Strain Fitness in Sphingobium sp. HT1-2 around GFF1397

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,423,194	-		GFF1395	0.52	-0.7
1,423,242	+		GFF1395	0.56	-1.6
1,423,254	+		GFF1395	0.57	-0.5
1,423,267	-		GFF1395	0.58	-0.7
1,423,282	-		GFF1395	0.59	-2.2
1,423,287	-		GFF1395	0.60	+0.7
1,423,296	-		GFF1395	0.61	-0.1
1,423,298	+		GFF1395	0.61	-0.2
1,423,306	-		GFF1395	0.62	-0.7
1,423,306	-		GFF1395	0.62	-1.7
1,423,324	+		GFF1395	0.63	-0.8
1,423,352	+		GFF1395	0.66	+0.6
1,423,353	-		GFF1395	0.66	-1.3
1,423,357	+		GFF1395	0.66	-1.1
1,423,357	+		GFF1395	0.66	+0.0
1,423,357	+		GFF1395	0.66	-0.8
1,423,357	+		GFF1395	0.66	+0.5
1,423,365	+		GFF1395	0.67	-0.4
1,423,365	-		GFF1395	0.67	+0.7
1,423,365	-		GFF1395	0.67	+0.7
1,423,365	-		GFF1395	0.67	+0.1
1,423,373	-		GFF1395	0.67	-0.2
1,423,373	-		GFF1395	0.67	+1.0
1,423,374	+		GFF1395	0.67	-1.4
1,423,392	-		GFF1395	0.69	-1.6
1,423,399	+		GFF1395	0.70	-1.7
1,423,399	+		GFF1395	0.70	+0.0
1,423,399	+		GFF1395	0.70	-0.7
1,423,399	+		GFF1395	0.70	+0.1
1,423,399	+		GFF1395	0.70	+0.0
1,423,399	+		GFF1395	0.70	-0.7
1,423,399	+		GFF1395	0.70	-0.4
1,423,399	+		GFF1395	0.70	+0.7
1,423,399	+		GFF1395	0.70	+0.1
1,423,399	+		GFF1395	0.70	+0.9
1,423,400	+		GFF1395	0.70	-1.6
1,423,402	-		GFF1395	0.70	+0.4
1,423,406	+		GFF1395	0.70	+1.3
1,423,407	-		GFF1395	0.70	-1.7
1,423,407	-		GFF1395	0.70	-0.3
1,423,407	-		GFF1395	0.70	-2.2
1,423,407	-		GFF1395	0.70	+1.2
1,423,407	-		GFF1395	0.70	+0.6
1,423,407	-		GFF1395	0.70	-1.0
1,423,407	-		GFF1395	0.70	-1.7
1,423,407	-		GFF1395	0.70	+0.4
1,423,407	-		GFF1395	0.70	+0.1
1,423,407	-		GFF1395	0.70	-1.2
1,423,407	-		GFF1395	0.70	+0.8
1,423,407	-		GFF1395	0.70	+0.6
1,423,407	-		GFF1395	0.70	+0.4
1,423,407	-		GFF1395	0.70	+0.1
1,423,407	-		GFF1395	0.70	-1.4
1,423,407	-		GFF1395	0.70	+0.2
1,423,407	-		GFF1395	0.70	+0.5
1,423,407	-		GFF1395	0.70	-1.9
1,423,407	-		GFF1395	0.70	-0.7
1,423,407	-		GFF1395	0.70	-1.4
1,423,411	+		GFF1395	0.71	+0.3
1,423,430	+		GFF1395	0.72	-0.2
1,423,430	+		GFF1395	0.72	-0.1
1,423,430	+		GFF1395	0.72	-1.3
1,423,430	+		GFF1395	0.72	-0.3
1,423,430	+		GFF1395	0.72	-0.3
1,423,438	-		GFF1395	0.73	+0.9
1,423,438	-		GFF1395	0.73	-0.1
1,423,438	-		GFF1395	0.73	-0.5
1,423,438	-		GFF1395	0.73	-0.7
1,423,438	-		GFF1395	0.73	+0.9
1,423,438	-		GFF1395	0.73	+0.1
1,423,438	-		GFF1395	0.73	-0.9
1,423,438	-		GFF1395	0.73	-0.6
1,423,438	-		GFF1395	0.73	-0.5
1,423,447	+		GFF1395	0.74	-0.4
1,423,447	+		GFF1395	0.74	+0.4
1,423,447	+		GFF1395	0.74	-0.1
1,423,447	+		GFF1395	0.74	-1.4
1,423,447	+		GFF1395	0.74	+0.1
1,423,447	+		GFF1395	0.74	-0.6
1,423,447	+		GFF1395	0.74	-0.7
1,423,448	+		GFF1395	0.74	-0.1
1,423,455	-		GFF1395	0.74	+1.7
1,423,455	-		GFF1395	0.74	-1.1
1,423,455	-		GFF1395	0.74	-1.6
1,423,455	-		GFF1395	0.74	-2.2
1,423,489	+		GFF1395	0.77	+2.0
1,423,499	-		GFF1395	0.78	-0.5
1,423,501	+		GFF1395	0.79	+0.3
1,423,510	+		GFF1395	0.79	+1.0
1,423,525	+		GFF1395	0.81	-0.1
1,423,525	+		GFF1395	0.81	-0.2
1,423,525	+		GFF1395	0.81	+0.2
1,423,525	+		GFF1395	0.81	-1.1
1,423,533	-		GFF1395	0.81	-0.3
1,423,551	-		GFF1395	0.83	+1.0
1,423,568	+		GFF1395	0.84	-1.6
1,423,575	-		GFF1395	0.85	-0.1
1,423,583	+		GFF1395	0.86	-0.2
1,423,592	-		GFF1395	0.86	-0.5
1,423,599	+		GFF1395	0.87	-1.6
1,423,607	-		GFF1395	0.88	+0.6
1,423,611	+		GFF1395	0.88	-2.2
1,423,624	+		GFF1395	0.89	+0.1
1,423,624	+		GFF1395	0.89	-0.4
1,423,627	-		GFF1395	0.89	-1.7
1,423,632	-		GFF1395	0.90	-1.2
1,423,632	-		GFF1395	0.90	+0.5
1,423,632	-		GFF1395	0.90	-2.1
1,423,645	-				-0.1
1,423,662	+				+0.5
1,423,672	+				-0.1
1,423,677	+				-0.2
1,423,679	+				-0.6
1,423,684	+				+0.2
1,423,685	-				-0.3
1,423,692	-				+1.4
1,423,718	-				-1.9
1,423,741	+				-0.1
1,423,741	+				+0.2
1,423,741	+				-0.5
1,423,741	+				-1.5
1,423,749	-				+0.7
1,423,749	-				-0.1
1,423,749	-				-0.4
1,423,749	-				-0.6
1,423,754	-				+0.7
1,423,754	-				-0.4
1,423,769	-				-1.3
1,423,774	-				+0.9
1,423,791	+				-1.1
1,423,791	+				-0.4
1,423,799	-		GFF1396	0.12	-0.1
1,423,799	-		GFF1396	0.12	-0.1
1,423,822	+		GFF1396	0.17	+0.6
1,423,825	+		GFF1396	0.18	-1.7
1,423,838	-		GFF1396	0.21	+0.9
1,423,863	+		GFF1396	0.27	+1.0
1,423,863	+		GFF1396	0.27	-0.9
1,423,904	-		GFF1396	0.37	-2.7
1,423,930	+		GFF1396	0.43	+0.7
1,423,935	+		GFF1396	0.44	-1.3
1,423,935	+		GFF1396	0.44	-0.0
1,423,935	+		GFF1396	0.44	-0.9
1,423,941	+		GFF1396	0.46	+1.1
1,423,942	+		GFF1396	0.46	-0.9
1,423,942	+		GFF1396	0.46	-0.1
1,423,942	+		GFF1396	0.46	-1.7
1,423,943	-		GFF1396	0.46	+0.3
1,423,943	-		GFF1396	0.46	-0.7
1,423,943	-		GFF1396	0.46	-1.1
1,423,943	-		GFF1396	0.46	-0.2
1,423,949	-		GFF1396	0.48	-1.4
1,423,950	-		GFF1396	0.48	-0.6
1,423,950	-		GFF1396	0.48	-1.6
1,423,950	-		GFF1396	0.48	-3.1
1,423,957	+		GFF1396	0.50	+0.1
1,423,972	-		GFF1396	0.53	+0.3
1,423,978	-		GFF1396	0.55	-0.7
1,423,980	-		GFF1396	0.55	+0.0
1,423,991	+		GFF1396	0.58	-0.2
1,423,993	+		GFF1396	0.58	-1.1
1,423,999	+		GFF1396	0.60	+0.0
1,423,999	-		GFF1396	0.60	+0.8
1,424,001	+		GFF1396	0.60	-1.2
1,424,001	+		GFF1396	0.60	-1.5
1,424,001	+		GFF1396	0.60	-1.0
1,424,001	+		GFF1396	0.60	-0.6
1,424,001	+		GFF1396	0.60	+0.2
1,424,001	+		GFF1396	0.60	-1.2
1,424,001	+		GFF1396	0.60	-0.8
1,424,001	+		GFF1396	0.60	+0.3
1,424,001	+		GFF1396	0.60	-0.3
1,424,001	+		GFF1396	0.60	-0.2
1,424,001	+		GFF1396	0.60	-1.6
1,424,007	-		GFF1396	0.62	-0.9
1,424,007	-		GFF1396	0.62	-1.4
1,424,007	-		GFF1396	0.62	-0.5
1,424,009	+		GFF1396	0.62	-0.3
1,424,009	+		GFF1396	0.62	+0.6
1,424,009	+		GFF1396	0.62	+0.9
1,424,009	+		GFF1396	0.62	+0.0
1,424,009	+		GFF1396	0.62	-0.7
1,424,009	-		GFF1396	0.62	+0.1
1,424,009	-		GFF1396	0.62	-1.0
1,424,009	-		GFF1396	0.62	+0.4
1,424,009	-		GFF1396	0.62	-1.6
1,424,009	-		GFF1396	0.62	-0.6
1,424,009	-		GFF1396	0.62	+0.0
1,424,009	-		GFF1396	0.62	-1.3
1,424,017	-		GFF1396	0.64	-2.0
1,424,017	-		GFF1396	0.64	-0.7
1,424,017	-		GFF1396	0.64	+1.1
1,424,017	-		GFF1396	0.64	-1.2
1,424,019	+		GFF1396	0.65	+0.2
1,424,027	-		GFF1396	0.66	-0.5
1,424,078	+		GFF1396	0.79	-0.1
1,424,091	-		GFF1396	0.82	-1.5
1,424,091	-		GFF1396	0.82	-0.7
1,424,136	+				+0.3
1,424,171	+				+1.2
1,424,182	+				-0.5
1,424,187	+				+0.7
1,424,189	+				-1.1
1,424,197	-				-2.9
1,424,202	-				-1.2
1,424,233	+				-0.4
1,424,248	+				-0.8
1,424,250	+				-1.7
1,424,250	+				-0.6
1,424,256	-				-0.1
1,424,256	-				-1.2
1,424,258	+				+0.1
1,424,258	-				+0.8
1,424,261	-				-1.1
1,424,268	+				-0.4
1,424,275	-		GFF1397	0.10	-0.4
1,424,275	-		GFF1397	0.10	-1.2
1,424,275	-		GFF1397	0.10	-0.9
1,424,276	-		GFF1397	0.10	-0.9
1,424,291	-		GFF1397	0.12	+0.1
1,424,303	+		GFF1397	0.13	-2.1
1,424,304	+		GFF1397	0.13	+0.4
1,424,312	-		GFF1397	0.14	-0.6
1,424,314	+		GFF1397	0.14	-1.1
1,424,321	-		GFF1397	0.15	+0.4
1,424,322	-		GFF1397	0.15	+0.5
1,424,322	-		GFF1397	0.15	-0.3
1,424,356	+		GFF1397	0.18	-0.6
1,424,356	+		GFF1397	0.18	+0.1
1,424,383	+		GFF1397	0.21	+1.1
1,424,389	-		GFF1397	0.21	-0.6
1,424,423	-		GFF1397	0.24	+0.1
1,424,450	+		GFF1397	0.27	-0.1
1,424,458	-		GFF1397	0.28	+0.4
1,424,458	-		GFF1397	0.28	+0.6
1,424,458	-		GFF1397	0.28	+0.8
1,424,480	+		GFF1397	0.30	+0.3
1,424,485	+		GFF1397	0.30	+0.3
1,424,496	+		GFF1397	0.32	-0.3
1,424,496	+		GFF1397	0.32	-0.0
1,424,502	+		GFF1397	0.32	-0.4
1,424,510	-		GFF1397	0.33	+1.0
1,424,510	-		GFF1397	0.33	-0.8
1,424,515	-		GFF1397	0.33	-2.5
1,424,555	+		GFF1397	0.37	+0.7
1,424,563	-		GFF1397	0.38	-0.2
1,424,563	-		GFF1397	0.38	-0.7
1,424,567	+		GFF1397	0.38	-0.9
1,424,613	-		GFF1397	0.43	+1.4
1,424,625	-		GFF1397	0.44	-1.0
1,424,629	+		GFF1397	0.44	-1.1
1,424,634	+		GFF1397	0.45	-0.2
1,424,634	+		GFF1397	0.45	-2.0
1,424,634	+		GFF1397	0.45	+1.0
1,424,634	+		GFF1397	0.45	-0.7
1,424,642	-		GFF1397	0.46	-1.3
1,424,642	-		GFF1397	0.46	-0.9
1,424,642	-		GFF1397	0.46	-1.6
1,424,642	-		GFF1397	0.46	-1.6
1,424,659	-		GFF1397	0.47	-0.7
1,424,661	+		GFF1397	0.47	-1.7
1,424,680	+		GFF1397	0.49	-0.7
1,424,721	+		GFF1397	0.53	-1.5
1,424,736	+		GFF1397	0.55	-0.5
1,424,736	+		GFF1397	0.55	-0.3
1,424,738	+		GFF1397	0.55	+0.0
1,424,744	-		GFF1397	0.55	+0.4
1,424,746	-		GFF1397	0.56	-0.4
1,424,747	-		GFF1397	0.56	-0.4
1,424,753	-		GFF1397	0.56	-0.8
1,424,754	-		GFF1397	0.56	-0.3
1,424,774	+		GFF1397	0.58	-1.2
1,424,774	+		GFF1397	0.58	-1.1
1,424,774	+		GFF1397	0.58	+0.7
1,424,774	+		GFF1397	0.58	-0.2
1,424,774	+		GFF1397	0.58	+0.4
1,424,775	+		GFF1397	0.58	-0.3
1,424,776	-		GFF1397	0.58	-1.1
1,424,780	+		GFF1397	0.59	-1.8
1,424,782	-		GFF1397	0.59	-0.2
1,424,782	-		GFF1397	0.59	+0.5
1,424,800	-		GFF1397	0.61	-0.8
1,424,818	+		GFF1397	0.62	+0.4
1,424,851	+		GFF1397	0.66	+0.1
1,424,866	+		GFF1397	0.67	-0.5
1,424,875	+		GFF1397	0.68	-0.1
1,424,880	+		GFF1397	0.68	-0.1
1,424,893	+		GFF1397	0.70	+0.0
1,424,898	+		GFF1397	0.70	-0.5
1,424,903	+		GFF1397	0.71	+0.7
1,424,951	+		GFF1397	0.75	-0.6
1,424,958	+		GFF1397	0.76	+0.3
1,424,958	+		GFF1397	0.76	-3.0
1,424,965	-		GFF1397	0.77	+0.3
1,424,966	-		GFF1397	0.77	+0.3
1,424,978	+		GFF1397	0.78	-1.3
1,425,000	-		GFF1397	0.80	-0.4
1,425,035	-		GFF1397	0.83	-0.6
1,425,047	-		GFF1397	0.84	-2.1
1,425,081	+		GFF1397	0.88	+0.8
1,425,088	+		GFF1397	0.88	+0.1
1,425,089	-		GFF1397	0.88	-0.6
1,425,091	+		GFF1397	0.89	-1.1
1,425,091	-		GFF1397	0.89	-2.3
1,425,097	+		GFF1397	0.89	-0.4
1,425,099	-		GFF1397	0.89	-0.3
1,425,099	-		GFF1397	0.89	-0.0
1,425,099	-		GFF1397	0.89	+0.3
1,425,102	+		GFF1397	0.90	+0.3
1,425,102	+		GFF1397	0.90	-0.9
1,425,105	-				+0.0
1,425,110	-				-1.6
1,425,117	+				-0.7
1,425,118	+				-0.3
1,425,121	+				-1.2
1,425,121	+				-0.6
1,425,121	+				-0.3
1,425,121	+				-2.0
1,425,123	+				-0.1
1,425,123	+				+0.2
1,425,123	+				-0.1
1,425,125	-				+1.3
1,425,125	-				-0.8
1,425,129	-				+0.3
1,425,131	-				+0.7
1,425,131	-				+0.8
1,425,135	-				-1.4
1,425,142	+				-0.6
1,425,142	+				-0.9
1,425,142	+				-0.2
1,425,142	+				-1.3
1,425,142	+				+0.9
1,425,142	+				+0.7
1,425,150	-				-0.6
1,425,150	-				-0.2
1,425,150	-				-1.8
1,425,150	-				+0.1
1,425,150	-				+1.4
1,425,157	+				+0.7
1,425,165	-				+0.6
1,425,171	-				+1.1
1,425,224	-				-1.4
1,425,228	+				+0.3
1,425,236	-				-0.7
1,425,238	+				-0.6
1,425,238	+				-1.3
1,425,238	+				-0.5
1,425,238	+				-0.4
1,425,246	-				-2.3
1,425,246	-				-0.2
1,425,246	-				+0.7
1,425,246	-				-1.1
1,425,246	-				+0.7
1,425,246	-				-0.7
1,425,246	-				-2.3
1,425,246	-				-0.9
1,425,246	-				+1.0
1,425,246	-				-1.6
1,425,282	+		GFF1398	0.15	-0.3
1,425,294	-		GFF1398	0.22	-0.7
1,425,332	+		GFF1398	0.42	-0.3
1,425,332	+		GFF1398	0.42	-0.1
1,425,332	+		GFF1398	0.42	-3.1
1,425,332	+		GFF1398	0.42	+1.8
1,425,340	-		GFF1398	0.46	-0.5
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