Strain Fitness in Sphingobium sp. HT1-2 around GFF1379

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,401,397	+		GFF1377	0.85	-0.5
1,401,397	+		GFF1377	0.85	-1.2
1,401,397	+		GFF1377	0.85	-0.5
1,401,432	-		GFF1377	0.87	+1.4
1,401,507	+				-0.8
1,401,507	+				-1.2
1,401,515	-				-1.5
1,401,533	+				+0.0
1,401,564	+				-2.3
1,401,566	+				-1.6
1,401,571	+				-0.8
1,401,576	+				-0.7
1,401,576	+				+1.8
1,401,579	-				-0.7
1,401,583	+				-0.4
1,401,584	-				+1.7
1,401,584	-				-1.4
1,401,584	-				-1.4
1,401,591	-				-0.6
1,401,591	-				-0.4
1,401,595	+				+0.5
1,401,629	+				-0.8
1,401,642	-				+0.8
1,401,652	+				+0.2
1,401,652	+				-0.1
1,401,652	-				-1.2
1,401,674	+		GFF1378	0.11	-2.5
1,401,743	-		GFF1378	0.20	+0.4
1,401,743	-		GFF1378	0.20	+0.8
1,401,753	+		GFF1378	0.21	-0.1
1,401,760	-		GFF1378	0.22	+0.2
1,401,771	-		GFF1378	0.24	-0.2
1,401,806	-		GFF1378	0.28	-1.0
1,401,806	-		GFF1378	0.28	-1.2
1,401,816	+		GFF1378	0.29	-1.5
1,401,820	+		GFF1378	0.30	+0.3
1,401,821	+		GFF1378	0.30	-0.1
1,401,821	+		GFF1378	0.30	-1.2
1,401,823	-		GFF1378	0.30	+1.1
1,401,828	-		GFF1378	0.31	+0.1
1,401,856	+		GFF1378	0.34	-1.5
1,401,856	+		GFF1378	0.34	-0.0
1,401,858	+		GFF1378	0.35	-1.2
1,401,866	-		GFF1378	0.36	-0.1
1,401,887	-		GFF1378	0.38	+0.0
1,401,894	+		GFF1378	0.39	-2.0
1,401,894	+		GFF1378	0.39	+0.2
1,401,894	+		GFF1378	0.39	+1.0
1,401,894	+		GFF1378	0.39	-1.4
1,401,895	+		GFF1378	0.39	+0.4
1,401,895	+		GFF1378	0.39	+0.6
1,401,902	-		GFF1378	0.40	-0.8
1,401,902	-		GFF1378	0.40	-0.4
1,401,902	-		GFF1378	0.40	-0.6
1,401,902	-		GFF1378	0.40	-0.2
1,401,902	-		GFF1378	0.40	-0.1
1,401,903	+		GFF1378	0.40	+1.8
1,401,903	+		GFF1378	0.40	-1.0
1,401,903	+		GFF1378	0.40	-1.0
1,401,903	-		GFF1378	0.40	+0.2
1,401,903	-		GFF1378	0.40	-0.7
1,401,903	-		GFF1378	0.40	+1.4
1,401,916	-		GFF1378	0.42	+0.4
1,401,931	+		GFF1378	0.44	-1.7
1,401,934	-		GFF1378	0.44	-0.4
1,401,943	-		GFF1378	0.46	-0.5
1,401,943	-		GFF1378	0.46	+0.7
1,401,945	+		GFF1378	0.46	-1.1
1,401,948	-		GFF1378	0.46	-0.6
1,401,953	-		GFF1378	0.47	+1.0
1,401,955	+		GFF1378	0.47	-0.3
1,401,962	+		GFF1378	0.48	+0.1
1,401,965	+		GFF1378	0.48	-0.3
1,401,987	+		GFF1378	0.51	-0.5
1,401,987	+		GFF1378	0.51	+0.5
1,401,992	+		GFF1378	0.52	-1.1
1,401,992	+		GFF1378	0.52	-2.4
1,401,992	+		GFF1378	0.52	-0.1
1,401,992	+		GFF1378	0.52	-1.1
1,401,992	+		GFF1378	0.52	-0.8
1,401,992	+		GFF1378	0.52	+0.6
1,401,998	+		GFF1378	0.53	+0.6
1,402,000	-		GFF1378	0.53	-1.2
1,402,000	-		GFF1378	0.53	-1.0
1,402,000	-		GFF1378	0.53	+0.4
1,402,000	-		GFF1378	0.53	-0.9
1,402,003	+		GFF1378	0.53	-0.7
1,402,008	+		GFF1378	0.54	-0.1
1,402,027	+		GFF1378	0.56	-0.4
1,402,030	+		GFF1378	0.57	-0.1
1,402,030	-		GFF1378	0.57	-0.6
1,402,032	-		GFF1378	0.57	-0.3
1,402,085	-		GFF1378	0.64	-1.0
1,402,085	-		GFF1378	0.64	-0.8
1,402,104	-		GFF1378	0.66	-0.1
1,402,108	+		GFF1378	0.67	+0.7
1,402,109	+		GFF1378	0.67	-0.3
1,402,109	+		GFF1378	0.67	-0.9
1,402,116	-		GFF1378	0.68	-0.7
1,402,117	-		GFF1378	0.68	+0.7
1,402,145	-		GFF1378	0.71	-0.1
1,402,148	-		GFF1378	0.72	+0.2
1,402,160	+		GFF1378	0.73	+0.9
1,402,198	+		GFF1378	0.78	+0.5
1,402,198	+		GFF1378	0.78	-0.3
1,402,208	+		GFF1378	0.79	-0.2
1,402,208	+		GFF1378	0.79	-0.3
1,402,208	+		GFF1378	0.79	-0.2
1,402,216	-		GFF1378	0.80	+1.0
1,402,230	+		GFF1378	0.82	-1.6
1,402,230	+		GFF1378	0.82	-0.7
1,402,237	+		GFF1378	0.83	-0.2
1,402,238	-		GFF1378	0.83	-0.2
1,402,238	-		GFF1378	0.83	-2.8
1,402,256	-		GFF1378	0.86	+0.7
1,402,265	+		GFF1378	0.87	-0.6
1,402,267	+		GFF1378	0.87	+0.3
1,402,267	+		GFF1378	0.87	-0.5
1,402,267	+		GFF1378	0.87	-1.1
1,402,273	-		GFF1378	0.88	-0.0
1,402,275	-		GFF1378	0.88	-0.6
1,402,275	-		GFF1378	0.88	-2.6
1,402,275	-		GFF1378	0.88	-0.4
1,402,301	-				-1.7
1,402,312	-				-1.4
1,402,340	+				-0.1
1,402,340	+				-2.1
1,402,343	-				+0.5
1,402,343	-				-0.5
1,402,345	+				+0.9
1,402,345	+				+0.7
1,402,345	+				-2.0
1,402,348	-				-0.7
1,402,353	-				+1.6
1,402,353	-				-1.2
1,402,357	+				-0.7
1,402,365	-				-0.3
1,402,375	-				-0.7
1,402,383	+				-1.9
1,402,391	-				-0.7
1,402,398	+				-1.2
1,402,420	+				-0.1
1,402,420	-				+0.5
1,402,420	-				-1.6
1,402,426	-				+0.3
1,402,428	-				-0.3
1,402,444	+				-0.4
1,402,444	+				+0.3
1,402,447	-				-0.6
1,402,447	-				+0.1
1,402,452	-				-0.4
1,402,452	-				-1.0
1,402,455	+				-0.1
1,402,476	+		GFF1379	0.11	-0.9
1,402,486	+		GFF1379	0.12	+0.1
1,402,505	-		GFF1379	0.14	-0.5
1,402,505	-		GFF1379	0.14	-0.4
1,402,507	+		GFF1379	0.15	+0.3
1,402,515	-		GFF1379	0.15	-0.9
1,402,516	-		GFF1379	0.16	-1.2
1,402,522	+		GFF1379	0.16	-1.0
1,402,522	+		GFF1379	0.16	+0.1
1,402,535	+		GFF1379	0.18	+0.1
1,402,535	+		GFF1379	0.18	+0.3
1,402,535	+		GFF1379	0.18	-1.9
1,402,541	+		GFF1379	0.18	-1.5
1,402,543	-		GFF1379	0.19	+1.3
1,402,549	-		GFF1379	0.19	+0.2
1,402,563	+		GFF1379	0.21	+0.3
1,402,563	+		GFF1379	0.21	+0.4
1,402,590	+		GFF1379	0.24	+0.5
1,402,590	+		GFF1379	0.24	-0.5
1,402,590	+		GFF1379	0.24	-0.6
1,402,602	+		GFF1379	0.25	+0.3
1,402,603	+		GFF1379	0.26	-0.6
1,402,608	+		GFF1379	0.26	-2.4
1,402,611	-		GFF1379	0.27	-1.6
1,402,613	+		GFF1379	0.27	+0.9
1,402,613	+		GFF1379	0.27	+0.5
1,402,621	-		GFF1379	0.28	+0.5
1,402,621	-		GFF1379	0.28	+1.5
1,402,621	-		GFF1379	0.28	-2.5
1,402,631	+		GFF1379	0.29	-0.5
1,402,643	+		GFF1379	0.30	-0.7
1,402,644	-		GFF1379	0.30	-1.4
1,402,649	-		GFF1379	0.31	-0.1
1,402,649	-		GFF1379	0.31	-0.8
1,402,650	-		GFF1379	0.31	-0.4
1,402,651	+		GFF1379	0.31	-0.3
1,402,654	-		GFF1379	0.31	-1.6
1,402,659	-		GFF1379	0.32	+0.8
1,402,659	-		GFF1379	0.32	-1.4
1,402,659	-		GFF1379	0.32	-1.6
1,402,664	-		GFF1379	0.33	-0.1
1,402,703	+		GFF1379	0.37	+0.5
1,402,703	+		GFF1379	0.37	-2.0
1,402,703	+		GFF1379	0.37	-1.0
1,402,703	+		GFF1379	0.37	+0.1
1,402,703	+		GFF1379	0.37	+0.6
1,402,703	+		GFF1379	0.37	+1.6
1,402,703	+		GFF1379	0.37	-0.8
1,402,711	-		GFF1379	0.38	-0.5
1,402,711	-		GFF1379	0.38	-0.2
1,402,711	-		GFF1379	0.38	-0.2
1,402,733	+		GFF1379	0.41	+0.1
1,402,733	+		GFF1379	0.41	-0.1
1,402,733	+		GFF1379	0.41	-2.3
1,402,734	+		GFF1379	0.41	-2.0
1,402,742	-		GFF1379	0.42	-0.5
1,402,742	-		GFF1379	0.42	-1.0
1,402,751	+		GFF1379	0.43	-0.2
1,402,755	+		GFF1379	0.43	-0.8
1,402,755	+		GFF1379	0.43	+0.6
1,402,759	-		GFF1379	0.44	-0.3
1,402,763	-		GFF1379	0.44	-1.1
1,402,763	-		GFF1379	0.44	+0.3
1,402,763	-		GFF1379	0.44	-1.6
1,402,763	-		GFF1379	0.44	-1.9
1,402,763	-		GFF1379	0.44	-0.3
1,402,769	-		GFF1379	0.45	-2.4
1,402,789	-		GFF1379	0.47	+0.0
1,402,789	-		GFF1379	0.47	-0.7
1,402,791	+		GFF1379	0.47	-0.1
1,402,794	-		GFF1379	0.48	+0.6
1,402,794	-		GFF1379	0.48	-0.5
1,402,800	-		GFF1379	0.48	-0.1
1,402,841	+		GFF1379	0.53	-1.4
1,402,841	+		GFF1379	0.53	-0.3
1,402,851	+		GFF1379	0.54	+0.3
1,402,851	+		GFF1379	0.54	+0.3
1,402,858	+		GFF1379	0.55	-1.3
1,402,858	+		GFF1379	0.55	+0.5
1,402,859	-		GFF1379	0.55	+0.3
1,402,859	-		GFF1379	0.55	+0.3
1,402,904	+		GFF1379	0.60	-0.6
1,402,938	+		GFF1379	0.64	+0.5
1,402,943	+		GFF1379	0.65	+0.7
1,402,946	-		GFF1379	0.65	+0.3
1,402,946	-		GFF1379	0.65	+1.1
1,402,946	-		GFF1379	0.65	-1.2
1,402,946	-		GFF1379	0.65	+0.7
1,402,951	-		GFF1379	0.66	+1.8
1,403,004	+		GFF1379	0.72	+1.2
1,403,014	-		GFF1379	0.73	-0.0
1,403,043	+		GFF1379	0.76	-2.3
1,403,057	+		GFF1379	0.78	+0.0
1,403,061	+		GFF1379	0.78	+0.1
1,403,065	-		GFF1379	0.79	-0.2
1,403,065	-		GFF1379	0.79	-0.8
1,403,065	-		GFF1379	0.79	+0.4
1,403,065	-		GFF1379	0.79	-2.1
1,403,070	-		GFF1379	0.79	+1.3
1,403,070	-		GFF1379	0.79	+1.0
1,403,070	-		GFF1379	0.79	-0.4
1,403,070	-		GFF1379	0.79	+0.5
1,403,077	+		GFF1379	0.80	+0.0
1,403,079	+		GFF1379	0.81	-1.7
1,403,085	-		GFF1379	0.81	+0.4
1,403,110	+		GFF1379	0.84	-1.8
1,403,116	+		GFF1379	0.85	+0.0
1,403,116	+		GFF1379	0.85	-1.5
1,403,124	-		GFF1379	0.86	-1.3
1,403,124	-		GFF1379	0.86	-0.5
1,403,134	+		GFF1379	0.87	-1.3
1,403,144	+		GFF1379	0.88	-0.8
1,403,144	+		GFF1379	0.88	-1.6
1,403,156	-		GFF1379	0.89	-0.9
1,403,162	-				-0.9
1,403,164	-				-2.7
1,403,164	-				+0.0
1,403,172	-				-0.5
1,403,207	+				-2.0
1,403,236	+				-0.2
1,403,240	-				+0.5
1,403,242	+				-2.1
1,403,244	-				-0.2
1,403,244	-				-0.7
1,403,244	-				-2.0
1,403,244	-				+0.0
1,403,244	-				+0.8
1,403,244	-				-1.2
1,403,246	-				+0.2
1,403,250	-				-1.0
1,403,275	+				-0.5
1,403,284	+				+0.7
1,403,292	-				-0.8
1,403,301	+				-1.4
1,403,303	+				+0.4
1,403,303	+				+1.1
1,403,303	+				+0.8
1,403,310	+				-1.0
1,403,311	-				+0.5
1,403,340	-				+1.0
1,403,363	-				-1.0
1,403,369	+				-1.0
1,403,369	+				-0.3
1,403,372	-				-1.2
1,403,398	-				-0.4
1,403,398	-				-0.1
1,403,410	+				+0.2
1,403,434	+		GFF1380	0.11	-0.7
1,403,434	-		GFF1380	0.11	-2.5
1,403,442	-		GFF1380	0.12	-0.1
1,403,442	-		GFF1380	0.12	-0.1
1,403,442	-		GFF1380	0.12	+0.6
1,403,442	-		GFF1380	0.12	+1.3
1,403,512	+		GFF1380	0.16	-0.7
1,403,515	-		GFF1380	0.16	+0.2
1,403,520	-		GFF1380	0.16	+0.6
1,403,520	-		GFF1380	0.16	-0.1
1,403,522	+		GFF1380	0.17	+0.3
1,403,522	+		GFF1380	0.17	+0.1
1,403,530	-		GFF1380	0.17	+0.2
1,403,549	-		GFF1380	0.18	-0.7
1,403,553	+		GFF1380	0.18	-1.1
1,403,559	-		GFF1380	0.19	+1.2
1,403,597	+		GFF1380	0.21	+0.3
1,403,605	-		GFF1380	0.21	+0.8
1,403,614	+		GFF1380	0.22	+0.6
1,403,614	+		GFF1380	0.22	-0.5
1,403,621	+		GFF1380	0.22	+0.7
1,403,622	-		GFF1380	0.22	+0.9
1,403,622	-		GFF1380	0.22	-1.5
1,403,642	+		GFF1380	0.24	+1.3
1,403,655	+		GFF1380	0.24	-0.3
1,403,655	+		GFF1380	0.24	+1.7
1,403,657	-		GFF1380	0.25	-1.0
1,403,658	-		GFF1380	0.25	-2.3
1,403,658	-		GFF1380	0.25	-0.1
1,403,660	+		GFF1380	0.25	-2.2
1,403,663	-		GFF1380	0.25	+0.4
1,403,663	-		GFF1380	0.25	-2.1
1,403,663	-		GFF1380	0.25	+0.4
1,403,665	+		GFF1380	0.25	-0.1
1,403,665	+		GFF1380	0.25	-1.0
1,403,668	-		GFF1380	0.25	+0.5
1,403,675	-		GFF1380	0.26	-1.9
1,403,691	+		GFF1380	0.27	-0.5
1,403,691	+		GFF1380	0.27	+0.4
1,403,691	+		GFF1380	0.27	-0.2
1,403,691	+		GFF1380	0.27	-0.5
1,403,691	+		GFF1380	0.27	+1.0
1,403,699	-		GFF1380	0.27	+0.6
1,403,699	-		GFF1380	0.27	+0.0
1,403,699	-		GFF1380	0.27	-1.5
1,403,699	-		GFF1380	0.27	-0.9
1,403,714	+		GFF1380	0.28	-0.4
1,403,715	+		GFF1380	0.28	-1.2
1,403,722	-		GFF1380	0.28	+0.7
1,403,727	+		GFF1380	0.29	-1.0
1,403,771	+		GFF1380	0.31	-1.2
1,403,792	+		GFF1380	0.33	+0.7
1,403,800	-		GFF1380	0.33	-0.5
1,403,800	-		GFF1380	0.33	-0.5
1,403,800	-		GFF1380	0.33	-0.3
1,403,800	-		GFF1380	0.33	-2.6
1,403,808	+		GFF1380	0.34	-0.9
1,403,835	-		GFF1380	0.35	+0.5
1,403,851	-		GFF1380	0.36	-0.5
1,403,858	+		GFF1380	0.36	-1.3
1,403,873	+		GFF1380	0.37	-0.9
1,403,873	+		GFF1380	0.37	-1.3
1,403,875	+		GFF1380	0.37	-2.3
1,403,877	-		GFF1380	0.38	-0.9
1,403,880	-		GFF1380	0.38	-0.1
1,403,881	-		GFF1380	0.38	+0.1
1,403,922	-		GFF1380	0.40	-1.2
1,403,932	+		GFF1380	0.41	-0.4
1,403,932	+		GFF1380	0.41	-0.3
1,403,932	+		GFF1380	0.41	+0.5
1,403,932	+		GFF1380	0.41	+0.0
1,403,940	-		GFF1380	0.41	-0.3
1,403,940	-		GFF1380	0.41	-0.0
1,403,942	+		GFF1380	0.41	-0.8
1,403,942	+		GFF1380	0.41	-1.3
1,403,942	+		GFF1380	0.41	-0.2
1,403,942	+		GFF1380	0.41	-0.2
1,403,942	+		GFF1380	0.41	-2.3
1,403,942	+		GFF1380	0.41	-0.5
1,403,942	+		GFF1380	0.41	-0.2
1,403,945	-		GFF1380	0.42	-1.3
1,403,950	-		GFF1380	0.42	-1.4
1,403,950	-		GFF1380	0.42	-0.4
1,403,950	-		GFF1380	0.42	-0.1
1,404,003	+		GFF1380	0.45	-1.3
1,404,038	+		GFF1380	0.47	-2.9
1,404,038	+		GFF1380	0.47	+0.5
1,404,038	+		GFF1380	0.47	+1.6
1,404,046	-		GFF1380	0.48	-1.5
1,404,046	-		GFF1380	0.48	-2.7
1,404,046	-		GFF1380	0.48	-0.5
1,404,065	-		GFF1380	0.49	-0.6
1,404,107	+		GFF1380	0.51	-1.3
1,404,125	-		GFF1380	0.52	-0.8
1,404,125	-		GFF1380	0.52	+1.1
1,404,128	+		GFF1380	0.53	-0.4
1,404,128	+		GFF1380	0.53	-0.2
1,404,128	+		GFF1380	0.53	+0.9
1,404,130	-		GFF1380	0.53	+0.6
1,404,138	+		GFF1380	0.53	+0.1
1,404,139	+		GFF1380	0.53	-1.0
1,404,147	-		GFF1380	0.54	-1.0
1,404,156	+		GFF1380	0.54	+0.0
1,404,156	+		GFF1380	0.54	-0.7
1,404,156	+		GFF1380	0.54	+0.5
1,404,156	+		GFF1380	0.54	-0.9
1,404,163	+		GFF1380	0.55	-1.5
1,404,164	-		GFF1380	0.55	-0.8
1,404,164	-		GFF1380	0.55	-0.7
1,404,164	-		GFF1380	0.55	-2.1
1,404,166	-		GFF1380	0.55	-1.6
1,404,183	+		GFF1380	0.56	-1.8
1,404,240	+		GFF1380	0.59	+0.4
1,404,247	+		GFF1380	0.60	+1.1
1,404,247	+		GFF1380	0.60	-0.7