,787	+		GFF1401	0.69	-1.6
1,427,793	-		GFF1401	0.70	-2.0
1,427,812	+		GFF1401	0.72	-0.3
1,427,812	+		GFF1401	0.72	+1.5
1,427,820	-		GFF1401	0.73	-0.1
1,427,858	+		GFF1401	0.76	+0.5
1,427,858	+		GFF1401	0.76	-0.8
1,427,866	-		GFF1401	0.77	+0.2
1,427,866	-		GFF1401	0.77	-2.6
1,427,866	-		GFF1401	0.77	+0.3
1,427,885	-		GFF1401	0.79	+0.6
1,427,925	+		GFF1401	0.83	-0.3
1,427,925	+		GFF1401	0.83	-0.1
1,427,925	+		GFF1401	0.83	-0.2
1,427,927	+		GFF1401	0.83	+0.9
1,427,945	-		GFF1401	0.85	-0.2
1,427,965	-		GFF1401	0.87	-1.3
1,427,972	+		GFF1401	0.88	-0.2
1,427,979	+		GFF1401	0.88	+0.5
1,427,987	-		GFF1401	0.89	+0.7
1,428,005	+				-0.7
1,428,005	-				+0.7
1,428,026	+				-1.0
1,428,029	+				-1.4
1,428,036	+				-1.0
1,428,039	-				+0.3
1,428,098	-				+0.5
1,428,148	-				+0.0
1,428,166	+				+0.6
1,428,189	+				+1.3
1,428,197	+				+0.7
1,428,205	-				-0.3
1,428,230	+				+0.6
1,428,233	-				+1.4
1,428,250	-				-1.6
1,428,250	-				-0.3
1,428,289	-				-1.9
1,428,291	-				+1.6
1,428,294	+				-0.3
1,428,295	+				+0.1
1,428,315	-				-0.8
1,428,387	+		GFF1402	0.11	-0.8
1,428,387	+		GFF1402	0.11	-2.4
1,428,389	+		GFF1402	0.11	-0.6
1,428,389	+		GFF1402	0.11	+0.4
1,428,389	+		GFF1402	0.11	+1.4
1,428,394	+		GFF1402	0.11	-1.3
1,428,395	-		GFF1402	0.11	-0.7
1,428,397	-		GFF1402	0.11	-0.9
1,428,398	+		GFF1402	0.11	-0.6
1,428,424	-		GFF1402	0.12	-1.4
1,428,429	-		GFF1402	0.12	-0.6
1,428,458	+		GFF1402	0.14	-1.9
1,428,463	+		GFF1402	0.14	-1.2
1,428,468	+		GFF1402	0.14	-0.5
1,428,468	+		GFF1402	0.14	-0.6
1,428,470	+		GFF1402	0.14	-0.2
1,428,487	+		GFF1402	0.15	-1.0
1,428,500	+		GFF1402	0.15	-0.4
1,428,514	-		GFF1402	0.16	+0.3
1,428,520	+		GFF1402	0.16	+0.5
1,428,530	+		GFF1402	0.17	-0.3
1,428,557	-		GFF1402	0.18	-0.1
1,428,572	+		GFF1402	0.18	-1.4
1,428,572	+		GFF1402	0.18	-0.2
1,428,580	-		GFF1402	0.19	+1.0
1,428,581	+		GFF1402	0.19	+0.7
1,428,581	+		GFF1402	0.19	-1.8
1,428,581	+		GFF1402	0.19	+0.3
1,428,599	+		GFF1402	0.19	-1.7
1,428,599	-		GFF1402	0.19	-0.8
1,428,619	+		GFF1402	0.20	-0.7
1,428,641	+		GFF1402	0.21	-0.3
1,428,644	-		GFF1402	0.21	-1.1
1,428,662	+		GFF1402	0.22	+0.5
1,428,665	+		GFF1402	0.22	+0.8
1,428,670	-		GFF1402	0.22	-2.3
1,428,692	-		GFF1402	0.23	-0.5
1,428,694	+		GFF1402	0.23	-0.1
1,428,702	-		GFF1402	0.24	-0.8
1,428,703	-		GFF1402	0.24	-0.7
1,428,736	-		GFF1402	0.25	+1.3
1,428,758	+		GFF1402	0.26	+0.3
1,428,761	-		GFF1402	0.26	+0.9
1,428,766	-		GFF1402	0.26	-2.3
1,428,772	-		GFF1402	0.27	-0.6
1,428,779	-		GFF1402	0.27	+0.6
1,428,779	-		GFF1402	0.27	+0.6
1,428,786	+		GFF1402	0.27	-1.8
1,428,789	-		GFF1402	0.27	+0.1
1,428,789	-		GFF1402	0.27	+0.8
1,428,803	-		GFF1402	0.28	+0.7
1,428,828	+		GFF1402	0.29	-1.3
1,428,828	+		GFF1402	0.29	-1.7
1,428,828	+		GFF1402	0.29	-0.8
1,428,836	-		GFF1402	0.29	+0.9
1,428,836	-		GFF1402	0.29	+0.4
1,428,836	-		GFF1402	0.29	-0.8
1,428,836	-		GFF1402	0.29	-0.3
1,428,836	-		GFF1402	0.29	+0.3
1,428,886	+		GFF1402	0.31	-0.6
1,428,886	+		GFF1402	0.31	-0.1
1,428,886	+		GFF1402	0.31	+1.0
1,428,894	-		GFF1402	0.32	+0.4
1,428,894	-		GFF1402	0.32	+0.6
1,428,900	-		GFF1402	0.32	-1.4
1,428,901	+		GFF1402	0.32	+0.2
1,428,906	+		GFF1402	0.32	-0.5
1,428,929	+		GFF1402	0.33	-0.1
1,428,929	+		GFF1402	0.33	-1.0
1,428,937	-		GFF1402	0.34	+0.6
1,428,947	-		GFF1402	0.34	-1.2
1,428,947	-		GFF1402	0.34	+1.7
1,428,957	-		GFF1402	0.34	-0.3
1,428,957	-		GFF1402	0.34	-0.4
1,428,971	+		GFF1402	0.35	-1.4
1,428,978	-		GFF1402	0.35	-0.5
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